Sed0011525.4 (mRNA) Chayote v1

Overview


Name	Sed0011525.4
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	LG05: 7695072 .. 7698163 (+)
Sequence length	850
RNA-Seq Expression	Sed0011525.4
Synteny	Sed0011525.4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTACCCATATTTCCAAAATACATTGCCGAAATTACCCCACTATTCTATAAACCCCATCAGACTGGAAGCTAGGGTTCTAGCGTTAACCCTCTGCAGCCAAGAACCAAGACGACGAGTTCATCTTCTTCATTGTCTGAACTAATCTAAAACCAACATTCAGAAATCCATCATTTCTTCCGATCAGCAATGGCCTCAATTGGCGCTAGATCTTTGTTCCGTTCAGTTTCCGGTTCTGCCCGCCGTGCTGCCGCTCAGATCGGATCTCAAGCCCGGCCGTCGTCAAGCTCTCCCTTTCGAATGGCGGCTAACAAGCCCCTCGCTAATCGATCTTTCAGGTTCCTTGCTTAATGCTTTTGCGTCCATTACATGGTTTCTGATCAAATTTTCAATTTATGTGGTTGTGTATTTGGCTTATCAAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGTTGATGCCCTTCCATTCTGCGTCGGCGTCGGCTTTGATGACTTCAATGCTCTCGATTTCAGGTCGCACCTGTGGTTGGCTTCCCGAAGGTGCGCTTACTTATAATTTACTTCTCAAGATAAATTCAGTTTGAAATTTAGAGGCTATTCATAATTTCAGAATTTAGATCCCTTTGATAATGACATAATGTACTGGAAATTGATTTTCTATTTGCATTAGTTCTCTGCTGGATTAATTTCTGCTTTACAATTATTCTCATGAATCAAGAAAGAGAGTTATAGTTTCATAGTTTGAGTGGGGTTAATGATAATTTTTATTTTTTTTGAAATTGGTCAATTTGAGCTTGCTCCCCTATACCCGGAGAAACCATGTTCGTCCCTAGGCCATATACTTGAAATTTAGGGTTTTCTGAGAAATTAATCTCCACCGCCACCTCAAGTTTCGGACCTCAAGGGGAGCACACCTCCAAAGCCTAGGCGCTCGACCATTGTGCTGCCGGCCAGCCCCTAGGGGACATAAGGATAAATTATATTTAAGAATAGTGATAATGATATTGATTTGCAATTCCCCCATATCAACATGATGTTTCTGGAGGAAGAAAGATCCATGGTAGTGTCTATGAACCATTAGGAGATGCAACATGAAACTATATCTTTTGGATCGAATTTAGTATTGATATGGGTTCACATGATGCCAAGTAACTTGTAATTGTTCATGAGACTTTCCTGTGTATATAAAGTTAGATGGGTTAACGCAAGTTTTATGACATCTCTTCATCATCACTTTCTCTTATTATAGACTACTTCTGGTTGCTCCACTTCATATAAAACTTGTTAACATAGAGATTCCTGATCCAATTCCATAATTTTCTTAATGTTATGTTTTGAAAGGAGAAGTAAATCTACTTATAGGCTGTCTAACTAGTGGATTTTTTACTCTTGGATTAGGTAGCTAGCACACTTTATAGGATCATTGATGTTCTTGCCTTCTTGTTCCTCTGGTGAGTTGGTTCCCATAAAATTGTTCAGGACTGATAGAATTGAACAGAATTATCTAATATCATGCATGCAAACAACTTCATTTTTTCTCCTAGTACAAGTTTATTACATCAAGTAGCTTAGCTAATGATCAAATTAGAACAAAAACAAGCTCTTAACAGACAATGATGTTCTATTCTATTTTCTTCACCTCCCATGTCCCATAATTGAATCAGAGTTGAAGTCGTTTTGCTGAACTCGGGTGTTATACAACTTCTCTTCGATATTTTTTGTTCTTAGTCTTACTAAAATGAGTCTTTTATTAGAAAACCTTCCGTTCCTTATTCAAATTATTAATTAAAGAAGTACATTCCCCTGTTTCTCATGTAGGCAAAGACAAGACTAGATGAGGATGGAGAAGCAGGAAGGAATGACTTGAGTTGTTTTTTGAGTTTCGCCCTTTTGTCCTAGTTGACGCTATCCCTGCCCCGACCCCATAAAAAAAAAAAAAACTTGTAGGCGATGATATCATCAATAGGTTAGATGAGATGATTGTTTTTGGAGTGAAATAAAACATATGATATTCTGTTCAGTTCACCGTGTTTGTAGATTGTTGTCTTTTGAAGTGTTAAAGGATTATGGATTCAATTTAATTCCACAACTATATTGGGTTACAGATTACTAGATCTTTGCAGAATAGCTTTTATTCTAAATAGCTTGCTGTTTGCTGTTTTGCAAAGTTTACTTTATATATCAAATATTTGTTACTATCAATTACTTCTTAAAGATGGGGATTGCAAATTCAGCAATATATTACTCTAATCATCAAGTACCATGAAAAGGAGTTTGAAGTAAGCTAAACTGTGAAACCGTTGTTTAGTTAAAATGGGTTTTCCTATTTACCAGTTTTGAGCTCTTGAAGTCAAGAAATGTTTAGTTAAAATGGGTTTTCCTATTTACCAGTTTTGAGCTCTTAAAGTCAAGAAATAGTTGTTAATAAGGTCATCAAACATAAGGAGCTTGCACTTTTAGATAACACTCATCTATTGTTCTTTTTTCCAATCCAATTTAAGGATGAGCTATGAAAAATTTGTCTTTAACTTTTATGAATGATACTTTGGAATATATTTGAAAAAGTTGCTTCTAACTGGCATGGTTATTGTAGTTTTCCTGACCCAATACTTGATCCAAGCCCCTTATAAGTTTAGACTTGGAAAATGTGTTTGATGAGCATGTTGATCACACCTCCCAAATTGTTTCTTGATTTGATTGGAAGATCAAACTGACATGAATAGTACACTAATCACCTGTGTTCATCAGCAGACAAGGATGATCTATGATAAATGACAAAAGGATCTGAGGAAGTTCTCTATCCAACACTCCATACAAACAGTGATTTCTATTAACTAGAAGCTTCCAAGATTCAATTGGTGGTTTGTGAAGAAGAGATTCCAAGCAATGGCAATGGTTGATTGTTATTCGAAGACTGGTCTAAATTTGTAGTACTCCATATGTTCATCACAGACTTGATGCTCTTTGTAGATTGATTGTTAACATTTTTATCAGTTCATGTCAATTTATTTCATAAAATATTCATAGAAATGTGTGCGATAGTGATGCATGGTCCTATCTTGACTAAGAAATCAAAGTGAAAAATTTC

mRNA sequence

AAAGTACCCATATTTCCAAAATACATTGCCGAAATTACCCCACTATTCTATAAACCCCATCAGACTGGAAGCTAGGGTTCTAGCGTTAACCCTCTGCAGCCAAGAACCAAGACGACGAGTTCATCTTCTTCATTGTCTGAACTAATCTAAAACCAACATTCAGAAATCCATCATTTCTTCCGATCAGCAATGGCCTCAATTGGCGCTAGATCTTTGTTCCGTTCAGTTTCCGGTTCTGCCCGCCGTGCTGCCGCTCAGATCGGATCTCAAGCCCGGCCGTCGTCAAGCTCTCCCTTTCGAATGGCGGCTAACAAGCCCCTCGCTAATCGATCTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGTTGATGCCCTTCCATTCTGCGTCGGCGTCGGCTTTGATGACTTCAATGCTCTCGATTTCAGGTCGCACCTGTGGTTGGCTTCCCGAAGGTAGCTAGCACACTTTATAGGATCATTGATGTTCTTGCCTTCTTGTTCCTCTGACAAGGATGATCTATGATAAATGACAAAAGGATCTGAGGAAGTTCTCTATCCAACACTCCATACAAACAGTGATTTCTATTAACTAGAAGCTTCCAAGATTCAATTGGTGGTTTGTGAAGAAGAGATTCCAAGCAATGGCAATGGTTGATTGTTATTCGAAGACTGGTCTAAATTTGTAGTACTCCATATGTTCATCACAGACTTGATGCTCTTTGTAGATTGATTGTTAACATTTTTATCAGTTCATGTCAATTTATTTCATAAAATATTCATAGAAATGTGTGCGATAGTGATGCATGGTCCTATCTTGACTAAGAAATCAAAGTGAAAAATTTC

Coding sequence (CDS)

ATGGCCTCAATTGGCGCTAGATCTTTGTTCCGTTCAGTTTCCGGTTCTGCCCGCCGTGCTGCCGCTCAGATCGGATCTCAAGCCCGGCCGTCGTCAAGCTCTCCCTTTCGAATGGCGGCTAACAAGCCCCTCGCTAATCGATCTTTCAGGTGTGCGGCTGAGATGAGCTTCTGTTTGGAGTCGTTGATGCCCTTCCATTCTGCGTCGGCGTCGGCTTTGATGACTTCAATGCTCTCGATTTCAGGTCGCACCTGTGGTTGGCTTCCCGAAGGTAGCTAG

Protein sequence

MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLESLMPFHSASASALMTSMLSISGRTCGWLPEGS

Homology

[Close]

BLAST of Sed0011525.4 vs. NCBI nr
Match: KAG7026975.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 4.7e-31
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS+SGSARRAAA IGSQAR SS SPFRMA NKPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEGS 93
          S+MPFHSAS++ALM SMLSIS R+CGWLPEG+
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGA 92

[Close]

BLAST of Sed0011525.4 vs. NCBI nr
Match: XP_023534316.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 4.7e-31
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS+SGSARRAAA IGSQAR SS SPFRMA NKPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEG 92
          S+MPFHSAS++ALM SMLSIS R+CGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Sed0011525.4 vs. NCBI nr
Match: XP_022947067.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 4.7e-31
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS+SGSARRAAA IGSQAR SS SPFRMA NKPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEG 92
          S+MPFHSAS++ALM SMLSIS R+CGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Sed0011525.4 vs. NCBI nr
Match: XP_022947068.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata] >XP_023534318.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 4.7e-31
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS+SGSARRAAA IGSQAR SS SPFRMA NKPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEG 92
          S+MPFHSAS++ALM SMLSIS R+CGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Sed0011525.4 vs. NCBI nr
Match: XP_023512422.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo] >XP_023512423.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 4.7e-31
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS SGSARRAAAQIGSQA+ SSS+PFRMA  KPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRNFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEGS 93
          S+MPFHSAS+SALMTSMLS+S  +CGWLPEGS
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGS 92

[Close]

BLAST of Sed0011525.4 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.3e-11
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 5  GARSLFRSVSGSARRAAAQIGSQARPSSSSP--FRMAANKPLANRSFRCAAEMSFCLESL 64
          GARS+ R  + S+R AAA  G  A  + S+P  FR  A +       R   E+SFC+ESL
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASASALMTSMLSISGRTCGWLPE 91
          +P+HSA+ASALMTS LSISG+T GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Sed0011525.4 vs. ExPASy TrEMBL
Match: A0A6J1G5E8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS+SGSARRAAA IGSQAR SS SPFRMA NKPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEG 92
          S+MPFHSAS++ALM SMLSIS R+CGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Sed0011525.4 vs. ExPASy TrEMBL
Match: A0A6J1G5L1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 76/91 (83.52%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS+SGSARRAAA IGSQAR SS SPFRMA NKPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEG 92
          S+MPFHSAS++ALM SMLSIS R+CGWLPEG
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Sed0011525.4 vs. ExPASy TrEMBL
Match: A0A6J1JFZ5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS SGSARRAAAQIGSQA+ SSS+PFRMA  KPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEGS 93
          S+MPFHSAS+SALMTSMLS+S  +CGWLPEGS
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGS 92

[Close]

BLAST of Sed0011525.4 vs. ExPASy TrEMBL
Match: A0A6J1FX39 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS SGSARRAAAQIGSQA+ SSS+PFRMA  KPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEGS 93
          S+MPFHSAS+SALMTSMLS+S   CGWLPEGS
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGS 92

[Close]

BLAST of Sed0011525.4 vs. ExPASy TrEMBL
Match: A0A6J1I155 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.7e-31
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MASIGARSLFRSVSGSARRAAAQIGSQARPSSSSPFRMAANKPLANRSFRCAAEMSFCLE 60
          MASIGARS+FRS SGSARRAAA IGSQAR SS SPFRMA NKPL++R+FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SLMPFHSASASALMTSMLSISGRTCGWLPEG 92
          S+MPFHSAS++A+M SMLSIS R+CGWLPEG
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEG 91

[Close]

BLAST of Sed0011525.4 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-13
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 5  GARSLFRSVSGSARRAAAQIGSQARPSSSSP--FRMAANKPLANRSFRCAAEMSFCLESL 64
          GARS+ R  + S+R AAA  G  A  + S+P  FR  A +       R   E+SFC+ESL
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASASALMTSMLSISGRTCGWLPEG 92
          +P+HSA+ASALMTS LSISG+T GWL +G
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSDG 95

[Close]

BLAST of Sed0011525.4 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-12
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 5  GARSLFRSVSGSARRAAAQIGSQARPSSSSP--FRMAANKPLANRSFRCAAEMSFCLESL 64
          GARS+ R  + S+R AAA  G  A  + S+P  FR  A +       R   E+SFC+ESL
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASASALMTSMLSISGRTCGWLPE 91
          +P+HSA+ASALMTS LSISG+T GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Sed0011525.4 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-12
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 5  GARSLFRSVSGSARRAAAQIGSQARPSSSSP--FRMAANKPLANRSFRCAAEMSFCLESL 64
          GARS+ R  + S+R AAA  G  A  + S+P  FR  A +       R   E+SFC+ESL
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASASALMTSMLSISGRTCGWLPE 91
          +P+HSA+ASALMTS LSISG+T GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Sed0011525.4 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 6  ARSLFRSVSGSARRAAAQIGSQARPSSSS---PFRMAANKPLANRSFRCAAEMSFCLESL 65
          ARS+FRS +  A   A +  +  +P  SS    FRM    PL NR FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASASALMTSMLSISGRTCGWLPEG 92
          +P+H+A+ASAL+ SMLS+S R  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

[Close]

BLAST of Sed0011525.4 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 6  ARSLFRSVSGSARRAAAQIGSQARPSSSS---PFRMAANKPLANRSFRCAAEMSFCLESL 65
          ARS+FRS +  A   A +  +  +P  SS    FRM    PL NR FR   E+S C+E++
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASASALMTSMLSISGRTCGWLPEG 92
          +P+H+A+ASAL+ SMLS+S R  GW+ +G
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDG 90

The following BLAST results are available for this feature:

BLAST of Sed0011525.4 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026975.1	4.7e-31	82.61	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita argyr...	[more]
XP_023534316.1	4.7e-31	83.52	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022947067.1	4.7e-31	83.52	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022947068.1	4.7e-31	83.52	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
XP_023512422.1	4.7e-31	82.61	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]

BLAST of Sed0011525.4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	4.3e-11	51.14	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Sed0011525.4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5E8	2.3e-31	83.52	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1G5L1	2.3e-31	83.52	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1JFZ5	3.9e-31	82.61	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
A0A6J1FX39	3.9e-31	82.61	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
A0A6J1I155	8.7e-31	82.42	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]

BLAST of Sed0011525.4 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20585.3	6.2e-13	51.69	nuclear fusion defective 6	[more]
AT2G20585.1	3.1e-12	51.14	nuclear fusion defective 6	[more]
AT2G20585.2	3.1e-12	51.14	nuclear fusion defective 6	[more]
AT1G28395.2	1.5e-11	44.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	1.5e-11	44.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..91
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0011525	Sed0011525	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011525.4-five_prime_utr	Sed0011525.4-five_prime_utr-LG05:7695072..7695260	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011525.4-exon	Sed0011525.4-exon-LG05:7695072..7695409	exon
Sed0011525.4-exon	Sed0011525.4-exon-LG05:7695494..7695615	exon
Sed0011525.4-exon	Sed0011525.4-exon-LG05:7696474..7696526	exon
Sed0011525.4-exon	Sed0011525.4-exon-LG05:7697827..7698163	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011525.4-cds	Sed0011525.4-cds-LG05:7695261..7695409	CDS
Sed0011525.4-cds	Sed0011525.4-cds-LG05:7695494..7695615	CDS
Sed0011525.4-cds	Sed0011525.4-cds-LG05:7696474..7696481	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011525.4-three_prime_utr	Sed0011525.4-three_prime_utr-LG05:7696482..7696526	three_prime_UTR
Sed0011525.4-three_prime_utr	Sed0011525.4-three_prime_utr-LG05:7697827..7698163	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0011525.4	Sed0011525.4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy