Sed0012588.1 (mRNA) Chayote v1

Overview


Name	Sed0012588.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	heterogeneous nuclear ribonucleoprotein 1-like
Location	LG09: 8095589 .. 8101207 (+)
Sequence length	2483
RNA-Seq Expression	Sed0012588.1
Synteny	Sed0012588.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAATCCAACCATTCCACAATCAAACCAATCCTGACCGTTCAAATCGCATACCTTCAACTCTCTCAAACACAAACCCTACTGCTTCAGCGAAAAGCTCTCAGATTCATCCAAAACGCTCTCTGTCTCTTTCGTTCTTCGATTTGTTTCTTCAAACCCTCTTCTCTCTCCCCTGAATTCCATAACCCACAAAGCGAAATCGAGAAAAACGAGCATTGAATCGATTTTTTTCCATCTGGGGTTCTTGAGAAAAGAGGGGAAAAACTAAAATTGGCAATGGATTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCATGGGATACCACGGAGGATAAGCTTAGGAACCACTTTGCCGTCTATGGCGAAGTGATGCATACAGTTGTTATGAGAGATAAGATCACTAGCAGACCTAGAGGCTTTGGATTTGTTGTCTTTTCAGATCCTTCTGTTCTTGATCGAGTTCTTCGGGATAAGCACACTATTGATGGGAAGCCGGTGCGTGAGAATCTTGTTTCTGTTTGCTTTTACTTGTTTTTTATGATTTCTGTTTTGGGGTTTTTGGATTTTGCCTGGATTTGAGTTATTGGGGTTTTGATTCCATAATGGCACTCAATCATTCTCTTTTGGTGTGTCAAATATTTGATATTTATTGGTTTCTGCACCTCTTGTTATTGAGTTTTTTTTTCTTTGGTTCATGGGTTGTCTTTTCTGCATCGTATAGTTTTTTGTGTAATATCTGTTGGTTTTGGTGCTGTATTTTTTCACGAGGAGAGGTATTTACAAAAGGGTCAGTTGTATTTTGCAATTTCATTTCAGCATAGTTTATGTTTTCACTATGATTGTTTAGATGTACCCTCTTGATAGTTAATTCTAGAGTATAAACTTTTGTTAGGAATCTGTGTTTGTATCAAGTTTTCTTTGGTAAACATTACGTTTTGGAGATGAAACTTTACAAGTTCCTTGTAACCGTTACTTGTTGTTAGCTTTGATTTTGTTTCAAGGACAGTATTTATAATGGCGCATAAGTAATAATGTAATATGGCAACAAAATGTGTGTGTAACTAATACTTTGCAGCTGTGTGTAACAATAATAATGTAATAATGTATGTAATATGTGTATGTATAGTGTAGTAACATTAACATAATATTAATAACACAATAACATAAAATATAATGTACTCAATAATATGTGTGTATTAACAATAATGTGTGTATGTGTGGCATATAGCATGTGCGGCGTAAAGCAATAATAGCGCGCTTTGCATGTGGCAACTGTGGCAGCTTAATATTGGCAATAACGAAACAGCCGTTACATGGCAGCAGCAGCGCGGCAGCGGCGGCGCGGCAGCAGCGCGAAAGCGGCGGCAGCAGCGCGGCAGCGACGGCGGCGGCGGCGGCAGGCAGGCTGGCAGCGGCAGCGCGCGGCAGCGAAAAGCGCGCGGCAGCGCGCGCGTGGCGCGGCGCGGCGTGGCCCGGCAGCCGCGGCACCAATGTGGCGAAGCGGCAATGGCAATGGCGAAGCTTCTTTGGCGTAATGGCGCGTGCGCGCTGAATGTGAATGTAACGACATGAAGCAGCGGCGGCATGTGCGCGAAGCGCGCGAATAATGATGTTAACAATGGCGAAGCAATAATGGCGACAGTAATGTATGTGTTATGTGTGTAATCGTGAATAACATTAACAAGTAAGTAAGTAATGTGTAATGTAAATATGTGTATGAAAACCAATAATGTTAATGGCAAGAAAATGTAATAGCGGCATGAAACTTAATTAAGCAGCTGTATTAAGATGGTGCGTGGCGAAGCGTATGTAACTTGCATGGCGTAATGTGTATGAAGAAGGCAATGAAAGCATATGGCATGGCATGTATATGAAGCATGAAACCAATGTTGGCATGGCGCAGCAATGTAGTAATGTTATGTGTATGTGTATAACTGTGGCAGACGGCGTAATGAAATGTTGACAGTAGCAATGTGTGAAACGTGTAACAATATTAATGAAGCTGGCTGGCGTAGCGTATGGCGTTTGGCGTGCAAACAGTGTGGCGGCGCTGGCAGCGAAAAGTAACGTACTGCTGTGGCGAAGCGCGGCAATGGCGTGTGTGGCGGCAGCAGCGAAAAAGCAATGGCAATGTAGCAGCTAAACAATGTGGCGGCGTTAACAATAATATGTGGCAATTGTGTGGCTAAACATATAATAACATGTAAATAGCAAGCTGTGTAATAATGTATGAAAATGCAGAAGCGTAAACAACATGTAACCTTGTAATGACTAGCGTGAAGCGTATGTAGAAACGGCGTAAGTGTATAGTAACAGCAATGTTATGACTGATATTTAGTATTAACAATATATACTATTAATATATATATAATGAGTAATGTTATGTATGTAAATATATAATGCAACAAATATATAATAATGGCGTGTGTATAATGTAATAATGTTATTATGGCGCTCGACAGCGCATAGTATTCATTATTGTGTATTGCAATAATAACAGCGCAATGTGGCGTTTTTATGATTTCTGTTTTGGGGTTTTTGGATTTTGCCTGGATTTGAGTTATTGGGGTTTTGATTCCATAATGGCACTCAATCATTCTCTTTTGGTGTGTCAAATATTTGATATTTATTGGTTTCTGCACCTCTTGTTATTGAGTTTTTTTTTCTTTGGTTCATGGGTTGTCTTTTCTGCATCGTATAGTTTTTTGTGTAATATCTGTTGGTTTTGGTGCTGTATTTTTTCACGAGGAGAGGTATTTACAAAAGGGTCAGTTGTATTTTGCAATTTCATTTCAGCATAGTTTATGTTTTCACTATGATTGTTTAGATGTACCCTCTTGATAGTTAATTCTAGAGTATAAACTTTTGTTAGGAATCTGTGTTTGTATCAAGTTTTCTTTGGTAAACATTACGTTTTGGAGATGAAACTTTACAAGTTCCTTGTAACCGTTACTTGTTGTTAGCTTTGATTTTGTTTCAAGGACAGTATTTACCCAGGCTTTAACATTTTCTCTTTTGTATATCTTATCTTTTGGAAATATTTTTACCTTTCTGTAGAGTCCTTTTTTTAAGTACTGTTTTAGCATTTGTAATTTATATTCTTTTCTAGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACTCCTGCCAGAACAGGAAATTCTAATGCTACTAGAAACTTGGGTGGTGGTGGGGGTGGTGGAAATATGAGAACCAAAAAAATCTTTGTTGGGGGACTGCCTCCGACATTGACCGAAGAAGGATTTAAGGAGTACTTTGAGGCTTTTGGCGATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGATTTATATCTTTTGATACCGAAGAATCTGTCGATAGAGTCTTGCACAAGACGTTTCATGATTTGAATGGTAAACAGGTAGAAGTTAAGCGTGCCCTCCCTAAGGATGCCAATCCAGGTGCAGGTGGTCGTTCAATGGGTGGTGGTGCAGGTAGTGGTGGTTATCAAAGCTACGGGTCATCTGGTGGTCTGAATTCAAATTCATATGATAATCGTATGGATTCCAATAGGTACATGCAATCTCAGGGCTCTAGTGGAGGTTTCCCACCGTATGGTTCCTCTGGATATAATAATCCCGGGTATGGATATGGTTCATCCACCAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCTAATGCTGGGTATGGTGCTCCTGCAGCTGTAGCCTATGGTAACCCGAATGCTGGTTATGGAAGTGGTCCTCAAGGTGGACCTAGAAGTTCATGGTCAGCTCAAGCTCCCTCTGGGTATGGGGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCGGTAGGCAATGCTGGAGCTGGCAGTGGTGGACCCGGATCTGCACCCACTGGTCAGTCTCCTGGTGGAGCTGCTGGGTATGGCAATCAGGGTTATGGATACAGTGGGTTTGGTAATCAAGGTTATGGTTACAGTGGAGGTGATGGCTCATATGGGACTCAATCTGGTTATGGTACAGCCGGAGGACGTTCGGGTAATCCCTTGAATAGCAATGTTGGGGGTGGTCCTAATGGGGGAGAATTACAAGGGAACAGTGGTGCCTACATGGGTAATGGCTATGGAGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGGTCTGATGGAGGACAAGTAGGTTATACTGGTGGTTATGCCAGCGGACAAGCTCGACAAACCCAACAACAGTAATTTGATGATTAAAAATGAACTGGTTCTTGCCATGTTCTGTGTATCCCTGTTTGTTTTATGAGATCGGTGTTTTTTATTTGCTTATTATAAGAAGTTTTCTTGTTGCTGACTGAAGCGGTGGCCCAATTGGAACGAATGCGATGAGCCGGGTGGGGTTGCTTGAATCCAAGTAGCTTGCAGTATTAATTTTTCTAGTCTAAAATAAGTAGCTGTTTTAGAAGTTCACTTGATGCTTCAGTTATTTAGTATTTTATTTCCGAATGTAGTTAAATCTGATATCTTTATGAATGTCTATTTAGCTGTCTTGAATCAGTTTTTATCTTTTTCCATTGTTCGAGCTGTAACGATTTGTAGCATTTTCTCATTATCAGTGGTTTGTTAGCTCTACTTATATTAAGATGTTATTATGTTTCCTCGTCCCCTATAGATCACCTGGCGTAGATGATATGAAGAATTAGGGGATAGATGTTTCATTCTTTATTTTACATTTCAATTAGGAATACAAAGGTATAGTGTAGGGTGGAAAGAGAGTTGTAGTGATAGATGATAGTGTTGGAGCCCTCACTATAGAGGGCGTAATCACTTCGTATGGTTAGACCTAATCGTAGTCGTAGTTGGCTCTTTAAAAATGGCATAATCATTTTCCCCCTCTATTTGCCCTTGTGTTACAGGAGGGATGCCCGGAGTTGTAAAAGTGGAGTCAAGAGAATCCATTCATGGCTGAACACGGGTTTCGTAGTGAAGGGGGACAGTGTTGGTGATGTACGTGTTCAGCATTTATGGAACTCGAGGACCTTTAACCGGTTGAATTAGCAGATATACCCCTGGAACCGAATATTTTCGTCTGCAAGGCCTTGCCAGCACTATCAAGTATTTCCAAATGTCTGGTATTGCAAGTAGTCATGAGTACCACTACCATTCATTCATCAATGAAAGTTTTTGTTTCCTTTATAAAATAATAGTCAAAATAGTCATGAGTTTATAGTAAATCTTCTCCAAGGAAGAATCCATACCTACAAGTTTTGGTAATGTAGGTTATTTGGTTCTTGTTGAAACAGATTCCAATCAAGTTTTTAGAGTACATACAAAGTTAAACTTCATAGCCTTCTCTTCTTTCATTTAATAGCTATTAGTAGTTTGTGCAGCTTAGCCTAAATACAATGGTTGTGCTGTTACCTTGTTCTGTTTGTGTAGTAGATACGGTTCGATATTAATCCTTTGCGATTTTTCTTCGAGGTCCACATTCAGTCGTAGAGAACTTGGTTTTATAACAGTTAGGTGAAAGTGATATCTTTTTGTTGTTCCTTTGTAGACTTTTAAATGATTTTCGATGCAGTCAGGCG

mRNA sequence

AACAAATCCAACCATTCCACAATCAAACCAATCCTGACCGTTCAAATCGCATACCTTCAACTCTCTCAAACACAAACCCTACTGCTTCAGCGAAAAGCTCTCAGATTCATCCAAAACGCTCTCTGTCTCTTTCGTTCTTCGATTTGTTTCTTCAAACCCTCTTCTCTCTCCCCTGAATTCCATAACCCACAAAGCGAAATCGAGAAAAACGAGCATTGAATCGATTTTTTTCCATCTGGGGTTCTTGAGAAAAGAGGGGAAAAACTAAAATTGGCAATGGATTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCATGGGATACCACGGAGGATAAGCTTAGGAACCACTTTGCCGTCTATGGCGAAGTGATGCATACAGTTGTTATGAGAGATAAGATCACTAGCAGACCTAGAGGCTTTGGATTTGTTGTCTTTTCAGATCCTTCTGTTCTTGATCGAGTTCTTCGGGATAAGCACACTATTGATGGGAAGCCGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACTCCTGCCAGAACAGGAAATTCTAATGCTACTAGAAACTTGGGTGGTGGTGGGGGTGGTGGAAATATGAGAACCAAAAAAATCTTTGTTGGGGGACTGCCTCCGACATTGACCGAAGAAGGATTTAAGGAGTACTTTGAGGCTTTTGGCGATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGATTTATATCTTTTGATACCGAAGAATCTGTCGATAGAGTCTTGCACAAGACGTTTCATGATTTGAATGGTAAACAGGTAGAAGTTAAGCGTGCCCTCCCTAAGGATGCCAATCCAGGTGCAGGTGGTCGTTCAATGGGTGGTGGTGCAGGTAGTGGTGGTTATCAAAGCTACGGGTCATCTGGTGGTCTGAATTCAAATTCATATGATAATCGTATGGATTCCAATAGGTACATGCAATCTCAGGGCTCTAGTGGAGGTTTCCCACCGTATGGTTCCTCTGGATATAATAATCCCGGGTATGGATATGGTTCATCCACCAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCTAATGCTGGGTATGGTGCTCCTGCAGCTGTAGCCTATGGTAACCCGAATGCTGGTTATGGAAGTGGTCCTCAAGGTGGACCTAGAAGTTCATGGTCAGCTCAAGCTCCCTCTGGGTATGGGGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCGGTAGGCAATGCTGGAGCTGGCAGTGGTGGACCCGGATCTGCACCCACTGGTCAGTCTCCTGGTGGAGCTGCTGGGTATGGCAATCAGGGTTATGGATACAGTGGGTTTGGTAATCAAGGTTATGGTTACAGTGGAGGTGATGGCTCATATGGGACTCAATCTGGTTATGGTACAGCCGGAGGACGTTCGGGTAATCCCTTGAATAGCAATGTTGGGGGTGGTCCTAATGGGGGAGAATTACAAGGGAACAGTGGTGCCTACATGGGTAATGGCTATGGAGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGGTCTGATGGAGGACAAGTAGGTTATACTGGTGGTTATGCCAGCGGACAAGCTCGACAAACCCAACAACAGTAATTTGATGATTAAAAATGAACTGGTTCTTGCCATGTTCTGTGTATCCCTGTTTGTTTTATGAGATCGGTGTTTTTTATTTGCTTATTATAAGAAGTTTTCTTGTTGCTGACTGAAGCGGTGGCCCAATTGGAACGAATGCGATGAGCCGGGAGGGATGCCCGGAGTTGTAAAAGTGGAGTCAAGAGAATCCATTCATGGCTGAACACGGGTTTCGTAGTGAAGGGGGACAGTGTTGGTGATGTACGTGTTCAGCATTTATGGAACTCGAGGACCTTTAACCGGTTGAATTAGCAGATATACCCCTGGAACCGAATATTTTCGTCTGCAAGGCCTTGCCAGCACTATCAAGTATTTCCAAATGTCTGGTATTGCAAGTAGTCATGAGTACCACTACCATTCATTCATCAATGAAAGTTTTTGTTTCCTTTATAAAATAATAGTCAAAATAGTCATGAGTTTATAGTAAATCTTCTCCAAGGAAGAATCCATACCTACAAGTTTTGGTAATGTAGGTTATTTGGTTCTTGTTGAAACAGATTCCAATCAAGTTTTTAGAGTACATACAAAGTTAAACTTCATAGCCTTCTCTTCTTTCATTTAATAGCTATTAGTAGTTTGTGCAGCTTAGCCTAAATACAATGGTTGTGCTGTTACCTTGTTCTGTTTGTGTAGTAGATACGGTTCGATATTAATCCTTTGCGATTTTTCTTCGAGGTCCACATTCAGTCGTAGAGAACTTGGTTTTATAACAGTTAGGTGAAAGTGATATCTTTTTGTTGTTCCTTTGTAGACTTTTAAATGATTTTCGATGCAGTCAGGCG

Coding sequence (CDS)

ATGGATTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCATGGGATACCACGGAGGATAAGCTTAGGAACCACTTTGCCGTCTATGGCGAAGTGATGCATACAGTTGTTATGAGAGATAAGATCACTAGCAGACCTAGAGGCTTTGGATTTGTTGTCTTTTCAGATCCTTCTGTTCTTGATCGAGTTCTTCGGGATAAGCACACTATTGATGGGAAGCCGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACTCCTGCCAGAACAGGAAATTCTAATGCTACTAGAAACTTGGGTGGTGGTGGGGGTGGTGGAAATATGAGAACCAAAAAAATCTTTGTTGGGGGACTGCCTCCGACATTGACCGAAGAAGGATTTAAGGAGTACTTTGAGGCTTTTGGCGATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGATTTATATCTTTTGATACCGAAGAATCTGTCGATAGAGTCTTGCACAAGACGTTTCATGATTTGAATGGTAAACAGGTAGAAGTTAAGCGTGCCCTCCCTAAGGATGCCAATCCAGGTGCAGGTGGTCGTTCAATGGGTGGTGGTGCAGGTAGTGGTGGTTATCAAAGCTACGGGTCATCTGGTGGTCTGAATTCAAATTCATATGATAATCGTATGGATTCCAATAGGTACATGCAATCTCAGGGCTCTAGTGGAGGTTTCCCACCGTATGGTTCCTCTGGATATAATAATCCCGGGTATGGATATGGTTCATCCACCAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCTAATGCTGGGTATGGTGCTCCTGCAGCTGTAGCCTATGGTAACCCGAATGCTGGTTATGGAAGTGGTCCTCAAGGTGGACCTAGAAGTTCATGGTCAGCTCAAGCTCCCTCTGGGTATGGGGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCGGTAGGCAATGCTGGAGCTGGCAGTGGTGGACCCGGATCTGCACCCACTGGTCAGTCTCCTGGTGGAGCTGCTGGGTATGGCAATCAGGGTTATGGATACAGTGGGTTTGGTAATCAAGGTTATGGTTACAGTGGAGGTGATGGCTCATATGGGACTCAATCTGGTTATGGTACAGCCGGAGGACGTTCGGGTAATCCCTTGAATAGCAATGTTGGGGGTGGTCCTAATGGGGGAGAATTACAAGGGAACAGTGGTGCCTACATGGGTAATGGCTATGGAGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGGTCTGATGGAGGACAAGTAGGTTATACTGGTGGTTATGCCAGCGGACAAGCTCGACAAACCCAACAACAGTAA

Protein sequence

MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGLPPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNGKQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGSSGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNPNAGYGSGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGYGNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGAYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ

Homology

[Close]

BLAST of Sed0012588.1 vs. NCBI nr
Match: XP_022138553.1 (heterogeneous nuclear ribonucleoprotein 1-like [Momordica charantia])

HSP 1 Score: 793.1 bits (2047), Expect = 1.3e-225
Identity = 417/464 (89.87%), Postives = 438/464 (94.40%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL+++F  YG+V+HTVVMRDKITSRPRGFGFVVF+DP++L
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFGNYGDVLHTVVMRDKITSRPRGFGFVVFADPAIL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL++KHTIDGK VEAKRALSREEQQTPAR GNSNATRN GGG GGG+MRTKKIFVGGL
Sbjct: 61  DRVLQEKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNSGGGSGGGSMRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFEA+G VTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGGGAG GGYQSYGSSGG NSNSYDNRMDSNRYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGGGAGGGGYQSYGSSGGANSNSYDNRMDSNRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
           SGGFPPYGSSGYNNPGYGYGSS NGMGYGGYGNYSGSN GYGAPAAVAYGNP   NAGYG
Sbjct: 241 SGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNVANAGYG 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           SGPQGGPRS+WS QAPSGYGAMGYGNAAPWGGA   NAGAGSGGPGSAPTG SPGGAAGY
Sbjct: 301 SGPQGGPRSTWSGQAPSGYGAMGYGNAAPWGGAAGNNAGAGSGGPGSAPTGHSPGGAAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
           GNQGYGY GFGNQGYGY GGDGSYG+QSGYG AGGRSG+  NSNVGGGP+GGELQGNSG 
Sbjct: 361 GNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGAAGGRSGSASNSNVGGGPSGGELQGNSGG 420

Query: 421 YMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           YMGNGYGDANGN+GYGNAAWRSDGGQVGYTGGYA+GQARQ QQQ
Sbjct: 421 YMGNGYGDANGNSGYGNAAWRSDGGQVGYTGGYAAGQARQAQQQ 464

[Close]

BLAST of Sed0012588.1 vs. NCBI nr
Match: XP_038874312.1 (heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida])

HSP 1 Score: 783.9 bits (2023), Expect = 7.7e-223
Identity = 420/465 (90.32%), Postives = 438/465 (94.19%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL+++F+ YGEVMHTVVMRDKITSRPRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKHTIDGK VEAKRALSREEQQTPAR  NSNATRN  G GGGGNM+TKKIFVGGL
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRN-SGSGGGGNMKTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFEA+G VTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQ YGSSGG+NSNSYDNRMDSNRYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
           SGGFPPYGSSGYNNPGYGYGSS NGMGYGGYGNYSGSN GYGAPAAVAYGNP   NAGYG
Sbjct: 241 SGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNVANAGYG 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGG-AAG 360
           SGPQGGPR+SWS QA SGYGAMGYGNAAPWGGAP GNAGAGSGGPGSAPTG SPGG AAG
Sbjct: 301 SGPQGGPRNSWSGQASSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAG 360

Query: 361 YGNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSG 420
           YGNQGYGY GFGNQGYGY GGDGSYG+QSGYGT GGRSG+  NSNVGGGP+GGELQGN+ 
Sbjct: 361 YGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRSGSASNSNVGGGPSGGELQGNN- 420

Query: 421 AYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           A+MGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYA GQARQ QQQ
Sbjct: 421 AFMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 463

[Close]

BLAST of Sed0012588.1 vs. NCBI nr
Match: KAG7026154.1 (Heterogeneous nuclear ribonucleoprotein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 783.1 bits (2021), Expect = 1.3e-222
Identity = 415/464 (89.44%), Postives = 433/464 (93.32%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL++HF  YGEVMHTVVMRDKITS+PRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDHFNSYGEVMHTVVMRDKITSKPRGFGFVVFADPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKHTIDGK VEAKRALSREEQQTPAR GN NATRN     GGGNMRTKKIFVGGL
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNLNATRN----SGGGNMRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFE +GDVTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFETYGDVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGG AGSGGYQ+YGSSGG+NSNSYD+RMDSNRYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGGSAGSGGYQTYGSSGGVNSNSYDSRMDSNRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
           SGGFPPYGSSGYNNPGYGYGSS NGMGYGGYGNYSGSN GYGAP+AVAYGNP   NAGY 
Sbjct: 241 SGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPSAVAYGNPNVANAGYA 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAP GNAGAGSGGPGSAPTG SPGGAAGY
Sbjct: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
           GNQGYGY GFGNQGYGY GGDGSYG+QSGYGT GGRSG+  NSNVGGGP+GGELQGNSG 
Sbjct: 361 GNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGELQGNSGG 420

Query: 421 YMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           YM +GYGDANGNTGYGNA WRSDGGQVGYTGGY   QARQ+QQQ
Sbjct: 421 YMNSGYGDANGNTGYGNAGWRSDGGQVGYTGGYGGAQARQSQQQ 460

[Close]

BLAST of Sed0012588.1 vs. NCBI nr
Match: XP_023000503.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 783.1 bits (2021), Expect = 1.3e-222
Identity = 415/464 (89.44%), Postives = 433/464 (93.32%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL++HF  YGEVMHTVVMRDKITS+PRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDHFNSYGEVMHTVVMRDKITSKPRGFGFVVFADPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKHTIDGK VEAKRALSREEQQTPAR GN NATRN     GGGNMRTKKIFVGGL
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNLNATRN----SGGGNMRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFE +GDVTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFETYGDVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGG A SGGYQ+YGSSGG+NSNSYD+RMDSNRYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGGSASSGGYQTYGSSGGVNSNSYDSRMDSNRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
           SGGFPPYGSSGYNNPGYGYGSS NGMGYGGYGNYSGSN GYGAP+AVAYGNP   NAGY 
Sbjct: 241 SGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPSAVAYGNPNVANAGYA 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAP GNAGAGSGGPGSAPTG SPGGAAGY
Sbjct: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
           GNQGYGY GFGNQGYGY GGDGSYG+QSGYGT GGRSG+  NSNVGGGP+GGELQGNSG 
Sbjct: 361 GNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGELQGNSGG 420

Query: 421 YMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           YM +GYGDANGNTGYGNA WRSDGGQVGYTGGY  GQARQ+QQQ
Sbjct: 421 YMNSGYGDANGNTGYGNAGWRSDGGQVGYTGGYGGGQARQSQQQ 460

[Close]

BLAST of Sed0012588.1 vs. NCBI nr
Match: XP_022959237.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata])

HSP 1 Score: 782.3 bits (2019), Expect = 2.2e-222
Identity = 417/465 (89.68%), Postives = 434/465 (93.33%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL+++F+ YGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKHTIDGK VEAKRALSREEQQTPAR  NSNATRN GGGGGGGNMRTKKIFVGGL
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGNMRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFEA+G VTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGG    GGYQ YGSSGG+NSNSYD+ MDS+RYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGG----GGYQGYGSSGGVNSNSYDSHMDSSRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
            GGFPPYGSSGY+NPGYGYGSS NGMGYGGYGNYSGSN GYGAPAAVAYGNP   NAGYG
Sbjct: 241 GGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYG 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           SGPQGGPRSSWS QAPSGYGAMGYGNAAPWGGAP GNAGAGSGGPGSAPTG SPGGAAGY
Sbjct: 301 SGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
           GNQGYGY G GNQGYGY GGDGSYG+QSGYGT GGRSG+  NSNVGGGP+GGE+QGNSG 
Sbjct: 361 GNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGG 420

Query: 421 YMGNGYGDANG-NTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           YMGNGYGDANG NTGYGNAAWRSDGGQVGYTGGYA GQARQ QQQ
Sbjct: 421 YMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 461

[Close]

BLAST of Sed0012588.1 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.7e-124
Identity = 276/462 (59.74%), Postives = 313/462 (67.75%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLF+GGISW+T EDKLR HF  YGEV   +VMRDK+T RPRGFGFV+FSDPSVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL++KH+ID + V+ KRA+SREEQQ   RTGN N +R+    GG    +TKKIFVGGL
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRS---SGGDAYNKTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLT+E F++YFE +G VTDV +MYDQ T RPRGFGF+SFD+E++VD VLHKTFHDL+G
Sbjct: 121 PPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPG GGRSMGGG GSGGYQ YG     N +SYD RMDSNR++Q Q  
Sbjct: 181 KQVEVKRALPKDANPGGGGRSMGGG-GSGGYQGYGG----NESSYDGRMDSNRFLQHQSV 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGN---PNAGYG 300
             G P YGSSGY   G GYG+ +NG GYG YG Y+GS  GYGA A   YG    P AGYG
Sbjct: 241 GNGLPSYGSSGY---GAGYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIPGAGYG 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           S     PR+SW   A SGYG  GYG+         G A +G G PG+AP  QSP   +GY
Sbjct: 301 SSTGVAPRNSWDTPASSGYGNPGYGS---------GAAHSGYGVPGAAPPTQSP---SGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
            NQGYGY        GYSG D  YG Q+ YG  GGR         GGG N       SG 
Sbjct: 361 SNQGYGYG-------GYSGSDSGYGNQAAYGVVGGRPS-------GGGSN----NPGSGG 411

Query: 421 YMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQ 460
           YMG GYGD          +WRSD  Q GY GGY  GQ RQ Q
Sbjct: 421 YMGGGYGD---------GSWRSDPSQ-GYGGGYNDGQGRQGQ 411

[Close]

BLAST of Sed0012588.1 vs. ExPASy Swiss-Prot
Match: Q8BG05 (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.8e-36
Identity = 153/433 (35.33%), Postives = 203/433 (46.88%), Query Frame = 0


Query: 7   KLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLRD 66
           KLFIGG+S++TT+D LR HF  +G +   VVMRD  T R RGFGFV +S    +D  +  
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 67  K-HTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGLPPTLT 126
           + H +DG+ VE KRA+SRE+   P                 G ++  KKIFVGG+     
Sbjct: 96  RPHKVDGRVVEPKRAVSREDSVKP-----------------GAHLTVKKIFVGGIKEDTE 155

Query: 127 EEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNGKQVEV 186
           E   ++YFE +G +  + VM D+ + + RGF F++FD  ++VD+++ + +H +NG   EV
Sbjct: 156 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 215

Query: 187 KRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGSSGGFP 246
           K+AL K     AG +  G G GSG +   G + G                   G  G F 
Sbjct: 216 KKALSKQEMQSAGSQ-RGRGGGSGNFMGRGGNFG-------------------GGGGNFG 275

Query: 247 PYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNPNAGYGSGPQGGPR 306
             G+ G    GYG      G G G  G+Y G + GY       +G     YG GP     
Sbjct: 276 RGGNFG-GRGGYG------GGGGGSRGSYGGGDGGYN-----GFGGDGGNYGGGP----- 335

Query: 307 SSWSAQAPSGYGAM-GYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGYGNQGYG- 366
                    GY +  GYG     GG   GN G G GG G    G + GG  G GN G G 
Sbjct: 336 ---------GYSSRGGYGG----GGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGG 376

Query: 367 -YSGFGNQGYGYSGGDGS-YGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGAYMGN 426
            Y+ FGN    YSG   S YG   G G+ GGRS                    SG+  G 
Sbjct: 396 NYNDFGN----YSGQQQSNYGPMKG-GSFGGRS--------------------SGSPYGG 376

Query: 427 GYGDANGNTGYGN 435
           GYG   G+ GYG+
Sbjct: 456 GYGSGGGSGGYGS 376

[Close]

BLAST of Sed0012588.1 vs. ExPASy Swiss-Prot
Match: Q6URK4 (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.8e-36
Identity = 153/433 (35.33%), Postives = 203/433 (46.88%), Query Frame = 0


Query: 7   KLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLRD 66
           KLFIGG+S++TT+D LR HF  +G +   VVMRD  T R RGFGFV +S    +D  +  
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 67  K-HTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGLPPTLT 126
           + H +DG+ VE KRA+SRE+   P                 G ++  KKIFVGG+     
Sbjct: 96  RPHKVDGRVVEPKRAVSREDSVKP-----------------GAHLTVKKIFVGGIKEDTE 155

Query: 127 EEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNGKQVEV 186
           E   ++YFE +G +  + VM D+ + + RGF F++FD  ++VD+++ + +H +NG   EV
Sbjct: 156 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 215

Query: 187 KRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGSSGGFP 246
           K+AL K     AG +  G G GSG +   G + G                   G  G F 
Sbjct: 216 KKALSKQEMQSAGSQ-RGRGGGSGNFMGRGGNFG-------------------GGGGNFG 275

Query: 247 PYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNPNAGYGSGPQGGPR 306
             G+ G    GYG      G G G  G+Y G + GY       +G     YG GP     
Sbjct: 276 RGGNFG-GRGGYG------GGGGGSRGSYGGGDGGYN-----GFGGDGGNYGGGP----- 335

Query: 307 SSWSAQAPSGYGAM-GYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGYGNQGYG- 366
                    GY +  GYG     GG   GN G G GG G    G + GG  G GN G G 
Sbjct: 336 ---------GYSSRGGYGG----GGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGG 376

Query: 367 -YSGFGNQGYGYSGGDGS-YGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGAYMGN 426
            Y+ FGN    YSG   S YG   G G+ GGRS                    SG+  G 
Sbjct: 396 NYNDFGN----YSGQQQSNYGPMKG-GSFGGRS--------------------SGSPYGG 376

Query: 427 GYGDANGNTGYGN 435
           GYG   G+ GYG+
Sbjct: 456 GYGSGGGSGGYGS 376

[Close]

BLAST of Sed0012588.1 vs. ExPASy Swiss-Prot
Match: P51991 (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens OX=9606 GN=HNRNPA3 PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 5.7e-35
Identity = 149/435 (34.25%), Postives = 201/435 (46.21%), Query Frame = 0


Query: 7   KLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLRD 66
           KLFIGG+S++TT+D LR HF  +G +   VVMRD  T R RGFGFV +S    +D  +  
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 67  K-HTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGLPPTLT 126
           + H +DG+ VE KRA+SRE+   P                 G ++  KKIFVGG+     
Sbjct: 96  RPHKVDGRVVEPKRAVSREDSVKP-----------------GAHLTVKKIFVGGIKEDTE 155

Query: 127 EEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNGKQVEV 186
           E   ++YFE +G +  + VM D+ + + RGF F++FD  ++VD+++ + +H +NG   EV
Sbjct: 156 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEV 215

Query: 187 KRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGSSGGFP 246
           K+AL K     AG +  G G GSG +   G + G                   G  G F 
Sbjct: 216 KKALSKQEMQSAGSQ-RGRGGGSGNFMGRGGNFG-------------------GGGGNFG 275

Query: 247 PYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNPNAGYGSGPQGGPR 306
             G+ G               G GGYG   G + G       +YG  + GY         
Sbjct: 276 RGGNFG---------------GRGGYGGGGGGSRG-------SYGGGDGGY--------- 335

Query: 307 SSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGYGNQGYGYS 366
                   +G+G               G+ G   GGPG +  G   GG  GYGNQG GY 
Sbjct: 336 --------NGFG---------------GDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYG 375

Query: 367 GFGN-QGYGYSG--GDGSYGTQSGYGTAGGRSGNPLNSNVG---GGPNGGELQGNSGAYM 426
           G G   GY   G  G G+YG    Y   G  SG    SN G   GG  GG    +SG+  
Sbjct: 396 GGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQ-QSNYGPMKGGSFGGR---SSGSPY 375

Query: 427 GNGYGDANGNTGYGN 435
           G GYG   G+ GYG+
Sbjct: 456 GGGYGSGGGSGGYGS 375

[Close]

BLAST of Sed0012588.1 vs. ExPASy Swiss-Prot
Match: P48809 (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 3.7e-34
Identity = 149/431 (34.57%), Postives = 214/431 (49.65%), Query Frame = 0


Query: 2   DSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLD 61
           + ++GKLF+GG+SW+TT++ L  +F  +G+++  VVM++  + R RGFGFV F+DP+ ++
Sbjct: 3   EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62

Query: 62  RVLRD-KHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 121
            VL++  HT+DG+ ++ K    R  Q+ P +              GGG     K+F+GGL
Sbjct: 63  HVLQNGPHTLDGRTIDPKPCNPRTLQK-PKK--------------GGG----YKVFLGGL 122

Query: 122 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 181
           P  +TE   + +F  +G VT+VV+MYDQ  ++ RGFGF+SF+ E SV+ V ++ + +LNG
Sbjct: 123 PSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNG 182

Query: 182 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 241
           KQVE+K+A P+D   G+GG++       G   +YG  G   S+   +    N      G 
Sbjct: 183 KQVEIKKAEPRD---GSGGQNSNNSTVGG---AYGKLGNECSHWGPHHAPINMMQGQNGQ 242

Query: 242 SGGFPPYGSSGYNN--PGY-GYGSSTNGMGYGGYGNYS-GSNAGYGAPAAVA-------- 301
            GG P     G  N  PGY G+G+S     Y GYGN   GS  G+GAP            
Sbjct: 243 MGGPPLNMPIGAPNMMPGYQGWGTSPQQQQY-GYGNSGPGSYQGWGAPPGPQGPPPQWSN 302

Query: 302 YGNP--NAGYGSGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSG------ 361
           Y  P    GYG        S+ +   PSG G+    N  P    P G  GAG+G      
Sbjct: 303 YAGPQQTQGYGGYDMYNSTSTGAPSGPSGGGSWNSWNMPPNSAGPTGAPGAGAGTATDMY 362

Query: 362 --------------GPGSAPTGQSPGGAAGYGNQGYGYSGFGNQGYGYSGGDGSYGTQSG 395
                         GP        PG +A      Y Y G+G+   GY     +Y  Q G
Sbjct: 363 SRAQAWATGGPSTTGPVGGMPRTGPGNSASKSGSEYDYGGYGS---GYDYDYSNYVKQEG 403

[Close]

BLAST of Sed0012588.1 vs. ExPASy TrEMBL
Match: A0A6J1CDB1 (heterogeneous nuclear ribonucleoprotein 1-like OS=Momordica charantia OX=3673 GN=LOC111009685 PE=4 SV=1)

HSP 1 Score: 793.1 bits (2047), Expect = 6.2e-226
Identity = 417/464 (89.87%), Postives = 438/464 (94.40%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL+++F  YG+V+HTVVMRDKITSRPRGFGFVVF+DP++L
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFGNYGDVLHTVVMRDKITSRPRGFGFVVFADPAIL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL++KHTIDGK VEAKRALSREEQQTPAR GNSNATRN GGG GGG+MRTKKIFVGGL
Sbjct: 61  DRVLQEKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNSGGGSGGGSMRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFEA+G VTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGGGAG GGYQSYGSSGG NSNSYDNRMDSNRYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGGGAGGGGYQSYGSSGGANSNSYDNRMDSNRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
           SGGFPPYGSSGYNNPGYGYGSS NGMGYGGYGNYSGSN GYGAPAAVAYGNP   NAGYG
Sbjct: 241 SGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNVANAGYG 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           SGPQGGPRS+WS QAPSGYGAMGYGNAAPWGGA   NAGAGSGGPGSAPTG SPGGAAGY
Sbjct: 301 SGPQGGPRSTWSGQAPSGYGAMGYGNAAPWGGAAGNNAGAGSGGPGSAPTGHSPGGAAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
           GNQGYGY GFGNQGYGY GGDGSYG+QSGYG AGGRSG+  NSNVGGGP+GGELQGNSG 
Sbjct: 361 GNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGAAGGRSGSASNSNVGGGPSGGELQGNSGG 420

Query: 421 YMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           YMGNGYGDANGN+GYGNAAWRSDGGQVGYTGGYA+GQARQ QQQ
Sbjct: 421 YMGNGYGDANGNSGYGNAAWRSDGGQVGYTGGYAAGQARQAQQQ 464

[Close]

BLAST of Sed0012588.1 vs. ExPASy TrEMBL
Match: A0A6J1KMT7 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111494753 PE=4 SV=1)

HSP 1 Score: 783.1 bits (2021), Expect = 6.4e-223
Identity = 415/464 (89.44%), Postives = 433/464 (93.32%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL++HF  YGEVMHTVVMRDKITS+PRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDHFNSYGEVMHTVVMRDKITSKPRGFGFVVFADPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKHTIDGK VEAKRALSREEQQTPAR GN NATRN     GGGNMRTKKIFVGGL
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNLNATRN----SGGGNMRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFE +GDVTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFETYGDVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGG A SGGYQ+YGSSGG+NSNSYD+RMDSNRYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGGSASSGGYQTYGSSGGVNSNSYDSRMDSNRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
           SGGFPPYGSSGYNNPGYGYGSS NGMGYGGYGNYSGSN GYGAP+AVAYGNP   NAGY 
Sbjct: 241 SGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPSAVAYGNPNVANAGYA 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAP GNAGAGSGGPGSAPTG SPGGAAGY
Sbjct: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
           GNQGYGY GFGNQGYGY GGDGSYG+QSGYGT GGRSG+  NSNVGGGP+GGELQGNSG 
Sbjct: 361 GNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGELQGNSGG 420

Query: 421 YMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           YM +GYGDANGNTGYGNA WRSDGGQVGYTGGY  GQARQ+QQQ
Sbjct: 421 YMNSGYGDANGNTGYGNAGWRSDGGQVGYTGGYGGGQARQSQQQ 460

[Close]

BLAST of Sed0012588.1 vs. ExPASy TrEMBL
Match: A0A6J1H3Z2 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460283 PE=4 SV=1)

HSP 1 Score: 782.3 bits (2019), Expect = 1.1e-222
Identity = 417/465 (89.68%), Postives = 434/465 (93.33%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL+++F+ YGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKHTIDGK VEAKRALSREEQQTPAR  NSNATRN GGGGGGGNMRTKKIFVGGL
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGNMRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFEA+G VTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGG    GGYQ YGSSGG+NSNSYD+ MDS+RYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGG----GGYQGYGSSGGVNSNSYDSHMDSSRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
            GGFPPYGSSGY+NPGYGYGSS NGMGYGGYGNYSGSN GYGAPAAVAYGNP   NAGYG
Sbjct: 241 GGGFPPYGSSGYSNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNAANAGYG 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           SGPQGGPRSSWS QAPSGYGAMGYGNAAPWGGAP GNAGAGSGGPGSAPTG SPGGAAGY
Sbjct: 301 SGPQGGPRSSWSTQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
           GNQGYGY G GNQGYGY GGDGSYG+QSGYGT GGRSG+  NSNVGGGP+GGE+QGNSG 
Sbjct: 361 GNQGYGYGGLGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGEIQGNSGG 420

Query: 421 YMGNGYGDANG-NTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           YMGNGYGDANG NTGYGNAAWRSDGGQVGYTGGYA GQARQ QQQ
Sbjct: 421 YMGNGYGDANGNNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 461

[Close]

BLAST of Sed0012588.1 vs. ExPASy TrEMBL
Match: A0A6J1HK79 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111464301 PE=4 SV=1)

HSP 1 Score: 781.2 bits (2016), Expect = 2.4e-222
Identity = 414/464 (89.22%), Postives = 432/464 (93.10%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL++HF  YGEVMHTVVMRDKITS+PRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDHFNSYGEVMHTVVMRDKITSKPRGFGFVVFADPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKHTIDGK VEAKRALSREEQQTPAR GN NATRN     GGGNMRTKKIFVGGL
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNLNATRN----SGGGNMRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFE +GDVTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 121 PPTLTEEGFKEYFETYGDVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGRSMGG AGSGGYQ+YGSSGG+NSNSYD+RMDSNRYMQSQGS
Sbjct: 181 KQVEVKRALPKDANPGAGGRSMGGSAGSGGYQTYGSSGGVNSNSYDSRMDSNRYMQSQGS 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
           SGGFPPYGSSGYNNPGYGYGSS NGMGYGGYGNYSGSN GYGAP+AVAYGNP   NAGY 
Sbjct: 241 SGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPSAVAYGNPNVANAGYA 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAP GNAGAGSGGPGSAPTG SPGGAAGY
Sbjct: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
           GNQGYGY GFGNQGYGY GGDGSYG+QSGYGT GGRSG+  NSNVGGGP+GGELQGNSG 
Sbjct: 361 GNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTGGGRSGSASNSNVGGGPSGGELQGNSGG 420

Query: 421 YMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           YM +GYGDANGNTGYGNA WRSDGGQVGYTGGY   QAR +QQQ
Sbjct: 421 YMNSGYGDANGNTGYGNAGWRSDGGQVGYTGGYGGAQARHSQQQ 460

[Close]

BLAST of Sed0012588.1 vs. ExPASy TrEMBL
Match: A0A0A0LLG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171930 PE=4 SV=1)

HSP 1 Score: 773.5 bits (1996), Expect = 5.1e-220
Identity = 417/465 (89.68%), Postives = 434/465 (93.33%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLFIGGISW+T+EDKL+++F+ YGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 107 MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 166

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKHTIDGK VEAKRALSREEQQTPAR  NSN  RN  GG GGGNMRTKKIFVGGL
Sbjct: 167 DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNG-RN-SGGSGGGNMRTKKIFVGGL 226

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLTEEGFKEYFEA+G VTDVVVMYDQNTRRPRGFGFISFDTEE+VDRVLHKTFHDLNG
Sbjct: 227 PPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNG 286

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPGAGGR+M GGAGSGGYQ YGSSGG+NSNSYDNRMDSNRYMQSQGS
Sbjct: 287 KQVEVKRALPKDANPGAGGRTMSGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGS 346

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNP---NAGYG 300
           SGGFPPYGSSGYNNP YGYGSS NGMGYGGYGNYSGSN G+GAP AVAYGNP   NAGYG
Sbjct: 347 SGGFPPYGSSGYNNPAYGYGSSNNGMGYGGYGNYSGSNTGFGAPTAVAYGNPNVANAGYG 406

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGG-AAG 360
           SGPQGGPR+SWS QAPSGYGAMGYGNAAPWGGAP GNAGAGSGGPGSAPTG SPGG AAG
Sbjct: 407 SGPQGGPRNSWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAG 466

Query: 361 YGNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSG 420
           YGNQGYGY GFGNQGYGY GGDGSYG+QSGYGT GGRSG+  NSNVGGGP+GGELQGN+ 
Sbjct: 467 YGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRSGSASNSNVGGGPSGGELQGNN- 526

Query: 421 AYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
           AYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYA GQARQ QQQ
Sbjct: 527 AYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 568

[Close]

BLAST of Sed0012588.1 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 447.6 bits (1150), Expect = 1.2e-125
Identity = 276/462 (59.74%), Postives = 313/462 (67.75%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           MDSDQGKLF+GGISW+T EDKLR HF  YGEV   +VMRDK+T RPRGFGFV+FSDPSVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL++KH+ID + V+ KRA+SREEQQ   RTGN N +R+    GG    +TKKIFVGGL
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRS---SGGDAYNKTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PPTLT+E F++YFE +G VTDV +MYDQ T RPRGFGF+SFD+E++VD VLHKTFHDL+G
Sbjct: 121 PPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPG GGRSMGGG GSGGYQ YG     N +SYD RMDSNR++Q Q  
Sbjct: 181 KQVEVKRALPKDANPGGGGRSMGGG-GSGGYQGYGG----NESSYDGRMDSNRFLQHQSV 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGN---PNAGYG 300
             G P YGSSGY   G GYG+ +NG GYG YG Y+GS  GYGA A   YG    P AGYG
Sbjct: 241 GNGLPSYGSSGY---GAGYGNGSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIPGAGYG 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           S     PR+SW   A SGYG  GYG+         G A +G G PG+AP  QSP   +GY
Sbjct: 301 SSTGVAPRNSWDTPASSGYGNPGYGS---------GAAHSGYGVPGAAPPTQSP---SGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
            NQGYGY        GYSG D  YG Q+ YG  GGR         GGG N       SG 
Sbjct: 361 SNQGYGYG-------GYSGSDSGYGNQAAYGVVGGRPS-------GGGSN----NPGSGG 411

Query: 421 YMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQ 460
           YMG GYGD          +WRSD  Q GY GGY  GQ RQ Q
Sbjct: 421 YMGGGYGD---------GSWRSDPSQ-GYGGGYNDGQGRQGQ 411

[Close]

BLAST of Sed0012588.1 vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 435.3 bits (1118), Expect = 6.3e-122
Identity = 271/465 (58.28%), Postives = 317/465 (68.17%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           M+SDQGKLFIGGISWDT E+ LR +F+ +GEV+   VMR+K T RPRGFGFV FSDP+V+
Sbjct: 1   MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           DRVL+DKH ID + V+ KRA+SREEQ    R+G  NA+RN      G N+RTKKIFVGGL
Sbjct: 61  DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNF---DSGANVRTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           PP LT + F+ YFE +G V+D V+M DQ T+RPRGFGF+SFD+E+SVD VLHKTFHDLNG
Sbjct: 121 PPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNG 180

Query: 181 KQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGLNSNSYDNRMDSNRYMQSQGS 240
           KQVEVKRALPKDANPG       G  G+GG+  YG SGG   + Y+ R+DSNRYMQ Q +
Sbjct: 181 KQVEVKRALPKDANPGIASGGGRGSGGAGGFPGYGGSGG---SGYEGRVDSNRYMQPQNT 240

Query: 241 SGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNPN---AGYG 300
             G+PPYG SGY   GYGYGS  NG+GYGG+G       GYG PA   YGNP+   AG+G
Sbjct: 241 GSGYPPYGGSGYGT-GYGYGS--NGVGYGGFG-------GYGNPAGAPYGNPSVPGAGFG 300

Query: 301 SGPQGGPRSSWSAQAPSGYGAMGYGNAAPWGGAPVGNAGAGSGGPGSAPTGQSPGGAAGY 360
           S    GPRSSW AQAPSGYG +GYGNAAPWG         GSGGPGSA  GQ+ G +AGY
Sbjct: 301 S----GPRSSWGAQAPSGYGNVGYGNAAPWG---------GSGGPGSAVMGQA-GASAGY 360

Query: 361 GNQGYGYSGFGNQGYGYSGGDGSYGTQSGYGTAGGRSGNPLNSNVGGGPNGGELQGNSGA 420
                     G+QGYGY G D SYGT S YG  GGRSGN  N++ GG             
Sbjct: 361 ----------GSQGYGYGGNDSSYGTPSAYGAVGGRSGNMPNNHGGG------------- 404

Query: 421 YMGNGYGDA-NGNTGYGNAAWRSDGGQVGYTGGYASGQARQTQQQ 462
               GY DA +G+ GYGN   + + GQ GY GGY SG  RQ QQQ
Sbjct: 421 ----GYADALDGSGGYGN--HQGNNGQAGYGGGYGSG--RQAQQQ 404

[Close]

BLAST of Sed0012588.1 vs. TAIR 10
Match: AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 3.3e-62
Identity = 162/373 (43.43%), Postives = 210/373 (56.30%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           M+SD GKLFIGGISWDT E++LR++F+ YG+V+  V+MRD+ T R RGFGF+VF+DP V 
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           +RV+ DKH IDG+ VEAK+A+ R++QQ   R  +     +   GGGG   RTKKIFVGGL
Sbjct: 61  ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGG---RTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           P ++TEE FK YF+ FG + DVVVMYD NT+RPRGFGFI+FD++++VDRVLHKTFH+LNG
Sbjct: 121 PSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNG 180

Query: 181 KQVEVKRALPKDANPG-------AGGRSMGGGA--------------GSGGYQSYGSSG- 240
           K VEVKRA+PK+ +P        A G + GGG+              G G Y S G  G 
Sbjct: 181 KLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGR 240

Query: 241 ------------------GLN------------------------SNSYDNRMDSNRYMQ 300
                             GLN                        SN Y N    NRY  
Sbjct: 241 RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYTS 300

Query: 301 SQGSSGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNPNAGY 308
             G +    PY S+  N   +G  + T G G+    +   +   +G P++ A  N N G+
Sbjct: 301 PIGHNRTESPYNSN--NRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGF 360

[Close]

BLAST of Sed0012588.1 vs. TAIR 10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 3.3e-62
Identity = 162/373 (43.43%), Postives = 210/373 (56.30%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           M+SD GKLFIGGISWDT E++LR++F+ YG+V+  V+MRD+ T R RGFGF+VF+DP V 
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           +RV+ DKH IDG+ VEAK+A+ R++QQ   R  +     +   GGGG   RTKKIFVGGL
Sbjct: 61  ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGG---RTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           P ++TEE FK YF+ FG + DVVVMYD NT+RPRGFGFI+FD++++VDRVLHKTFH+LNG
Sbjct: 121 PSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNG 180

Query: 181 KQVEVKRALPKDANPG-------AGGRSMGGGA--------------GSGGYQSYGSSG- 240
           K VEVKRA+PK+ +P        A G + GGG+              G G Y S G  G 
Sbjct: 181 KLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGR 240

Query: 241 ------------------GLN------------------------SNSYDNRMDSNRYMQ 300
                             GLN                        SN Y N    NRY  
Sbjct: 241 RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYTS 300

Query: 301 SQGSSGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNPNAGY 308
             G +    PY S+  N   +G  + T G G+    +   +   +G P++ A  N N G+
Sbjct: 301 PIGHNRTESPYNSN--NRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGF 360

[Close]

BLAST of Sed0012588.1 vs. TAIR 10
Match: AT5G55550.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 3.3e-62
Identity = 162/373 (43.43%), Postives = 210/373 (56.30%), Query Frame = 0


Query: 1   MDSDQGKLFIGGISWDTTEDKLRNHFAVYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60
           M+SD GKLFIGGISWDT E++LR++F+ YG+V+  V+MRD+ T R RGFGF+VF+DP V 
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 61  DRVLRDKHTIDGKPVEAKRALSREEQQTPARTGNSNATRNLGGGGGGGNMRTKKIFVGGL 120
           +RV+ DKH IDG+ VEAK+A+ R++QQ   R  +     +   GGGG   RTKKIFVGGL
Sbjct: 61  ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGG---RTKKIFVGGL 120

Query: 121 PPTLTEEGFKEYFEAFGDVTDVVVMYDQNTRRPRGFGFISFDTEESVDRVLHKTFHDLNG 180
           P ++TEE FK YF+ FG + DVVVMYD NT+RPRGFGFI+FD++++VDRVLHKTFH+LNG
Sbjct: 121 PSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNG 180

Query: 181 KQVEVKRALPKDANPG-------AGGRSMGGGA--------------GSGGYQSYGSSG- 240
           K VEVKRA+PK+ +P        A G + GGG+              G G Y S G  G 
Sbjct: 181 KLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGR 240

Query: 241 ------------------GLN------------------------SNSYDNRMDSNRYMQ 300
                             GLN                        SN Y N    NRY  
Sbjct: 241 RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYTS 300

Query: 301 SQGSSGGFPPYGSSGYNNPGYGYGSSTNGMGYGGYGNYSGSNAGYGAPAAVAYGNPNAGY 308
             G +    PY S+  N   +G  + T G G+    +   +   +G P++ A  N N G+
Sbjct: 301 PIGHNRTESPYNSN--NRDLWGNRTDTAGPGWNLNVSNGNNRGNWGLPSSSAVSNDNNGF 360

The following BLAST results are available for this feature:

BLAST of Sed0012588.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138553.1	1.3e-225	89.87	heterogeneous nuclear ribonucleoprotein 1-like [Momordica charantia]	[more]
XP_038874312.1	7.7e-223	90.32	heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida]	[more]
KAG7026154.1	1.3e-222	89.44	Heterogeneous nuclear ribonucleoprotein 1 [Cucurbita argyrosperma subsp. argyros...	[more]
XP_023000503.1	1.3e-222	89.44	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima]	[more]
XP_022959237.1	2.2e-222	89.68	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata]	[more]

BLAST of Sed0012588.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	1.7e-124	59.74	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q8BG05	8.8e-36	35.33	Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 P...	[more]
Q6URK4	8.8e-36	35.33	Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrn...	[more]
P51991	5.7e-35	34.25	Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens OX=9606 GN=HNRNPA3 PE...	[more]
P48809	3.7e-34	34.57	Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 G...	[more]

BLAST of Sed0012588.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDB1	6.2e-226	89.87	heterogeneous nuclear ribonucleoprotein 1-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1KMT7	6.4e-223	89.44	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1H3Z2	1.1e-222	89.68	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HK79	2.4e-222	89.22	heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0LLG6	5.1e-220	89.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171930 PE=4 SV=1	[more]

BLAST of Sed0012588.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14300.1	1.2e-125	59.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G33410.1	6.3e-122	58.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.1	3.3e-62	43.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.3	3.3e-62	43.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.2	3.3e-62	43.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..78 e-value: 2.6E-20 score: 83.5 coord: 114..186 e-value: 3.7E-25 score: 99.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..75 e-value: 5.3E-13 score: 48.6 coord: 115..173 e-value: 1.1E-16 score: 60.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 113..190 score: 18.887888
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..82 score: 16.278412
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 111..230 e-value: 2.2E-27 score: 97.9 coord: 1..110 e-value: 7.4E-24 score: 86.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..408
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..422
None	No IPR available	PANTHER	PTHR48035	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1	coord: 1..459
None	No IPR available	PANTHER	PTHR48035:SF2	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1	coord: 1..459
None	No IPR available	CDD	cd12325	RRM1_hnRNPA_hnRNPD_like	coord: 8..78 e-value: 7.44479E-35 score: 122.694
IPR034131	DAZ-associated protein 1, RNA recognition motif 2	CDD	cd12327	RRM2_DAZAP1	coord: 111..190 e-value: 8.02552E-46 score: 151.749
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 112..219
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0012588	Sed0012588	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012588.1-five_prime_utr	Sed0012588.1-five_prime_utr-LG09:8095589..8095864	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012588.1-exon	Sed0012588.1-exon-LG09:8095589..8096086	exon
Sed0012588.1-exon	Sed0012588.1-exon-LG09:8098701..8100013	exon
Sed0012588.1-exon	Sed0012588.1-exon-LG09:8100536..8101207	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012588.1-cds	Sed0012588.1-cds-LG09:8095865..8096086	CDS
Sed0012588.1-cds	Sed0012588.1-cds-LG09:8098701..8099864	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012588.1-three_prime_utr	Sed0012588.1-three_prime_utr-LG09:8099865..8100013	three_prime_UTR
Sed0012588.1-three_prime_utr	Sed0012588.1-three_prime_utr-LG09:8100536..8101207	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0012588.1	Sed0012588.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding