Sed0010983.1 (mRNA) Chayote v1

Overview


Name	Sed0010983.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG09: 31829385 .. 31830444 (+)
Sequence length	963
RNA-Seq Expression	Sed0010983.1
Synteny	Sed0010983.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTTCCTTGTCGGTACGAAAAATTAACCAAATTTTGCTTTATTTGTGGGTTGATAGGGCATTGGCAAAAGGATGTGATATTGACGTGGGGAAGAAGGGTTAATTTTGAGTGAAGCAGCATATGGTCCATGGTTAAGGGCAACAGAAGTTAGAAAAGGAGTAGCAAACAAGGAGGTAGTTTTGGGCCAGAAGGTGACAGAGGTGGAGGGGTCTATTGGGATAGGGAAAGGTGTTTGGAATTCTGATTGGAATTCCGGTGGAGGAAGAGGTGCACATCCGGGGAGGGGTAGAGGGACAGGAGTTCAAAGAGGTAGTGGGATAGGGGTTGAAAGTAGTTGGTGGCGAAAAGGTGTTAGAGATGAGGGTGATATTGTTCTAGCTAATAAAAGAAGTAAGAGGGATGGTGGAGATGGCGAGGATTCTAATTCTGGAGTTGCGAAGGGGCTGAGAGGGGTTTCGACAGTGATGGTCTCAGTCGTTCAATTGGAACGTACTGGGCTGAAAGATGCAGAGGCGGAGAAATCTAATGACGACGATGGAAATTTTCTTAGTCAGAACGTTACGAAAGAATTAATGGGGGAAGGAGCCATTGAAGGCCAAATTGTGATGCCTGCTTTGAAAAGAGATGGTCGGATGGAAATTGATTTAATGTCTGAAAATTCTGCAAATAGAATTTTGGTGGACCCAAGTAGTAAGTTAATGTTGGGCAATTTGGATTCTCACTCTAAGAGTCAGATTGATATGCTGTTGGTGGGTCCTACTCAAGATGTGGCTAGCTCCATTACTATCTGTCCGATAATTAAAAAACCCAAGTTGTGGAAGAGGCAAGATAACAAAAGGGACACTGATACTCAGATGAATTGTGCTAATCCGACGATGCCATCCAGAAATTCTTCATTGATGAATGGAAAATGCTTATTTGAGCAACTTAATGAAAATATTGTTGGCATTGAATCAGCTAAGAAAATAAAATTGCAACCTTGGAATGAGATTGCATCTGATGAAAGTATAACTATTGGTGCTCATTATTCCCCAACAGCGACCCCTAATGAGTAG

mRNA sequence

ATGTTCGTTCCTTGTCGTGAAGCAGCATATGGTCCATGGTTAAGGGCAACAGAAGTTAGAAAAGGAGTAGCAAACAAGGAGGTAGTTTTGGGCCAGAAGGTGACAGAGGTGGAGGGGTCTATTGGGATAGGGAAAGGTGTTTGGAATTCTGATTGGAATTCCGGTGGAGGAAGAGGTGCACATCCGGGGAGGGGTAGAGGGACAGGAGTTCAAAGAGGTAGTGGGATAGGGGTTGAAAGTAGTTGGTGGCGAAAAGGTGTTAGAGATGAGGGTGATATTGTTCTAGCTAATAAAAGAAGTAAGAGGGATGGTGGAGATGGCGAGGATTCTAATTCTGGAGTTGCGAAGGGGCTGAGAGGGGTTTCGACAGTGATGGTCTCAGTCGTTCAATTGGAACGTACTGGGCTGAAAGATGCAGAGGCGGAGAAATCTAATGACGACGATGGAAATTTTCTTAGTCAGAACGTTACGAAAGAATTAATGGGGGAAGGAGCCATTGAAGGCCAAATTGTGATGCCTGCTTTGAAAAGAGATGGTCGGATGGAAATTGATTTAATGTCTGAAAATTCTGCAAATAGAATTTTGGTGGACCCAAGTAGTAAGTTAATGTTGGGCAATTTGGATTCTCACTCTAAGAGTCAGATTGATATGCTGTTGGTGGGTCCTACTCAAGATGTGGCTAGCTCCATTACTATCTGTCCGATAATTAAAAAACCCAAGTTGTGGAAGAGGCAAGATAACAAAAGGGACACTGATACTCAGATGAATTGTGCTAATCCGACGATGCCATCCAGAAATTCTTCATTGATGAATGGAAAATGCTTATTTGAGCAACTTAATGAAAATATTGTTGGCATTGAATCAGCTAAGAAAATAAAATTGCAACCTTGGAATGAGATTGCATCTGATGAAAGTATAACTATTGGTGCTCATTATTCCCCAACAGCGACCCCTAATGAGTAG

Coding sequence (CDS)

ATGTTCGTTCCTTGTCGTGAAGCAGCATATGGTCCATGGTTAAGGGCAACAGAAGTTAGAAAAGGAGTAGCAAACAAGGAGGTAGTTTTGGGCCAGAAGGTGACAGAGGTGGAGGGGTCTATTGGGATAGGGAAAGGTGTTTGGAATTCTGATTGGAATTCCGGTGGAGGAAGAGGTGCACATCCGGGGAGGGGTAGAGGGACAGGAGTTCAAAGAGGTAGTGGGATAGGGGTTGAAAGTAGTTGGTGGCGAAAAGGTGTTAGAGATGAGGGTGATATTGTTCTAGCTAATAAAAGAAGTAAGAGGGATGGTGGAGATGGCGAGGATTCTAATTCTGGAGTTGCGAAGGGGCTGAGAGGGGTTTCGACAGTGATGGTCTCAGTCGTTCAATTGGAACGTACTGGGCTGAAAGATGCAGAGGCGGAGAAATCTAATGACGACGATGGAAATTTTCTTAGTCAGAACGTTACGAAAGAATTAATGGGGGAAGGAGCCATTGAAGGCCAAATTGTGATGCCTGCTTTGAAAAGAGATGGTCGGATGGAAATTGATTTAATGTCTGAAAATTCTGCAAATAGAATTTTGGTGGACCCAAGTAGTAAGTTAATGTTGGGCAATTTGGATTCTCACTCTAAGAGTCAGATTGATATGCTGTTGGTGGGTCCTACTCAAGATGTGGCTAGCTCCATTACTATCTGTCCGATAATTAAAAAACCCAAGTTGTGGAAGAGGCAAGATAACAAAAGGGACACTGATACTCAGATGAATTGTGCTAATCCGACGATGCCATCCAGAAATTCTTCATTGATGAATGGAAAATGCTTATTTGAGCAACTTAATGAAAATATTGTTGGCATTGAATCAGCTAAGAAAATAAAATTGCAACCTTGGAATGAGATTGCATCTGATGAAAGTATAACTATTGGTGCTCATTATTCCCCAACAGCGACCCCTAATGAGTAG

Protein sequence

MFVPCREAAYGPWLRATEVRKGVANKEVVLGQKVTEVEGSIGIGKGVWNSDWNSGGGRGAHPGRGRGTGVQRGSGIGVESSWWRKGVRDEGDIVLANKRSKRDGGDGEDSNSGVAKGLRGVSTVMVSVVQLERTGLKDAEAEKSNDDDGNFLSQNVTKELMGEGAIEGQIVMPALKRDGRMEIDLMSENSANRILVDPSSKLMLGNLDSHSKSQIDMLLVGPTQDVASSITICPIIKKPKLWKRQDNKRDTDTQMNCANPTMPSRNSSLMNGKCLFEQLNENIVGIESAKKIKLQPWNEIASDESITIGAHYSPTATPNE

Homology

The following BLAST results are available for this feature:

BLAST of Sed0010983.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0010983.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0010983.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0010983.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0010983	Sed0010983	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010983.1-exon	Sed0010983.1-exon-LG09:31829385..31829401	exon
Sed0010983.1-exon	Sed0010983.1-exon-LG09:31829499..31830444	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010983.1-cds	Sed0010983.1-cds-LG09:31829385..31829401	CDS
Sed0010983.1-cds	Sed0010983.1-cds-LG09:31829499..31830444	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0010983.1	Sed0010983.1-protein	polypeptide