Sed0011991.1 (mRNA) Chayote v1

Overview


Name	Sed0011991.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein 5, chloroplastic
Location	LG03: 15396340 .. 15398959 (-)
Sequence length	781
RNA-Seq Expression	Sed0011991.1
Synteny	Sed0011991.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAATAGAACTTATCCAAAGGAAGCTAAGGGTTCTCAGACCGGAGCAAACCATCAATGGCTTTTCTTCTCTGCTCCAATCCCCTTCCCACCTCTCTCCTTTCATCGCCATTTCCGCCGTCGCCGTCATGTTTTCCGACGATCTCCGCCGCCGCCACGAGTAAGCCTCTCTTCCTCTCCCCCTACCGGACTTTCCTTTCCGCTTCTCTGTTCGAGGAATCGAACGAATGTTTTTGTCTGATTCTGTATCTTCATTACTCTTCGCACTGCGTGTTAATGCAAGAGGCGGCGAGTTTCTCTTTCACGAACTCGAAGATTTGTTTTATGTACTTGAAAGAATTTCTTGTCGTCATTTTCTTCACAGGCATTTTGTCGAGCAGTTGGTATCTGTGTGTTGAGACTTTTGATTTTACGCTCTTAGTTGATTTGCACTGAATTTCTGTTGTCTGAATCTGTTTTTCTATTTTCTGTAACTTGTGTTGTAAATTCTGACTACTCTGCCTCTTGCTCATCATCCTCGATTTGATATATAGTATATAGTTTTGTTCGTAGTCATGAAAAACGGAATGGAGATTTATTTGAGCGAGTTTCTTCGTTTATACACATTCTTATACTTTCTGATATGAATTCGATTCATGATGTTCAACATTTGAACTAATTGATATCATTTGGAAGAATTTAACATAGGACCTCACGCTGTGATGAATAACATATTGTTTTAGAAAATGAATCAAAAGCCTAAGGGGATGGTTAAGTAAGTATATTTGATGTACTCAAGGGGTGGTGCGGTAGTTGAAGGTTTGAGTTTTGAAGATGTGCTCCTCTCATGGTTTCAGGTTCAAGACTTGCTTGTGACATTAATTTTTAGATACCTCTTGTGTTTTAATTCCTTTGATGTGCGTGGTTACTCCCAGTGTTTTAAAAGGCGCGCCTAGGCTCAAGTCCCACCTTTTGCGCCTTAATTGTCCCAGGCCAGGCGCGTATAATAAGGCGCGCGCCTTATGGCGCCTTACGTGAAGCCCCAGGCGCCAAAAGGCGCGCGCCTCGTGGGCTTTTTAATTTTCCTTTGCGCTTTTTGTATTTCAGATCCCCGTACTAGGTCATTCGAAGCGCGTGAAGGTTGATAGTTGAATATTATGTATGTTTTTATATATTATTCTTGGTTAAAACTTCATTTATGTCCATGCAAAGTGTTTTTATTGTGTATACACACATATATATAAATTTTGTGTGTTTTTTTATATAGTGCGCCTTAAGTAAAAAAGCCCTCGCCTTTTGGTGCGCCTTGCGCCTCAGGCTCCAGAGGGCCATTGCGCCTTAGTGCGCCTTGCGCTTTTTAAAACACTGGTTACTCCAGGCCTGGTGTAGAGATGAGCGTGGTTACTCCGGGCATAGTGGAGCGAAGTTTCGATTTCTCGGTTTCCGAAAAAGAAGCTATTTGATTTGGTTAAATTACAAGTTTCGGTTGCCAAAATTTCAGTGTGTCTATTTTTTAATACGCCTTTAAATTGTAAGTGCCTAATAGGTATTTAAACTTTTAATACTGTGTGTAAGAGATTTTTGTACTTAAAAATTGTTTAATAGGTCTCTAAACTATTAACCTTGTGTTTAATAGGACGAAGTAATGGTCGAGCGGCTAGGCTTTAAGGGTGTGCTCCCCTTGAGGTCCTAGGTTCGGGGCAGCTGTGGTGATTAATTTCCCAGCCAACTGCAAATTTTCCCTCCGTTTTCTGCGTTGTCTCCCGGTGCTTGGCATAGGGACGGATGGATAGGGGAGTAAAGCTCCGGTTTCTTGGTTTAAAAAAAATGGTCCTTCAACTTTTCGAAGGGTCTCATATATCAGGAATTTCATGGAAAACATTAAAAGTTAGCTTACTGACCAATTTGTAATTTAACCTCAATCCTGTATACTTATCGTGGCTTTGGTTTGAATGATTATTTCCCTCCATTTGTGTATCTTACCTCAATTTCTACTTCTTTGTTGTGGTTTCCATTTCAGAATCTATGTTGCTCATTAAGCCTATTGGGTTTCAGCCAAAAAAATTAGGAGTTCGACTTCGAAACCCCACTTTTGTTGAGAATACCGCGTCATTGATTGTCAAAGCTGCATCCGAGATTAATGCTACAGGAGAAACTGATAGTAGTAAACCACAGCCCCCTGCAGAAGCTAAAAAAGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGACTGGAGCAGAAGGCAAGGATGAAGCTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGCCTCGTTCGTAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCGAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTGGCTCTTTCAATTCCTGCAGGTTTAGAGGTGACCCTACTTCTCCTCATTGCTTTCATTTTATTCTGTCTAATATTTTTTGTACTTTCATGAAAATGTACTTGTTTCTTTATATATCTGAAAGAATTCAGTGAGTAATGGAATGTGCAAATTGTGCGTAGATTTCAATGACTAATGGTGAGTTTAAAGATGATCTGTACATGAATACTTGATTTAGATTTGTATGAGTATATCCCCTTCTTAAAACATTCAACTCCCC

mRNA sequence

GATAAATAGAACTTATCCAAAGGAAGCTAAGGGTTCTCAGACCGGAGCAAACCATCAATGGCTTTTCTTCTCTGCTCCAATCCCCTTCCCACCTCTCTCCTTTCATCGCCATTTCCGCCGTCGCCGTCATGTTTTCCGACGATCTCCGCCGCCGCCACGAAATCTATGTTGCTCATTAAGCCTATTGGGTTTCAGCCAAAAAAATTAGGAGTTCGACTTCGAAACCCCACTTTTGTTGAGAATACCGCGTCATTGATTGTCAAAGCTGCATCCGAGATTAATGCTACAGGAGAAACTGATAGTAGTAAACCACAGCCCCCTGCAGAAGCTAAAAAAGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGACTGGAGCAGAAGGCAAGGATGAAGCTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGCCTCGTTCGTAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCGAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTGGCTCTTTCAATTCCTGCAGGTTTAGAGGTGACCCTACTTCTCCTCATTGCTTTCATTTTATTCTGTCTAATATTTTTTGTACTTTCATGAAAATGTACTTGTTTCTTTATATATCTGAAAGAATTCAGTGAGTAATGGAATGTGCAAATTGTGCGTAGATTTCAATGACTAATGGTGAGTTTAAAGATGATCTGTACATGAATACTTGATTTAGATTTGTATGAGTATATCCCCTTCTTAAAACATTCAACTCCCC

Coding sequence (CDS)

ATGGCTTTTCTTCTCTGCTCCAATCCCCTTCCCACCTCTCTCCTTTCATCGCCATTTCCGCCGTCGCCGTCATGTTTTCCGACGATCTCCGCCGCCGCCACGAAATCTATGTTGCTCATTAAGCCTATTGGGTTTCAGCCAAAAAAATTAGGAGTTCGACTTCGAAACCCCACTTTTGTTGAGAATACCGCGTCATTGATTGTCAAAGCTGCATCCGAGATTAATGCTACAGGAGAAACTGATAGTAGTAAACCACAGCCCCCTGCAGAAGCTAAAAAAGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGACTGGAGCAGAAGGCAAGGATGAAGCTAGCAAAAAAGATTAGGCTGCGAAGGAAGCGCCTCGTTCGTAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCGAAGATGAAGAAGTTGAAGAATGTTTGA

Protein sequence

MAFLLCSNPLPTSLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Homology

[Close]

BLAST of Sed0011991.1 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 217.6 bits (553), Expect = 7.3e-53
Identity = 130/158 (82.28%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLR 60
           MAFLLCSNPL TSL SSPF     PSPSCFPT SAA + S+LL++P+GFQPK   GVRLR
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPS-SILLMRPVGFQPKIFNGVRLR 60

Query: 61  NPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQKA 120
           N +FVENTASLIVKA SEI+ TGETDS++PQPPAEAKK DV VDKLPLESKLQERLEQK 
Sbjct: 61  NVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKT 120

Query: 121 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Sed0011991.1 vs. NCBI nr
Match: XP_022949869.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 214.2 bits (544), Expect = 8.1e-52
Identity = 130/160 (81.25%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 1   MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVR 60
           MAFLLCSNPL  SL SS F       PSPSCFP  + AA  SMLL+KP GFQPK   GVR
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPA-NFAALNSMLLMKPTGFQPKHFNGVR 60

Query: 61  LRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQ 120
           LRNP+FVENT S IVKAASEI+ATGETDS++P+PPAEAKK DVSVDKLPLESKLQERLEQ
Sbjct: 61  LRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQ 120

Query: 121 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of Sed0011991.1 vs. NCBI nr
Match: KAG7013851.1 (50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLR 60
           MAFLLCSNPL  SL SS F     PSPSCFP  + A   SMLL+KP GFQPK   GVRLR
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPA-NFATLNSMLLMKPTGFQPKHFNGVRLR 60

Query: 61  NPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQKA 120
           NP+FVENT S IVKAASEI+ATGETDS++P+P AEAKK DVSVDKLPLESKLQERLEQKA
Sbjct: 61  NPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESKLQERLEQKA 120

Query: 121 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Sed0011991.1 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.4 bits (529), Expect = 4.4e-50
Identity = 127/160 (79.38%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 1   MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVR 60
           MAFLLCSNPL  SL SS F       PSPSCFP ++ AA  SMLL+KP GFQPK   GVR
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFP-VNFAALNSMLLMKPTGFQPKHFNGVR 60

Query: 61  LRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQ 120
           LRNP+FVENT S  VKAASEI+ATGETDS++P+P AEAKK DV VDKLPLESKLQERLEQ
Sbjct: 61  LRNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQ 120

Query: 121 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of Sed0011991.1 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-49
Identity = 126/157 (80.25%), Postives = 134/157 (85.35%), Query Frame = 0


Query: 2   AFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRN 61
           +FLLCSNPL TSL S PF     PSPSCFP  SAA +  MLL+KPIGFQPK   GVRL  
Sbjct: 3   SFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPS-PMLLMKPIGFQPKHFNGVRLGK 62

Query: 62  PTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQKAR 121
           P+FVEN ASLIVKAASEI+A G+TDSS+ QPPAEAKK DV VDKLPLESKLQERLEQKAR
Sbjct: 63  PSFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKAR 122

Query: 122 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           MKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]

BLAST of Sed0011991.1 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-15
Identity = 68/146 (46.58%), Postives = 85/146 (58.22%), Query Frame = 0


Query: 15  LSSPFPPSPSCFPTISAAATKSMLLIK----PIGFQPKKLGVRL--RNPTFVENTASLI- 74
           L SP     S  P  S A + S   IK     +   P   G RL    P   +   +++ 
Sbjct: 3   LLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLP-SFGQRLVAHGPVIAQKRGTVVA 62

Query: 75  -VKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKLQERLEQKARMKLAKKIRLRR 134
            V AA+E  A  + D SK +     + ++SV  LPLESKLQ +LEQK +MK+AKKIRLRR
Sbjct: 63  MVSAAAEETAGEDGDQSKVE-----EANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRR 122

