Sed0012299.1 (mRNA) Chayote v1

Overview


Name	Sed0012299.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L17
Location	LG03: 41972630 .. 41976840 (+)
Sequence length	900
RNA-Seq Expression	Sed0012299.1
Synteny	Sed0012299.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGAAAGTAAGAGCAAGAATAATAAGGTAAAAAAAGAACATAAGAGATTTGAATTGTTGTAGAAAATTGTTGAAAAAAGGCTCTTTATATAGTGGTAGAAAAAAAAAGTTACAAAACTTTTGAATTTTCTCCATTAAAAAATAAATTATAAGGAAAATAAGTTATAGAATTAAATATATAACTTTTCCAATTCTTTTTTTTTTTAGTACATAGTGGGGGAAGGGGGACCAACAAACCCTATATAGAGGGCACAACTACTCTCAAATAATATGAGAGCTAAATACCGATTTCCGGGCTCTAACTCATTCATTTATCATATATTTATACATAGACATGAGAAGATGTAAAGTTGGTTATATAACTCCTATATAATTATTTCTTAAAAAAAATCCTATATAATTAAAAACATTAAATGAAAAGAAAAAAAACCTACAAATTCATTCATGTATAATTAACTCCTACTTAATTAAAAACATTAAATGAAAAGAAAAAAACCCTACAAATTCACTCATGTATAATTAACTCCTATTTAATTAAAAACATTAAATGAAAAGAAAAACCTAAAGATTTATATTTAAATTTAGTGGCATTTATAAATATTTAAATAATAATATAGAGTGGTATCTTTGAAATTTTAAAACAACTATTGGACAAATTAGTCAAAAAATGATTCTCCTACTAAAGGCACACTTTAAAGTTTTAAGATTAAGATGATGTACAATATATGTACAATGGGTTTGCAGACATAATTAATGGTGTTTATGTTTGATGGTGCTCGTAGTCAATCTCTAGTGTGTAAACAAAGGTATGAGTATATGTTTTGTTCAAGAAAGTTATATCCTCCCCTTCCCAACTTCAAAAGTTTGTTTTTAAAGCTTCCCTCTCAAACTCAAACTTAAATAATGACACAATATCAACTCCAGGTGACTACTCCACTCTATATTTTAATTTAATTTTTAAGTACATGCACACAAATCACATTAACTCATAAGTTACGTATAGGTTAAGGAAGACAATGCTGGTGAAGAACTCTGAAAAAATTAGGCAAAGATTTTTAAATTTTAAAAAATTTCTTCCAACGTTTTACTTGATTTTTGAAATGATGAATCAAAATATTTAATTATATTAGACAAAGATATTTTATCATTATTTATTATTATTATTTTGAATTCTTATTGATTCTTAAGAATAGTTATAGAAAATAAAATTTAAAAATAAAAATTTCGAATTAAGTAGAAAATTTAAAATTTCAAAATCTCTTGACCTTTGTACTTGATTTGTTGATTATTTATTTATGATATTTAATTATGTTTAGGGGCTTTTGCATGTATATTACAAAATAGATAAAATATTACATGAATAGCATAATAATGAAAATATTTGCACATATAGCAAAAATTGTAAATTGATAAACTTCATATTGATAGATTCTATCGATAAAGGGTGATAGAATCAATTACTAATAAATAAAGTAAATTGATAGACTTCCATCAGATTCTATCAAGAGTCTGTCAATAAGAGCCGATAAAATCAATCACTGATAAAATTGATAGACTTCCATCACTAGAGAATGATAGATTCTATCAAAGTCTTCTATAAAAAAGATAAATAATTTTTTTTTTTTAAATGACAGAATTTGCTATAAAAGAATTATTTTTAAAAATGTGCTATAATTGTAAACTGTGGTAAAAAAGTTGCTATACAATGCAAATTCCCTTATGTTTAACTAATATATTTTATTATTATTTAATTTTCTTTTGAATTGTTCCAGGTAGTTACAAAAAATCTATTTTAAAATGGATTAAAAAGTTGAGATGAAATATAGGAAGGGTAGAATTGTCCATTATTTTTAATAATAAATTTTAATTAAAATTTAAAATTAAAAAAAGACATAAATTTAAAATCTAAATATCATTAGACATATTCTTAATTAATTTTTAAATTTTACCCATTTTTCTAGTTATCCCTTTGATTTAAACATAAATTTAAAGTAAAAAAGAAAAATAGACATTCTCTTGATCCATTTGAGTAATTTAGACATTTAATGTGATTTTCCAAAAGATATTACGTAAATGGGCCAAGCCCAACGGAGCCCAGACAAGAATATGGTTGGTCTTCAGCCCACTTGTGACTTTTTTTAGGGTTTTATGGAGTTTGATCTTCGTTGCTTATAAACCTAATTCAAGCGGCTCAGTGCCTCCGTTCACGGCGAAGTCGAACTCTTTTTCAGAACCCGAAGTCGCAGCCGTCACCATGGTTCGTCCTCTATCTTCTTCATTCGTTCTTCGTAACATTGACATCTGAGTTTGAAGTTAGCGATTAATCTTCAATTCCTGCGCTTGTTCATTGTCGCAGGTCAAGTATTCCAGGGAACCCGACAATCACACCAAGTGTATTTTTCTTATGGATCTCGTTTGATTTTTCTTCCAACCTTTGCATTTGTTTTTTGTTTAATCTCTCCTATTTGCTTCAATTTTCTCTGATTGTTTGTTCTTTCTATCCAGCCTGCAAAGCCAGAGGCTCCGACCTCAGAGTCCACTTCAAGGTATGTTTTATTCCGATTCTTTGAGTTTGCATACTTTTAATAATGATCGATTTGAATTTGTACGAGCTAGGGCTTGCATCTGTAGTGATTTGGTGTTGCATTCTCGGTCTAGGAATCTAAGTTTTTTTTATCAATGATGTATGTTCTTGATTCTCGTATTGGCCCTACGCATGTAATTATTTCTGCCCTTTGGCTTAATGTTTTCTTATTGAGTTTCGATTGTACTGTTTTCTACTTAATCTGATGCATAGAATGTTTGAGGATTGATTCATATTCCATAACCCTTTTTTGGGTCAAGTAATTGATTGGCCTGGGACAATATGTACAAGGATGTTTGTGAAACTGTTCGTTCGCCAAATAATTTTATTTTCCTTTGAAGACCTTTTGTCTTTTCCAGGCTTGAGAAGCTAATCTTTATCTTTTTAAATATTCACATTAACTATACCTATAGTCTTCAGCGATACCGCCTGTGACCTGATGATAAAAGCAGGGCTCTGTTGCCTTATGTGAACATGGCTCTCGTAAACATCAGGGAAATTGTGTGTGCATTGTTATTGGGTGAACCTCTGTAACCCATAGTGTCTGAAGGTTCAGTAAACGATGCTACATGTTTTAGTTTGTATCTTGACTTGCATATTTTAGTGCTAAATGTTGCTTTAAGATTGGCTATAATACAATGTTTTTTTATATATATTATAGAACACGAGGGAAACTGCACATGCCATCAGGAAGTTGCCATTGGTTAAGGCCAAGAGGTACTTAGAGGATGTGCTTGCCCACAAACAGGCCATTCCTTTCCGTCGCTTCTGTCGTGGTGTTGGACGAACAGCTCAGGCCAAGAATAGACACTCCAATGGGCAAGGACGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTATGTATTTTTGCTCTCACCCTCAACTGTTTAAGTTTTTCTCTCTGTGGTTTATAAGTATTTCTGTTCTTTCAGGTTAAGGGTTTGGATGTTGATTTGCTTCATGTGTCTCACATCCAAGTTAACCAAGCTCAGAAACAAAGGCGTCGTACATACCGTGCCCATGGAAGAATCAACCGTAAGTTCTGATTACAGTTTGCTCAATATTCTATGGATGTCTGCTTCATCATCCTACGGCCTTCCTTTACATTTTCTTTTGTTTCCTTTTGGTTGGCAGCTTACATGTCTTCTCCGTGCCACATTGAGCTGATTTTGTCTGAGAAAGAAGAGCCTGTCAAAAAGGAGGTAATAAATCAGATTACTTAATTTCATTTGTGCTATGAAAGATAGATTGCTTTAGCCATATTTCTGATTGTTCATTGTTCTTGATGTCACAGCCTGAAACTCAACTGTCGACTGGCAAACCAAAGAAAGGCCAAGCTCTCCGTAGTGGGGCATCCTCTTAATTGGCAATAGTATAAATTCAGACGTGGGTTTTGCTGTGCCATTTCTTTTTTGAAGTGAGTTTAATTATTGATCACTATATAGAACGAAGGATTATTTACTAGACGTTTTGTGATATTTGTTATATTTGGAACCTTTTCTAGTTTAATTTTCTTAAGTTTCTATCAAATTCTGTCTGGTGTATTTATATTTCTTAATGAGATTAGATGAATCCTTGGCATAGTCAA

mRNA sequence

ATGATAAGAAAGGTTTTATGGAGTTTGATCTTCGTTGCTTATAAACCTAATTCAAGCGGCTCAGTGCCTCCGTTCACGGCGAAGTCGAACTCTTTTTCAGAACCCGAAGTCGCAGCCGTCACCATGGTCAAGTATTCCAGGGAACCCGACAATCACACCAAGTCCTGCAAAGCCAGAGGCTCCGACCTCAGAGTCCACTTCAAGAACACGAGGGAAACTGCACATGCCATCAGGAAGTTGCCATTGGTTAAGGCCAAGAGGTACTTAGAGGATGTGCTTGCCCACAAACAGGCCATTCCTTTCCGTCGCTTCTGTCGTGGTGTTGGACGAACAGCTCAGGCCAAGAATAGACACTCCAATGGGCAAGGACGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTTAAGGGTTTGGATGTTGATTTGCTTCATGTGTCTCACATCCAAGTTAACCAAGCTCAGAAACAAAGGCGTCGTACATACCGTGCCCATGGAAGAATCAACCCTTACATGTCTTCTCCGTGCCACATTGAGCTGATTTTGTCTGAGAAAGAAGAGCCTGTCAAAAAGGAGCCTGAAACTCAACTGTCGACTGGCAAACCAAAGAAAGGCCAAGCTCTCCGTAGTGGGGCATCCTCTTAATTGGCAATAGTATAAATTCAGACGTGGGTTTTGCTGTGCCATTTCTTTTTTGAAGTGAGTTTAATTATTGATCACTATATAGAACGAAGGATTATTTACTAGACGTTTTGTGATATTTGTTATATTTGGAACCTTTTCTAGTTTAATTTTCTTAAGTTTCTATCAAATTCTGTCTGGTGTATTTATATTTCTTAATGAGATTAGATGAATCCTTGGCATAGTCAA

Coding sequence (CDS)

ATGATAAGAAAGGTTTTATGGAGTTTGATCTTCGTTGCTTATAAACCTAATTCAAGCGGCTCAGTGCCTCCGTTCACGGCGAAGTCGAACTCTTTTTCAGAACCCGAAGTCGCAGCCGTCACCATGGTCAAGTATTCCAGGGAACCCGACAATCACACCAAGTCCTGCAAAGCCAGAGGCTCCGACCTCAGAGTCCACTTCAAGAACACGAGGGAAACTGCACATGCCATCAGGAAGTTGCCATTGGTTAAGGCCAAGAGGTACTTAGAGGATGTGCTTGCCCACAAACAGGCCATTCCTTTCCGTCGCTTCTGTCGTGGTGTTGGACGAACAGCTCAGGCCAAGAATAGACACTCCAATGGGCAAGGACGCTGGCCTGTCAAATCTGCCAAGTTTATTCTAGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTTAAGGGTTTGGATGTTGATTTGCTTCATGTGTCTCACATCCAAGTTAACCAAGCTCAGAAACAAAGGCGTCGTACATACCGTGCCCATGGAAGAATCAACCCTTACATGTCTTCTCCGTGCCACATTGAGCTGATTTTGTCTGAGAAAGAAGAGCCTGTCAAAAAGGAGCCTGAAACTCAACTGTCGACTGGCAAACCAAAGAAAGGCCAAGCTCTCCGTAGTGGGGCATCCTCTTAA

Protein sequence

MIRKVLWSLIFVAYKPNSSGSVPPFTAKSNSFSEPEVAAVTMVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSGASS

Homology

[Close]

BLAST of Sed0012299.1 vs. NCBI nr
Match: XP_023545223.1 (60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 3.3e-94
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQL+TGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. NCBI nr
Match: XP_038885177.1 (60S ribosomal protein L17-2-like [Benincasa hispida])

HSP 1 Score: 354.4 bits (908), Expect = 7.3e-94
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQL+TGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. NCBI nr
Match: XP_004144196.1 (60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata] >KAG6598615.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.0 bits (907), Expect = 9.6e-94
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQL+TGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. NCBI nr
Match: XP_022997268.1 (60S ribosomal protein L17-2-like [Cucurbita maxima])

HSP 1 Score: 351.7 bits (901), Expect = 4.8e-93
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPETQL+TGKPKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLATGKPKKGQALRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. NCBI nr
Match: XP_008445497.1 (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo])

HSP 1 Score: 350.9 bits (899), Expect = 8.1e-93
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQL+TGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 315.1 bits (806), Expect = 6.5e-85
Identity = 157/176 (89.20%), Postives = 165/176 (93.75%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQA 218
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQL+  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Sed0012299.1 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 7.2e-84
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKG 216
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQL+  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Sed0012299.1 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.3e-77
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYS+EP N TKS KA G DLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RR+C GVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD L+VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGK 212
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  ++  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Sed0012299.1 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-76
Identity = 141/167 (84.43%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYS +P N TKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RR+CRGVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLS 209
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ ++
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Sed0012299.1 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-75
Identity = 140/170 (82.35%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSR+P N TKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RR+CRGVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGK 212
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  ++  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170

[Close]

BLAST of Sed0012299.1 vs. ExPASy TrEMBL
Match: A0A6J1BRY8 (60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.6e-94
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQL+TGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. ExPASy TrEMBL
Match: A0A6J1HHD8 (60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.6e-94
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQL+TGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. ExPASy TrEMBL
Match: A0A6J1KDD3 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492225 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.3e-93
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPETQL+TGKPKKGQALRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLATGKPKKGQALRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. ExPASy TrEMBL
Match: A0A1S3BCV8 (60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.9e-93
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQL+TGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. ExPASy TrEMBL
Match: A0A6J1KKP7 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.0e-92
Identity = 176/183 (96.17%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYSREPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
           RRFC GVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQALRSG 221
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQL+TGK KKG+A+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 222 ASS 225
           ASS
Sbjct: 181 ASS 183

[Close]

BLAST of Sed0012299.1 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 315.1 bits (806), Expect = 4.6e-86
Identity = 157/176 (89.20%), Postives = 165/176 (93.75%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQA 218
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQL+  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Sed0012299.1 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 311.6 bits (797), Expect = 5.1e-85
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKG 216
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQL+  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Sed0012299.1 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-55
Identity = 118/176 (67.05%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 42  MVKYSREPDNHTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 101
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 102 RRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 161
            RFCRGVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNA                 
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNA----------------- 120

Query: 162 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLSTGKPKKGQA 218
                                      ELILSEKEEPVKKEPETQL+  K KK  A
Sbjct: 121 ---------------------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of Sed0012299.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545223.1	3.3e-94	97.27	60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_038885177.1	7.3e-94	97.27	60S ribosomal protein L17-2-like [Benincasa hispida]	[more]
XP_004144196.1	9.6e-94	96.72	60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal prot...	[more]
XP_022997268.1	4.8e-93	96.72	60S ribosomal protein L17-2-like [Cucurbita maxima]	[more]
XP_008445497.1	8.1e-93	96.72	PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo]	[more]

BLAST of Sed0012299.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51413	6.5e-85	89.20	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
Q93VI3	7.2e-84	89.66	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
O48557	1.3e-77	85.29	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	1.4e-76	84.43	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	1.2e-75	82.35	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Sed0012299.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRY8	4.6e-94	96.72	60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 ...	[more]
A0A6J1HHD8	4.6e-94	96.72	60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 P...	[more]
A0A6J1KDD3	2.3e-93	96.72	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492225 PE=...	[more]
A0A1S3BCV8	3.9e-93	96.72	60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV...	[more]
A0A6J1KKP7	2.0e-92	96.17	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=...	[more]

BLAST of Sed0012299.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67430.1	4.6e-86	89.20	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	5.1e-85	89.66	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	1.9e-55	67.05	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 45..195 e-value: 5.3E-60 score: 199.6
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 42..224
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	HAMAP	MF_01331_A	Ribosomal_L22_A	coord: 41..195 score: 24.520769
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 42..222 e-value: 1.0E-74 score: 252.2
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 42..195
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 58..193 e-value: 2.9E-38 score: 130.3
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 56..192 e-value: 2.45207E-36 score: 121.829
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..224
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 42..224
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 168..192

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0012299	Sed0012299	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012299.1-exon	Sed0012299.1-exon-LG03:41972630..41972640	exon
Sed0012299.1-exon	Sed0012299.1-exon-LG03:41974776..41974890	exon
Sed0012299.1-exon	Sed0012299.1-exon-LG03:41974990..41975026	exon
Sed0012299.1-exon	Sed0012299.1-exon-LG03:41975139..41975179	exon
Sed0012299.1-exon	Sed0012299.1-exon-LG03:41975879..41976109	exon
Sed0012299.1-exon	Sed0012299.1-exon-LG03:41976185..41976287	exon
Sed0012299.1-exon	Sed0012299.1-exon-LG03:41976387..41976454	exon
Sed0012299.1-exon	Sed0012299.1-exon-LG03:41976547..41976840	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012299.1-cds	Sed0012299.1-cds-LG03:41972630..41972640	CDS
Sed0012299.1-cds	Sed0012299.1-cds-LG03:41974776..41974890	CDS
Sed0012299.1-cds	Sed0012299.1-cds-LG03:41974990..41975026	CDS
Sed0012299.1-cds	Sed0012299.1-cds-LG03:41975139..41975179	CDS
Sed0012299.1-cds	Sed0012299.1-cds-LG03:41975879..41976109	CDS
Sed0012299.1-cds	Sed0012299.1-cds-LG03:41976185..41976287	CDS
Sed0012299.1-cds	Sed0012299.1-cds-LG03:41976387..41976454	CDS
Sed0012299.1-cds	Sed0012299.1-cds-LG03:41976547..41976615	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012299.1-three_prime_utr	Sed0012299.1-three_prime_utr-LG03:41976616..41976840	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0012299.1	Sed0012299.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome