Sed0011360.1 (mRNA) Chayote v1

Overview


Name	Sed0011360.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	U4/U6 small nuclear ribonucleoprotein Prp31 homolog
Location	LG09: 36316120 .. 36317435 (-)
Sequence length	1164
RNA-Seq Expression	Sed0011360.1
Synteny	Sed0011360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATCAAACACGGAAATTCTTTTCTAGCATATCTTGATGAACTTGAAGAAGATGTTGATGTTCAAAATATGGAAGTGGATATTGATGAAAGCCTTAATTATGATGATCTAGACAGTGTAACAAAATTGCACAAGACACAAAGATACATTGATACAATGCAGAAAGTGAAGGATTGTAACTTCTCAAATCAAGGATTAGTATTGGAAGATGATCACGAGTACCAATTGATAGCGGAGTGTAACACTTTGTTAGTGGATATCGAAGACGAAATTATTATTATTCACAATCTTATACGTGATAGATATCGATTGAAGTTTCCCGAGCTTGAATCACTCGTGCACCACTCGGTCGATTATGCTCGAGTTGTTAAGAAGATTGGGAATGAAATAGATTTGAGTCTTGTAGATTTGGAAGGGCTTTTACCGTTAGCTGTTCTTATGGTTATTTCAGTTACACCATCTACCACAAGTGGATGCATGTGATCGAGTTCTTGCTTTAGATTCAGCAAAGAAAATGGTCCTTAATTTTGTTGAACATAGAATGGGATATATTACACCAAATCTTTCGGCCGTAGTCGCCAGTGCGGTTGCAGCAAAACTAATGGGAGCTGCGGGCGGTCTTGCCGCTTTAGCTATGACGCCTGCTTGCAACGTTCAACTTCTTGGTGCGAAGAACAAAAATTTTGTTGGATTTTCCACAGCAACCTCACAATTTCGGGTAGGTTATATCGAGCAAACAGAGATATTCCAATCAACACCTCCTCCTTTGAAGATGCGAGTTTGTTGACTCGTAGCTGCAAAATCAACACTTGCATCACGAGTTGACTCCACTCGAAGGGATCCTACTGGAATAACTGGACGAGTCTTCAAAGATGAGATCGTTAAGAAAAGTGAGAAGTGGCAAGAACCTCCACCAACAAAACAACCGAAATCTCTCCCGGTCCCTGATTCTAAACCGCAAAAGAAGAGATGTGGTCGTCGACAAAGGAAGGTGAAGGAAAGATATGCAACCACGGAGATGAGGAAGCTGGCAAACCGGATGCAGTTTGGGGTGCCCCAAGAAAGTTCTTTAGGAGATGGATTTGGGGAAGAGTATGGAATGCTTGGTCAAGCTGGGAGTGGCAAAGCTTAATAAGAAGTTCAAGAAAAAATGTTATGGAAGCAGTGTAGCTACATTTGGGCTGATGTCCAGTTTAGCATTTACATCGGTACAAGGTATCGAGCTGTCGAATCCTCGAGCTCATTTGAACCAGCTAGGTCTTGGAACTCAAAGCACCTACTTTTCTGAAACAGAAACATTTTCAAAGATCTGA

mRNA sequence

ATGGTTATCAAACACGGAAATTCTTTTCTAGCATATCTTGATGAACTTGAAGAAGATGTTGATGTTCAAAATATGGAAGTGGATATTGATGAAAGCCTTAATTATGATGATCTAGACAGTGTAACAAAATTGCACAAGACACAAAGATACATTGATACAATGCAGAAAGTGAAGGATTGTAACTTCTCAAATCAAGGATTAGTATTGGAAGATGATCACGAGTACCAATTGATAGCGGAGTGTAACACTTTGTTAGTGGATATCGAAGACGAAATTATTATTATTCACAATCTTATACGTGATAGATATCGATTGAAGTTTCCCGAGCTTGAATCACTCGTGCACCACTCGGTCGATTATGCTCGAGTTGTTAAGAAGATTGGGAATGAAATAGATTTGAGTCTTGTAGATTTGGAAGGGCTTTTACCGTTAGCTGTTCTTATGGTTATTTCAGTTACACCATCTACCACAAATTCAGCAAAGAAAATGGTCCTTAATTTTGTTGAACATAGAATGGGATATATTACACCAAATCTTTCGGCCGTAGTCGCCAGTGCGGTTGCAGCAAAACTAATGGGAGCTGCGGGCGGTCTTGCCGCTTTAGCTATGACGCCTGCTTGCAACGTTCAACTTCTTGGTGCGAAGAACAAAAATTTTGTTGGATTTTCCACAGCAACCTCACAATTTCGGGTAGGTTATATCGAGCAAACAGAGATATTCCAATCAACACCTCCTCCTTTGAAGATGCGAGTTTTTGACTCCACTCGAAGGGATCCTACTGGAATAACTGGACGAGTCTTCAAAGATGAGATCGTTAAGAAAAGTGAGAAGTGGCAAGAACCTCCACCAACAAAACAACCGAAATCTCTCCCGGTCCCTGATTCTAAACCGCAAAAGAAGAGATGTGGTCGTCGACAAAGGAAGGTGAAGGAAAGATATGCAACCACGGAGATGAGGAAGCTGGCAAACCGGATGCAGTTTGGGGTGCCCCAAGAAAGTTCTTTAGGAGATGGATTTGGGGAAGAGTATGGAATGCTTGGTCAAAAAAAATGTTATGGAAGCAGTGTAGCTACATTTGGGCTGATGTCCACTCATTTGAACCAGCTAGGTCTTGGAACTCAAAGCACCTACTTTTCTGAAACAGAAACATTTTCAAAGATCTGA

Coding sequence (CDS)

ATGGTTATCAAACACGGAAATTCTTTTCTAGCATATCTTGATGAACTTGAAGAAGATGTTGATGTTCAAAATATGGAAGTGGATATTGATGAAAGCCTTAATTATGATGATCTAGACAGTGTAACAAAATTGCACAAGACACAAAGATACATTGATACAATGCAGAAAGTGAAGGATTGTAACTTCTCAAATCAAGGATTAGTATTGGAAGATGATCACGAGTACCAATTGATAGCGGAGTGTAACACTTTGTTAGTGGATATCGAAGACGAAATTATTATTATTCACAATCTTATACGTGATAGATATCGATTGAAGTTTCCCGAGCTTGAATCACTCGTGCACCACTCGGTCGATTATGCTCGAGTTGTTAAGAAGATTGGGAATGAAATAGATTTGAGTCTTGTAGATTTGGAAGGGCTTTTACCGTTAGCTGTTCTTATGGTTATTTCAGTTACACCATCTACCACAAATTCAGCAAAGAAAATGGTCCTTAATTTTGTTGAACATAGAATGGGATATATTACACCAAATCTTTCGGCCGTAGTCGCCAGTGCGGTTGCAGCAAAACTAATGGGAGCTGCGGGCGGTCTTGCCGCTTTAGCTATGACGCCTGCTTGCAACGTTCAACTTCTTGGTGCGAAGAACAAAAATTTTGTTGGATTTTCCACAGCAACCTCACAATTTCGGGTAGGTTATATCGAGCAAACAGAGATATTCCAATCAACACCTCCTCCTTTGAAGATGCGAGTTTTTGACTCCACTCGAAGGGATCCTACTGGAATAACTGGACGAGTCTTCAAAGATGAGATCGTTAAGAAAAGTGAGAAGTGGCAAGAACCTCCACCAACAAAACAACCGAAATCTCTCCCGGTCCCTGATTCTAAACCGCAAAAGAAGAGATGTGGTCGTCGACAAAGGAAGGTGAAGGAAAGATATGCAACCACGGAGATGAGGAAGCTGGCAAACCGGATGCAGTTTGGGGTGCCCCAAGAAAGTTCTTTAGGAGATGGATTTGGGGAAGAGTATGGAATGCTTGGTCAAAAAAAATGTTATGGAAGCAGTGTAGCTACATTTGGGCTGATGTCCACTCATTTGAACCAGCTAGGTCTTGGAACTCAAAGCACCTACTTTTCTGAAACAGAAACATTTTCAAAGATCTGA

Protein sequence

MVIKHGNSFLAYLDELEEDVDVQNMEVDIDESLNYDDLDSVTKLHKTQRYIDTMQKVKDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTTNSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMTPACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRVFDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKERYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQKKCYGSSVATFGLMSTHLNQLGLGTQSTYFSETETFSKI

Homology

[Close]

BLAST of Sed0011360.1 vs. NCBI nr
Match: XP_022151138.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 535.8 bits (1379), Expect = 3.1e-148
Identity = 319/476 (67.02%), Postives = 339/476 (71.22%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EEDVD +NME DID      ESLNYDDLDSV+KL KTQRY D
Sbjct: 6   DSFLADLDELSDEDNFLDEEDVDAENMEEDIDGDLADLESLNYDDLDSVSKLQKTQRYND 65

Query: 67  TMQKV-----KDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV     KD N SNQGLVLEDD EYQLI ECN+L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVEGALQKDSNISNQGLVLEDDPEYQLIVECNSLSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKK VLNFVE RMGYI PNLSA+V SAVAAKLMG AGGLAALA  
Sbjct: 186 QKTIDACDRALALDSAKKKVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLAALAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFRVGYIEQTEIFQSTPPPLKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLIAAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. NCBI nr
Match: XP_022945419.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog [Cucurbita moschata] >XP_022945420.1 U4/U6 small nuclear ribonucleoprotein Prp31 homolog [Cucurbita moschata] >KAG6573747.1 U4/U6 small nuclear ribonucleoprotein Prp31-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 531.9 bits (1369), Expect = 4.4e-147
Identity = 316/476 (66.39%), Postives = 338/476 (71.01%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EEDVD +NME DID      ESLNYDDLD+V+KL K+QRY D
Sbjct: 6   DSFLADLDELSDEDNFPDEEDVDAENMEEDIDGDLADLESLNYDDLDNVSKLQKSQRYSD 65

Query: 67  TMQKV-----KDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV     KD N SNQGLVLEDD EYQLI ECN L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVEDALQKDSNISNQGLVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKKMVLNFVE RMGYI PNLSA+V SAVAAKLMG AGGL +LA  
Sbjct: 186 QKTIDACDRALALDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLGSLAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFRVGYIEQTEIFQSTPPPLKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLVSAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. NCBI nr
Match: KAG7032269.1 (U4/U6 small nuclear ribonucleoprotein Prp31-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 530.0 bits (1364), Expect = 1.7e-146
Identity = 316/476 (66.39%), Postives = 335/476 (70.38%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EED D +NME DID      ESLNYDDLDSV+KL KTQRY D
Sbjct: 68  DSFLADLDELSDEDNFLDEEDADAENMEEDIDGDLADLESLNYDDLDSVSKLQKTQRYND 127

Query: 67  TMQKVKDC-----NFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV D      N SNQG VLEDD EYQLI ECN L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 128 IMQKVADALEMDSNVSNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKF 187

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 188 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 247

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKKMVLNFVE RMGYI PNLSA+V SAVAAKLMG AGGL ALA  
Sbjct: 248 QKTIDACDRALTLDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLVALAKM 307

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFRVGYIEQTEIFQSTPPPLKMR              
Sbjct: 308 PACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLIAAKSTLAAR 367

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 368 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 427

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 428 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 487

[Close]

BLAST of Sed0011360.1 vs. NCBI nr
Match: XP_022956658.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Cucurbita moschata] >XP_023004221.1 U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Cucurbita maxima] >XP_023526610.1 U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Cucurbita pepo subsp. pepo] >KAG6601489.1 U4/U6 small nuclear ribonucleoprotein Prp31-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 530.0 bits (1364), Expect = 1.7e-146
Identity = 316/476 (66.39%), Postives = 335/476 (70.38%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EED D +NME DID      ESLNYDDLDSV+KL KTQRY D
Sbjct: 6   DSFLADLDELSDEDNFLDEEDADAENMEEDIDGDLADLESLNYDDLDSVSKLQKTQRYND 65

Query: 67  TMQKVKDC-----NFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV D      N SNQG VLEDD EYQLI ECN L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVADALEMDSNVSNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKKMVLNFVE RMGYI PNLSA+V SAVAAKLMG AGGL ALA  
Sbjct: 186 QKTIDACDRALTLDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLVALAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFRVGYIEQTEIFQSTPPPLKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLIAAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. NCBI nr
Match: XP_022966885.1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog [Cucurbita maxima])

HSP 1 Score: 528.9 bits (1361), Expect = 3.8e-146
Identity = 314/476 (65.97%), Postives = 338/476 (71.01%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EEDVD +NME DID      ESLNYDDLD+V+KL K+QRY D
Sbjct: 6   DSFLADLDELSDEDNFPDEEDVDAENMEEDIDGDLADLESLNYDDLDNVSKLQKSQRYSD 65

Query: 67  TMQKV-----KDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV     KD N SNQGLVLEDD EYQLI ECN L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVEDALQKDSNISNQGLVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKKMVLNFVE RMGYI PNLSA+V SAVAAKLMG AGGLA+LA  
Sbjct: 186 QKTIDACDRALALDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLASLAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFR+GYIEQTEIFQSTPP LKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRLGYIEQTEIFQSTPPHLKMRACRLVSAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. ExPASy Swiss-Prot
Match: Q8RXN6 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog OS=Arabidopsis thaliana OX=3702 GN=PRP31 PE=1 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 8.5e-117
Identity = 256/477 (53.67%), Postives = 305/477 (63.94%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        E D DV   E D+D      E+LNYDDLD+V+KL K+QRY D
Sbjct: 6   DSFLADLDELSDNEAELDENDGDVGKEEEDVDMDMADLETLNYDDLDNVSKLQKSQRYAD 65

Query: 67  TMQKV-----KDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            M KV     KD + + +G VLEDD EY+LI +CN L VDIE+EI+I+HN I+D+Y+LKF
Sbjct: 66  IMHKVEEALGKDSDGAEKGTVLEDDPEYKLIVDCNQLSVDIENEIVIVHNFIKDKYKLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
            ELESLVHH +DYA VVKKIGNE DL+LVDL  LLP A++MV+SVT  TT          
Sbjct: 126 QELESLVHHPIDYACVVKKIGNETDLALVDLADLLPSAIIMVVSVTALTTKGSALPEDVL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SA+K VL FVE +MG I PNLSA+V SAVAAKLMG AGGL+ALA  
Sbjct: 186 QKVLEACDRALDLDSARKKVLEFVESKMGSIAPNLSAIVGSAVAAKLMGTAGGLSALAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQ+LG K KN  GFS+ATSQ RVGY+EQTEI+QSTPP L+ R              
Sbjct: 246 PACNVQVLGHKRKNLAGFSSATSQSRVGYLEQTEIYQSTPPGLQARAGRLVAAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            D+TR DP GI+G+ F++EI KK EKWQEPPP +QPK LPVPDS+P+K+R GRR RK+KE
Sbjct: 306 VDATRGDPLGISGKAFREEIRKKIEKWQEPPPARQPKPLPVPDSEPKKRRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RY  T+MRKLANRM FG P+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYQVTDMRKLANRMAFGTPEESSLGDGLGEGYGMLGQAGSNRLRVSSVPSKLKINAKVAK 425

[Close]

BLAST of Sed0011360.1 vs. ExPASy Swiss-Prot
Match: Q8CCF0 (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus OX=10090 GN=Prpf31 PE=1 SV=3)

HSP 1 Score: 229.2 bits (583), Expect = 8.1e-59
Identity = 147/377 (38.99%), Postives = 211/377 (55.97%), Query Frame = 0


Query: 15  ELEEDVDVQNMEVDIDESLNYDDLDSVTKLHKTQRYIDTMQKV-----KDCNFSNQGLVL 74
           E EE+  +++++ +    L+ D + S+ KL  ++ + + M K+     K  N S     +
Sbjct: 25  EEEEEPAIEDVQEETQLDLSGDSVKSIAKLWDSKMFAEIMMKIEEYISKQANVSEVMGPV 84

Query: 75  EDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKKIGN 134
           E   EY++I + N L V+IE+E+ IIH  IRD+Y  +FPELESLV +++DY R VK++GN
Sbjct: 85  EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGN 144

Query: 135 EID--LSLVDLEGLLPLAVLMVISVTPSTT-----------------------NSAKKMV 194
            +D   +  +L+ +L  A +MV+SVT STT                       N++K  +
Sbjct: 145 SLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRI 204

Query: 195 LNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMTPACNVQLLGAKNKNFVGFST 254
             +VE RM +I PNLS ++ ++ AAK+MG AGGL  L+  PACN+ LLGA+ K   GFS+
Sbjct: 205 YEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSS 264

Query: 255 ATSQFRVGYIEQTEIFQSTPPPLKMRV-------------FDSTRRDPTGITGRVFKDEI 314
            +     GYI  ++I QS PP L+ +               DS      G  G   KDEI
Sbjct: 265 TSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI 324

Query: 315 VKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKERYATTEMRKLANRMQFGVPQ 349
            +K +KWQEPPP KQ K LP P    +KKR GRR RK+KER   TE+RK ANRM FG  +
Sbjct: 325 ERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIE 384

[Close]

BLAST of Sed0011360.1 vs. ExPASy Swiss-Prot
Match: Q8WWY3 (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens OX=9606 GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-57
Identity = 145/377 (38.46%), Postives = 210/377 (55.70%), Query Frame = 0


Query: 15  ELEEDVDVQNMEVDIDESLNYDDLDSVTKLHKTQRYIDTMQKV-----KDCNFSNQGLVL 74
           E EE+  +++++ +    L+ D + ++ KL  ++ + + M K+     K    S     +
Sbjct: 25  EEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPV 84

Query: 75  EDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKKIGN 134
           E   EY++I + N L V+IE+E+ IIH  IRD+Y  +FPELESLV +++DY R VK++GN
Sbjct: 85  EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGN 144

Query: 135 EID--LSLVDLEGLLPLAVLMVISVTPSTT-----------------------NSAKKMV 194
            +D   +  +L+ +L  A +MV+SVT STT                       N++K  +
Sbjct: 145 SLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRI 204

Query: 195 LNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMTPACNVQLLGAKNKNFVGFST 254
             +VE RM +I PNLS ++ ++ AAK+MG AGGL  L+  PACN+ LLGA+ K   GFS+
Sbjct: 205 YEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSS 264

Query: 255 ATSQFRVGYIEQTEIFQSTPPPLKMRV-------------FDSTRRDPTGITGRVFKDEI 314
            +     GYI  ++I QS PP L+ +               DS      G  G   KDEI
Sbjct: 265 TSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI 324

Query: 315 VKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKERYATTEMRKLANRMQFGVPQ 349
            +K +KWQEPPP KQ K LP P    +KKR GRR RK+KER   TE+RK ANRM FG  +
Sbjct: 325 ERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIE 384

[Close]

BLAST of Sed0011360.1 vs. ExPASy Swiss-Prot
Match: Q5U5C5 (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis OX=8355 GN=prpf31 PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.9e-57
Identity = 153/380 (40.26%), Postives = 212/380 (55.79%), Query Frame = 0


Query: 14  DELE--EDVDVQNMEVDIDESLNYDDLDSVTKLHKTQRYIDTMQKV-----KDCNFSNQG 73
           D+LE  E+VD + M+VD    LN + + S+ KL  ++ + + + K+     K    S   
Sbjct: 26  DDLETIEEVD-EEMQVD----LNAESVKSIAKLSDSKLFSEILLKIEGYIQKQPKASEVM 85

Query: 74  LVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKK 133
             +E   EY++I + N L V+IE+E+ IIH  IRD+Y  +FPELESLV +++DY R VK+
Sbjct: 86  GPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKE 145

Query: 134 IGNEID--LSLVDLEGLLPLAVLMVISVTPSTT-----------------------NSAK 193
           +GN +D   +  +L+ +L  A +MV+SVT STT                       N +K
Sbjct: 146 LGNNLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSK 205

Query: 194 KMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMTPACNVQLLGAKNKNFVG 253
             +  +VE RM +I PNLS +V ++ AAK+MG AGGL  L+  PACNV LLGA+ K   G
Sbjct: 206 HRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTG 265

Query: 254 FSTATSQFRVGYIEQTEIFQSTPPPLKMRV-------------FDSTRRDPTGITGRVFK 313
           FS+ +     GYI  +EI QS P  L  +               DS   +P G  G   K
Sbjct: 266 FSSTSVLPHTGYIYHSEIVQSLPSDLHRKAARLVSAKCTLASRVDSFHENPEGKIGYDLK 325

Query: 314 DEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKERYATTEMRKLANRMQFG 349
           +EI +K +KWQEPPP KQ K LP P    +KKR GRR RK+KER   TE+RK ANRM FG
Sbjct: 326 EEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFG 385

[Close]

BLAST of Sed0011360.1 vs. ExPASy Swiss-Prot
Match: Q6NVP6 (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis OX=8364 GN=prpf31 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.2e-55
Identity = 149/378 (39.42%), Postives = 208/378 (55.03%), Query Frame = 0


Query: 14  DELEEDVDVQNMEVDIDESLNYDDLDSVTKLHKTQRYIDTMQKV-----KDCNFSNQGLV 73
           D+LE   +VQ  E+ +D  LN + + S+ KL  ++ + + + K+     K    S     
Sbjct: 26  DDLETIEEVQE-EMQVD--LNAESVKSIAKLSDSKLFSEILLKIDGYIKKQPKASEVMGP 85

Query: 74  LEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKKIG 133
           +E   EY++I + N L V+IE+E+ IIH  IRD+Y  +FPELESLV +++DY R VK++G
Sbjct: 86  VEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELG 145

Query: 134 NEID--LSLVDLEGLLPLAVLMVISVTPSTT-----------------------NSAKKM 193
           N +D   +  +L+ +L  A +MV+SVT STT                       N +K  
Sbjct: 146 NNLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHR 205

Query: 194 VLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMTPACNVQLLGAKNKNFVGFS 253
           +  +VE RM +I PNLS +V ++ AAK+MG AGGL  L+  PACNV LLGA+ K   GFS
Sbjct: 206 IYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSGFS 265

Query: 254 TATSQFRVGYIEQTEIFQSTPPPLKMRV-------------FDSTRRDPTGITGRVFKDE 313
           + +     GYI  ++I QS PP L  +               DS      G  G   K+E
Sbjct: 266 STSVLPHTGYIYHSDIVQSLPPDLHRKAARLVSAKCTLAARVDSFHESSEGKVGYDLKEE 325

Query: 314 IVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKERYATTEMRKLANRMQFGVP 349
           I +K +KWQEPPP KQ K LP P    +KKR GRR RK+KER   TE+RK ANRM F   
Sbjct: 326 IERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFAEI 385

[Close]

BLAST of Sed0011360.1 vs. ExPASy TrEMBL
Match: A0A6J1DBC9 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019139 PE=3 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.5e-148
Identity = 319/476 (67.02%), Postives = 339/476 (71.22%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EEDVD +NME DID      ESLNYDDLDSV+KL KTQRY D
Sbjct: 6   DSFLADLDELSDEDNFLDEEDVDAENMEEDIDGDLADLESLNYDDLDSVSKLQKTQRYND 65

Query: 67  TMQKV-----KDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV     KD N SNQGLVLEDD EYQLI ECN+L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVEGALQKDSNISNQGLVLEDDPEYQLIVECNSLSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKK VLNFVE RMGYI PNLSA+V SAVAAKLMG AGGLAALA  
Sbjct: 186 QKTIDACDRALALDSAKKKVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLAALAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFRVGYIEQTEIFQSTPPPLKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLIAAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. ExPASy TrEMBL
Match: A0A6J1G0W2 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449657 PE=3 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 2.2e-147
Identity = 316/476 (66.39%), Postives = 338/476 (71.01%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EEDVD +NME DID      ESLNYDDLD+V+KL K+QRY D
Sbjct: 6   DSFLADLDELSDEDNFPDEEDVDAENMEEDIDGDLADLESLNYDDLDNVSKLQKSQRYSD 65

Query: 67  TMQKV-----KDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV     KD N SNQGLVLEDD EYQLI ECN L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVEDALQKDSNISNQGLVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKKMVLNFVE RMGYI PNLSA+V SAVAAKLMG AGGL +LA  
Sbjct: 186 QKTIDACDRALALDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLGSLAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFRVGYIEQTEIFQSTPPPLKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLVSAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. ExPASy TrEMBL
Match: A0A6J1KRI6 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497587 PE=3 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 8.2e-147
Identity = 316/476 (66.39%), Postives = 335/476 (70.38%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EED D +NME DID      ESLNYDDLDSV+KL KTQRY D
Sbjct: 6   DSFLADLDELSDEDNFLDEEDADAENMEEDIDGDLADLESLNYDDLDSVSKLQKTQRYND 65

Query: 67  TMQKVKDC-----NFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV D      N SNQG VLEDD EYQLI ECN L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVADALEMDSNVSNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKKMVLNFVE RMGYI PNLSA+V SAVAAKLMG AGGL ALA  
Sbjct: 186 QKTIDACDRALTLDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLVALAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFRVGYIEQTEIFQSTPPPLKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLIAAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. ExPASy TrEMBL
Match: A0A6J1GXP7 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458320 PE=3 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 8.2e-147
Identity = 316/476 (66.39%), Postives = 335/476 (70.38%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EED D +NME DID      ESLNYDDLDSV+KL KTQRY D
Sbjct: 6   DSFLADLDELSDEDNFLDEEDADAENMEEDIDGDLADLESLNYDDLDSVSKLQKTQRYND 65

Query: 67  TMQKVKDC-----NFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV D      N SNQG VLEDD EYQLI ECN L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVADALEMDSNVSNQGFVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKKMVLNFVE RMGYI PNLSA+V SAVAAKLMG AGGL ALA  
Sbjct: 186 QKTIDACDRALTLDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLVALAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFRVGYIEQTEIFQSTPPPLKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLIAAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. ExPASy TrEMBL
Match: A0A6J1HSU1 (U4/U6 small nuclear ribonucleoprotein Prp31 homolog OS=Cucurbita maxima OX=3661 GN=LOC111466452 PE=3 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 1.8e-146
Identity = 314/476 (65.97%), Postives = 338/476 (71.01%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        EEDVD +NME DID      ESLNYDDLD+V+KL K+QRY D
Sbjct: 6   DSFLADLDELSDEDNFPDEEDVDAENMEEDIDGDLADLESLNYDDLDNVSKLQKSQRYSD 65

Query: 67  TMQKV-----KDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            MQKV     KD N SNQGLVLEDD EYQLI ECN L VDIE+EIIIIHN IRD+YRLKF
Sbjct: 66  IMQKVEDALQKDSNISNQGLVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
           PELESLVHH +DYARVVKKIGNE+DL+LVDLEGLLP AV+MV+SVT STT          
Sbjct: 126 PELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEIL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SAKKMVLNFVE RMGYI PNLSA+V SAVAAKLMG AGGLA+LA  
Sbjct: 186 QKTIDACDRALALDSAKKMVLNFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLASLAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQLLGAK KN  GFSTATSQFR+GYIEQTEIFQSTPP LKMR              
Sbjct: 246 PACNVQLLGAKKKNLAGFSTATSQFRLGYIEQTEIFQSTPPHLKMRACRLVSAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            DSTR DPTG TGRVFKDEI+KK EKWQEPPP KQPK LPVPDS+P+KKR GRR RK+KE
Sbjct: 306 VDSTRGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RYATTEMRKLANRMQFGVP+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKF 425

[Close]

BLAST of Sed0011360.1 vs. TAIR 10
Match: AT1G60170.1 (pre-mRNA processing ribonucleoprotein binding region-containing protein )

HSP 1 Score: 421.8 bits (1083), Expect = 6.0e-118
Identity = 256/477 (53.67%), Postives = 305/477 (63.94%), Query Frame = 0


Query: 7   NSFLAYLDEL--------EEDVDVQNMEVDID------ESLNYDDLDSVTKLHKTQRYID 66
           +SFLA LDEL        E D DV   E D+D      E+LNYDDLD+V+KL K+QRY D
Sbjct: 6   DSFLADLDELSDNEAELDENDGDVGKEEEDVDMDMADLETLNYDDLDNVSKLQKSQRYAD 65

Query: 67  TMQKV-----KDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKF 126
            M KV     KD + + +G VLEDD EY+LI +CN L VDIE+EI+I+HN I+D+Y+LKF
Sbjct: 66  IMHKVEEALGKDSDGAEKGTVLEDDPEYKLIVDCNQLSVDIENEIVIVHNFIKDKYKLKF 125

Query: 127 PELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVISVTPSTT---------- 186
            ELESLVHH +DYA VVKKIGNE DL+LVDL  LLP A++MV+SVT  TT          
Sbjct: 126 QELESLVHHPIDYACVVKKIGNETDLALVDLADLLPSAIIMVVSVTALTTKGSALPEDVL 185

Query: 187 -------------NSAKKMVLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMT 246
                        +SA+K VL FVE +MG I PNLSA+V SAVAAKLMG AGGL+ALA  
Sbjct: 186 QKVLEACDRALDLDSARKKVLEFVESKMGSIAPNLSAIVGSAVAAKLMGTAGGLSALAKM 245

Query: 247 PACNVQLLGAKNKNFVGFSTATSQFRVGYIEQTEIFQSTPPPLKMRV------------- 306
           PACNVQ+LG K KN  GFS+ATSQ RVGY+EQTEI+QSTPP L+ R              
Sbjct: 246 PACNVQVLGHKRKNLAGFSSATSQSRVGYLEQTEIYQSTPPGLQARAGRLVAAKSTLAAR 305

Query: 307 FDSTRRDPTGITGRVFKDEIVKKSEKWQEPPPTKQPKSLPVPDSKPQKKRCGRRQRKVKE 366
            D+TR DP GI+G+ F++EI KK EKWQEPPP +QPK LPVPDS+P+K+R GRR RK+KE
Sbjct: 306 VDATRGDPLGISGKAFREEIRKKIEKWQEPPPARQPKPLPVPDSEPKKRRGGRRLRKMKE 365

Query: 367 RYATTEMRKLANRMQFGVPQESSLGDGFGEEYGMLGQ----------------------- 388
           RY  T+MRKLANRM FG P+ESSLGDG GE YGMLGQ                       
Sbjct: 366 RYQVTDMRKLANRMAFGTPEESSLGDGLGEGYGMLGQAGSNRLRVSSVPSKLKINAKVAK 425

[Close]

BLAST of Sed0011360.1 vs. TAIR 10
Match: AT1G70400.1 (CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 479 Blast hits to 479 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 138; Plants - 124; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). )

HSP 1 Score: 139.4 bits (350), Expect = 6.0e-33
Identity = 83/161 (51.55%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 32  SLNYDDLDSVTKLHKTQRYIDTMQKVKDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDE 91
           +L YDDLDSV+KL K++RY D MQ+V++   + +G VLE     +LI +C  LLVDIE+E
Sbjct: 8   TLTYDDLDSVSKLQKSRRYADIMQQVEE---ALEGSVLE---YKKLIVDCKQLLVDIENE 67

Query: 92  IIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVIS 151
           I+I+ N IRD+YR+KF ELE LV H +DYARVVK+IGNE+DL LVDLEGLLP A++MV+ 
Sbjct: 68  IVIVQNFIRDKYRVKFQELELLVPHPIDYARVVKRIGNEMDLKLVDLEGLLPSAMIMVLL 127

Query: 152 VTPSTT-----------------------NSAKKMVLNFVE 170
           VT  TT                       +SA+K VL FV+
Sbjct: 128 VTALTTKGNQLPEDVLLKTIDACDRALDLDSARKKVLEFVD 162

[Close]

BLAST of Sed0011360.1 vs. TAIR 10
Match: AT1G70400.2 (CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 139.0 bits (349), Expect = 7.8e-33
Identity = 76/126 (60.32%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 32  SLNYDDLDSVTKLHKTQRYIDTMQKVKDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDE 91
           +L YDDLDSV+KL K++RY D MQ+V++   + +G VLE     +LI +C  LLVDIE+E
Sbjct: 8   TLTYDDLDSVSKLQKSRRYADIMQQVEE---ALEGSVLE---YKKLIVDCKQLLVDIENE 67

Query: 92  IIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVIS 151
           I+I+ N IRD+YR+KF ELE LV H +DYARVVK+IGNE+DL LVDLEGLLP A++MV+ 
Sbjct: 68  IVIVQNFIRDKYRVKFQELELLVPHPIDYARVVKRIGNEMDLKLVDLEGLLPSAMIMVLL 127

Query: 152 VTPSTT 158
           VT  TT
Sbjct: 128 VTALTT 127

[Close]

BLAST of Sed0011360.1 vs. TAIR 10
Match: AT1G70400.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 484 Blast hits to 484 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 134; Plants - 124; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). )

HSP 1 Score: 139.0 bits (349), Expect = 7.8e-33
Identity = 76/126 (60.32%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 32  SLNYDDLDSVTKLHKTQRYIDTMQKVKDCNFSNQGLVLEDDHEYQLIAECNTLLVDIEDE 91
           +L YDDLDSV+KL K++RY D MQ+V++   + +G VLE     +LI +C  LLVDIE+E
Sbjct: 8   TLTYDDLDSVSKLQKSRRYADIMQQVEE---ALEGSVLE---YKKLIVDCKQLLVDIENE 67

Query: 92  IIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKKIGNEIDLSLVDLEGLLPLAVLMVIS 151
           I+I+ N IRD+YR+KF ELE LV H +DYARVVK+IGNE+DL LVDLEGLLP A++MV+ 
Sbjct: 68  IVIVQNFIRDKYRVKFQELELLVPHPIDYARVVKRIGNEMDLKLVDLEGLLPSAMIMVLL 127

Query: 152 VTPSTT 158
           VT  TT
Sbjct: 128 VTALTT 127

[Close]

BLAST of Sed0011360.1 vs. TAIR 10
Match: AT5G27120.1 (NOP56-like pre RNA processing ribonucleoprotein )

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-09
Identity = 53/208 (25.48%), Postives = 90/208 (43.27%), Query Frame = 0


Query: 67  LVLEDDHEYQLIAECNTLLVDIEDEIIIIHNLIRDRYRLKFPELESLVHHSVDYARVVKK 126
           L    D    +I +   LL D++ E+      +R+ +   FPEL  +V  ++ YA+ VK 
Sbjct: 149 LKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIVQDNILYAKAVKL 208

Query: 127 IGNEIDLSLVDLEGLL------PLAVLMVISVTPSTTN-----------------SAKKM 186
           +GN I+ + +D   +L       L    VIS+    ++                   +  
Sbjct: 209 MGNRINAAKLDFSEILADEIEAELKEAAVISMGTEVSDLDLLHIRELCDQVLSLAEYRAQ 268

Query: 187 VLNFVEHRMGYITPNLSAVVASAVAAKLMGAAGGLAALAMTPACNVQLLGAKNKNFVGFS 246
           + ++++ RM  I PNL+A+V   V A+L+   G L  LA  P   VQ+LGA+   F    
Sbjct: 269 LYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALK 328

Query: 247 TATSQFRVGYIEQTEIFQSTPPPLKMRV 252
           T  +  + G I    +     P  K ++
Sbjct: 329 TKHATPKYGLIFHASVVGQAAPKNKGKI 356

The following BLAST results are available for this feature:

BLAST of Sed0011360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151138.1	3.1e-148	67.02	U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Momordica charan...	[more]
XP_022945419.1	4.4e-147	66.39	U4/U6 small nuclear ribonucleoprotein Prp31 homolog [Cucurbita moschata] >XP_022...	[more]
KAG7032269.1	1.7e-146	66.39	U4/U6 small nuclear ribonucleoprotein Prp31-like protein, partial [Cucurbita arg...	[more]
XP_022956658.1	1.7e-146	66.39	U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 [Cucurbita moscha...	[more]
XP_022966885.1	3.8e-146	65.97	U4/U6 small nuclear ribonucleoprotein Prp31 homolog [Cucurbita maxima]	[more]

BLAST of Sed0011360.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXN6	8.5e-117	53.67	U4/U6 small nuclear ribonucleoprotein Prp31 homolog OS=Arabidopsis thaliana OX=3...	[more]
Q8CCF0	8.1e-59	38.99	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus OX=10090 GN=Prpf31 P...	[more]
Q8WWY3	1.2e-57	38.46	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens OX=9606 GN=PRPF31 PE...	[more]
Q5U5C5	9.9e-57	40.26	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis OX=8355 GN=prpf31 ...	[more]
Q6NVP6	3.2e-55	39.42	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis OX=8364 GN=prp...	[more]

BLAST of Sed0011360.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBC9	1.5e-148	67.02	U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 OS=Momordica char...	[more]
A0A6J1G0W2	2.2e-147	66.39	U4/U6 small nuclear ribonucleoprotein Prp31 homolog OS=Cucurbita moschata OX=366...	[more]
A0A6J1KRI6	8.2e-147	66.39	U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1GXP7	8.2e-147	66.39	U4/U6 small nuclear ribonucleoprotein Prp31 homolog isoform X1 OS=Cucurbita mosc...	[more]
A0A6J1HSU1	1.8e-146	65.97	U4/U6 small nuclear ribonucleoprotein Prp31 homolog OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Sed0011360.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60170.1	6.0e-118	53.67	pre-mRNA processing ribonucleoprotein binding region-containing protein	[more]
AT1G70400.1	6.0e-33	51.55	CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thalian...	[more]
AT1G70400.2	7.8e-33	60.32	CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thalian...	[more]
AT1G70400.3	7.8e-33	60.32	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G27120.1	4.6e-09	25.48	NOP56-like pre RNA processing ribonucleoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012976	NOSIC	SMART	SM00931	NOSIC_2	coord: 77..129 e-value: 4.8E-19 score: 79.3
IPR019175	Prp31 C-terminal	PFAM	PF09785	Prp31_C	coord: 285..350 e-value: 6.1E-23 score: 82.1
None	No IPR available	GENE3D	1.10.287.4070		coord: 61..160 e-value: 4.6E-32 score: 112.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..310
IPR002687	Nop domain	PFAM	PF01798	Nop	coord: 158..251 e-value: 1.2E-23 score: 83.8 coord: 84..159 e-value: 1.1E-13 score: 51.1
IPR002687	Nop domain	PROSITE	PS51358	NOP	coord: 175..291 score: 19.808155
IPR042239	Nop, C-terminal domain	GENE3D	1.10.246.90	Nop domain	coord: 164..257 e-value: 1.4E-24 score: 88.2
IPR027105	U4/U6 small nuclear ribonucleoprotein Prp31	PANTHER	PTHR13904	PRE-MRNA SPLICING FACTOR PRP31	coord: 7..353
IPR036070	Nop domain superfamily	SUPERFAMILY	89124	Nop domain	coord: 71..280

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0011360	Sed0011360	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011360.1-cds	Sed0011360.1-cds-LG09:36316120..36316193	CDS
Sed0011360.1-cds	Sed0011360.1-cds-LG09:36316242..36316287	CDS
Sed0011360.1-cds	Sed0011360.1-cds-LG09:36316322..36316611	CDS
Sed0011360.1-cds	Sed0011360.1-cds-LG09:36316651..36316932	CDS
Sed0011360.1-cds	Sed0011360.1-cds-LG09:36316964..36317435	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0011360.1-exon	Sed0011360.1-exon-LG09:36316120..36316193	exon
Sed0011360.1-exon	Sed0011360.1-exon-LG09:36316242..36316287	exon
Sed0011360.1-exon	Sed0011360.1-exon-LG09:36316322..36316611	exon
Sed0011360.1-exon	Sed0011360.1-exon-LG09:36316651..36316932	exon
Sed0011360.1-exon	Sed0011360.1-exon-LG09:36316964..36317435	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0011360.1	Sed0011360.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000244	spliceosomal tri-snRNP complex assembly
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005687	U4 snRNP