Query: 135 KRLVRKRHLRKKGRWPPSKMKKLKNV 153
            RL+RKR LRK+G WPPSKMKKLKNV
Sbjct: 123 NRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Sed0011991.1 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 4   LLCSNPLPTSLL--SSPFPPSPSCFPT------ISAAATKSMLLIKPIGFQPKKLGVRLR 63
           LLC N   T+ +  SS   P P+  P       +     K   ++ PI  +P+K      
Sbjct: 3   LLCFNSFTTTPVTSSSSLFPHPTANPISRVRIGLPTNCLKGFRILTPIVQKPRK------ 62

Query: 64  NPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKLQERLEQKAR 123
           N  F+ + A     A ++ N     + S+ +  ++    VSVDKLPLESKL+ER E+  +
Sbjct: 63  NSIFIASAA-----AGADSNVADGVEESESKKESDV---VSVDKLPLESKLKEREERMLK 122

Query: 124 MKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           MKLAKKIRL+RKRLV+KR LRKKG WPPSKMKKL+ V
Sbjct: 123 MKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145

[Close]

BLAST of Sed0011991.1 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-13
Identity = 73/153 (47.71%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 4   LLCSNPLPT-SLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVEN 63
           LLC N LP+ S LSS    S S     S +    +L +KP   + K   V L   +   +
Sbjct: 3   LLCFNSLPSLSSLSS----SSSSRLLQSPSFASPVLSLKPNAVESKN-RVSLSAYSLNSS 62

Query: 64  TASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKLQER---LEQKARMKLA 123
              ++VKAA+     G    SK +P       V VDKLPLESK  +    LE + +MKLA
Sbjct: 63  HGRIVVKAAAS-GVDGAEPESKEEPKTVVAA-VPVDKLPLESKEAKEKLLLELRLKMKLA 122

Query: 124 KKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           KKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Sbjct: 123 KKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of Sed0011991.1 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.5e-53
Identity = 130/158 (82.28%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MAFLLCSNPLPTSLLSSPF----PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLR 60
           MAFLLCSNPL TSL SSPF     PSPSCFPT SAA + S+LL++P+GFQPK   GVRLR
Sbjct: 1   MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPS-SILLMRPVGFQPKIFNGVRLR 60

Query: 61  NPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQKA 120
           N +FVENTASLIVKA SEI+ TGETDS++PQPPAEAKK DV VDKLPLESKLQERLEQK 
Sbjct: 61  NVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKT 120

Query: 121 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Sed0011991.1 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.9e-52
Identity = 130/160 (81.25%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 1   MAFLLCSNPLPTSLLSSPF------PPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVR 60
           MAFLLCSNPL  SL SS F       PSPSCFP  + AA  SMLL+KP GFQPK   GVR
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPA-NFAALNSMLLMKPTGFQPKHFNGVR 60

Query: 61  LRNPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQ 120
           LRNP+FVENT S IVKAASEI+ATGETDS++P+PPAEAKK DVSVDKLPLESKLQERLEQ
Sbjct: 61  LRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQ 120

Query: 121 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of Sed0011991.1 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 9.0e-49
Identity = 126/158 (79.75%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MAFLLCSNPLPTSLLS---SPFP-PSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLR 60
           MAFLLCSNPL  SL S   SP P PSPSCFP  + +A  SM L+KP GFQPK   GVRLR
Sbjct: 1   MAFLLCSNPLSISLHSSTLSPSPSPSPSCFPG-NFSALNSMSLMKPTGFQPKHFNGVRLR 60

Query: 61  NPTFVENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQKA 120
           NP+FVENT S IVKAASEI+ TGETDS++P+P AEAKK DV VDKLPLESKLQERLEQKA
Sbjct: 61  NPSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKA 120

Query: 121 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Sed0011991.1 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 123/153 (80.39%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 2   AFLLCSNPLPTSLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTFV 61
           +FLL SNPL TS   S   PSPSCFP  SA  + SMLL+KPIGFQPK   GVRLRN +FV
Sbjct: 3   SFLLSSNPLSTSFHFST-SPSPSCFPPTSAIPS-SMLLMKPIGFQPKHFNGVRLRNHSFV 62

Query: 62  ENTASLIVKAASEINATGETDSSKPQPPAEAKK-DVSVDKLPLESKLQERLEQKARMKLA 121
           ENTASL+VKAASE +ATGETDSS  QP AEAKK DV VDKLPLESKLQERLEQKARMKLA
Sbjct: 63  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 122

Query: 122 KKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           KKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 123 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of Sed0011991.1 vs. ExPASy TrEMBL
Match: A0A6J1EBJ3 (50S ribosomal protein 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111432511 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.4e-46
Identity = 120/153 (78.43%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 1   MAFLLCSNPLPTSLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKL-GVRLRNPTF 60
           MAFLL SNP+ TSL SS FPPSPSCFP +++AA  SMLL+KP  FQPK   G  LRNP+F
Sbjct: 10  MAFLLFSNPVSTSLHSSLFPPSPSCFP-MTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSF 69

Query: 61  VENTASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKLQERLEQKARMKLA 120
           VEN +SLIVKAASEI+AT ETDSS+PQPPA     V VDKLPLESKLQER EQKARMKLA
Sbjct: 70  VENRSSLIVKAASEIDATVETDSSEPQPPA-----VPVDKLPLESKLQEREEQKARMKLA 129

Query: 121 KKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           KKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 130 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 156

[Close]

BLAST of Sed0011991.1 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 73/153 (47.71%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 4   LLCSNPLPT-SLLSSPFPPSPSCFPTISAAATKSMLLIKPIGFQPKKLGVRLRNPTFVEN 63
           LLC N LP+ S LSS    S S     S +    +L +KP   + K   V L   +   +
Sbjct: 3   LLCFNSLPSLSSLSS----SSSSRLLQSPSFASPVLSLKPNAVESKN-RVSLSAYSLNSS 62

Query: 64  TASLIVKAASEINATGETDSSKPQPPAEAKKDVSVDKLPLESKLQER---LEQKARMKLA 123
              ++VKAA+     G    SK +P       V VDKLPLESK  +    LE + +MKLA
Sbjct: 63  HGRIVVKAAAS-GVDGAEPESKEEPKTVVAA-VPVDKLPLESKEAKEKLLLELRLKMKLA 122

Query: 124 KKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 153
           KKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Sbjct: 123 KKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:

BLAST of Sed0011991.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154476.1	7.3e-53	82.28	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
XP_022949869.1	8.1e-52	81.25	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]	[more]
KAG7013851.1	2.0e-50	81.01	50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_023543496.1	4.4e-50	79.38	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038881132.1	3.7e-49	80.25	50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r...	[more]

BLAST of Sed0011991.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27684	8.2e-15	46.58	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
P11891	1.8e-14	42.68	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]
Q9LER7	2.0e-13	47.71	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]

BLAST of Sed0011991.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNT9	3.5e-53	82.28	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GE62	3.9e-52	81.25	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HS41	9.0e-49	79.75	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A0A0L3F4	1.1e-46	80.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A6J1EBJ3	2.4e-46	78.43	50S ribosomal protein 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Sed0011991.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	1.4e-14	47.71	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..152
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 1..152
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 1..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0011991	Sed0011991	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011991.1-exon	Sed0011991.1-exon-LG03:15396340..15396960	exon
Sed0011991.1-exon	Sed0011991.1-exon-LG03:15398800..15398959	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011991.1-three_prime_utr	Sed0011991.1-three_prime_utr-LG03:15396340..15396604	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011991.1-cds	Sed0011991.1-cds-LG03:15396605..15396960	CDS
Sed0011991.1-cds	Sed0011991.1-cds-LG03:15398800..15398902	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011991.1-five_prime_utr	Sed0011991.1-five_prime_utr-LG03:15398903..15398959	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0011991.1	Sed0011991.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome