Sed0008162.1 (mRNA) Chayote v1

Overview


Name	Sed0008162.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	transcription factor bHLH149-like
Location	LG11: 4051328 .. 4052366 (+)
Sequence length	860
RNA-Seq Expression	Sed0008162.1
Synteny	Sed0008162.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAGGATAAAAATAGAATATGTATATAAATAAGAAGAAGAGAGGGAAAGAAATGAGAGAGAAGGAAACAATTTGAACTCACTGCCTCTGTTTCTCTCAAATTTCAATCCCCAAAATCCTTCACAAATCCTCCAAATTCAAGGTAAATTGTTCATCTCGATTCGATTCAATCAAATTGTTGTTTCTTGCTTGTATCGCGTTTTTTATTTCTCGATTTGTTCTTCTTCTGGATTCTGAAATTGATCGATTCTGAGTAGATCGCTAGGTTTTGTTGTTGTTGTTGTTTTTCGAATCGGCTGATTGTTTTTGTTTCTTCTTCAGATCTGGATTGATTTCTGTGGAGCAGATACGAGATTTTGATTTTCGTTTATGGAGGCGGAGAAATCGAGGAAATCCAGAGCGTTGCTGTTGTTGCAAGAACGGAAGTGGCGGACGGAGGTGGAACAACAGATCTACTCTTCTAACCTCGCGGAAGCGCTGCGGCGGCGGAGATCTCCGATGAACGGAAGGCTGGTTCGCGAAACCGCGGATTCCGTCCTCGCCGCCGCCGCCAAGGGGAGGACGCGATGGAGCCGCGCGATTCTTGCGAATCGGCTCCGCCAGAGGCTCGCGAGGAGGCGGCGGAGGACGGGGAAATCGATCGGCCGGAAACCGCCGCGCGCGGCGGAGGCGGAGAGGATCAGGAAGTTGCCGGCGGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTGGTTCCTGGCTGCCGGAAAGTCTCGTTGCCGAACCTTCTGGAGGAAACGAGCGATTACCTATCGGCTTTGGAGATGCAGGTGAAGGCTATGGCGGCGCTGGTCGAACTTCTCGCCGGAAATCAAAGTAATTTGCACGGAATTTCCAATGATTCTTGAGATTGATCACTCGGAAATTGAAATCGCCGTCGTGGTTTTTCTTTTTATTCTATCGATTTTTTTTCCAGGCAGTAATATTTTTTTATTTGTTTTGATATATGTATCTTATTGTATATGTTAAATTATAAATTTAGGTTTCGTTTAATAATTA

mRNA sequence

AAAAAAAGGATAAAAATAGAATATGTATATAAATAAGAAGAAGAGAGGGAAAGAAATGAGAGAGAAGGAAACAATTTGAACTCACTGCCTCTGTTTCTCTCAAATTTCAATCCCCAAAATCCTTCACAAATCCTCCAAATTCAAGATCTGGATTGATTTCTGTGGAGCAGATACGAGATTTTGATTTTCGTTTATGGAGGCGGAGAAATCGAGGAAATCCAGAGCGTTGCTGTTGTTGCAAGAACGGAAGTGGCGGACGGAGGTGGAACAACAGATCTACTCTTCTAACCTCGCGGAAGCGCTGCGGCGGCGGAGATCTCCGATGAACGGAAGGCTGGTTCGCGAAACCGCGGATTCCGTCCTCGCCGCCGCCGCCAAGGGGAGGACGCGATGGAGCCGCGCGATTCTTGCGAATCGGCTCCGCCAGAGGCTCGCGAGGAGGCGGCGGAGGACGGGGAAATCGATCGGCCGGAAACCGCCGCGCGCGGCGGAGGCGGAGAGGATCAGGAAGTTGCCGGCGGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTGGTTCCTGGCTGCCGGAAAGTCTCGTTGCCGAACCTTCTGGAGGAAACGAGCGATTACCTATCGGCTTTGGAGATGCAGGTGAAGGCTATGGCGGCGCTGGTCGAACTTCTCGCCGGAAATCAAAGTAATTTGCACGGAATTTCCAATGATTCTTGAGATTGATCACTCGGAAATTGAAATCGCCGTCGTGGTTTTTCTTTTTATTCTATCGATTTTTTTTCCAGGCAGTAATATTTTTTTATTTGTTTTGATATATGTATCTTATTGTATATGTTAAATTATAAATTTAGGTTTCGTTTAATAATTA

Coding sequence (CDS)

ATGGAGGCGGAGAAATCGAGGAAATCCAGAGCGTTGCTGTTGTTGCAAGAACGGAAGTGGCGGACGGAGGTGGAACAACAGATCTACTCTTCTAACCTCGCGGAAGCGCTGCGGCGGCGGAGATCTCCGATGAACGGAAGGCTGGTTCGCGAAACCGCGGATTCCGTCCTCGCCGCCGCCGCCAAGGGGAGGACGCGATGGAGCCGCGCGATTCTTGCGAATCGGCTCCGCCAGAGGCTCGCGAGGAGGCGGCGGAGGACGGGGAAATCGATCGGCCGGAAACCGCCGCGCGCGGCGGAGGCGGAGAGGATCAGGAAGTTGCCGGCGGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTGGTTCCTGGCTGCCGGAAAGTCTCGTTGCCGAACCTTCTGGAGGAAACGAGCGATTACCTATCGGCTTTGGAGATGCAGGTGAAGGCTATGGCGGCGCTGGTCGAACTTCTCGCCGGAAATCAAAGTAATTTGCACGGAATTTCCAATGATTCTTGA

Protein sequence

MEAEKSRKSRALLLLQERKWRTEVEQQIYSSNLAEALRRRRSPMNGRLVRETADSVLAAAAKGRTRWSRAILANRLRQRLARRRRRTGKSIGRKPPRAAEAERIRKLPAVQRKVKILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVELLAGNQSNLHGISNDS

Homology

[Close]

BLAST of Sed0008162.1 vs. NCBI nr
Match: XP_038890546.1 (transcription factor bHLH149 [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 7.4e-54
Identity = 138/197 (70.05%), Postives = 151/197 (76.65%), Query Frame = 0


Query: 1   MEAEKSRKSRALLLL---------------QERKWRTEVEQQIYSSNLAEALRR------ 60
           M+AE+S+ SR LL                 +E++WRTEVEQQIYSS LAEALRR      
Sbjct: 1   MDAEESKNSRRLLEQPNNRRKIVSDVTAEGREQRWRTEVEQQIYSSRLAEALRRVSRRRS 60

Query: 61  ---RRSPMNGRLVRETADSVLAAAAKGRTRWSRAILANRLRQRLARRRRRTGKSIGRKPP 120
               RSP+NGRLVRETAD VLAA AKGRTRWSRAILA+R RQRLA RRRRT K +G KP 
Sbjct: 61  SSYARSPINGRLVRETADCVLAATAKGRTRWSRAILASRFRQRLA-RRRRTKKLLGCKPS 120

Query: 121 RAAEA--ERIRKLPAVQRKVKILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALV 172
           R AEA  E+IRKLPAVQRKVKILGRLVPGCRK+S PNLLEE +DY+SALEMQVKAMAAL 
Sbjct: 121 RVAEAKNEKIRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALA 180

[Close]

BLAST of Sed0008162.1 vs. NCBI nr
Match: XP_023545324.1 (transcription factor bHLH149-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-52
Identity = 129/165 (78.18%), Postives = 139/165 (84.24%), Query Frame = 0


Query: 16  QERKWRTEVEQQIYSSNLAEALRR---------RRSPMNGRLVRETADSVLAAAAKGRTR 75
           +ER+WRTEVEQQIYSS LAEAL+R          RS +NGRLVRETAD VLAAAAKGRTR
Sbjct: 31  RERRWRTEVEQQIYSSRLAEALQRVGRLPSSPHARSTINGRLVRETADCVLAAAAKGRTR 90

Query: 76  WSRAILANRLRQRLARRRRRTGKSIGRKPPRAAEAERIRKLPAVQRKVKILGRLVPGCRK 135
           WSRAILANR RQRLA RRRRT KSIGRKP R AEA+  RKLPAVQRKVKILG+LVPGCRK
Sbjct: 91  WSRAILANRFRQRLA-RRRRTKKSIGRKPSRVAEAKN-RKLPAVQRKVKILGQLVPGCRK 150

Query: 136 VSLPNLLEETSDYLSALEMQVKAMAALVELLAGNQSNLHGISNDS 172
           +S PNLLEE +DY+SALEMQVKAMAAL E+LAG QSNL  ISNDS
Sbjct: 151 LSFPNLLEEATDYISALEMQVKAMAALAEILAGAQSNLLPISNDS 193

[Close]

BLAST of Sed0008162.1 vs. NCBI nr
Match: XP_022999326.1 (transcription factor bHLH149-like [Cucurbita maxima])

HSP 1 Score: 214.2 bits (544), Expect = 9.1e-52
Identity = 135/195 (69.23%), Postives = 147/195 (75.38%), Query Frame = 0


Query: 1   MEAEKSRKSRALLLL---------------QERKWRTEVEQQIYSSNLAEALRR------ 60
           M+AE+S+ SR  L                 +ER+WRTEVEQQIYSS LAEAL+R      
Sbjct: 1   MDAEESKNSRRSLQKPNKRLQIASNVSAEGRERRWRTEVEQQIYSSRLAEALQRVSRQRS 60

Query: 61  ---RRSPMNGRLVRETADSVLAAAAKGRTRWSRAILANRLRQRLARRRRRTGKSIGRKPP 120
               RS +NGRLVRETAD VLAAAAKGRTRWSRAILANR RQRLA RRRRT KSIGRKP 
Sbjct: 61  SPHARSTINGRLVRETADCVLAAAAKGRTRWSRAILANRFRQRLA-RRRRTKKSIGRKPS 120

Query: 121 RAAEAERIRKLPAVQRKVKILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVEL 172
           R  E +  RKLPAVQRKVKILGRLVPGCRK+S PNLLEE +DY+SALEMQVKAMAAL E+
Sbjct: 121 RVEEVKN-RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALAEI 180

[Close]

BLAST of Sed0008162.1 vs. NCBI nr
Match: XP_022946515.1 (transcription factor bHLH149-like [Cucurbita moschata] >KAG6599177.1 Transcription factor basic helix-loop-helix 149, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030115.1 Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 127/165 (76.97%), Postives = 137/165 (83.03%), Query Frame = 0


Query: 16  QERKWRTEVEQQIYSSNLAEALRR---------RRSPMNGRLVRETADSVLAAAAKGRTR 75
           +ER+WRTEVEQQIYSS LAEAL+R          RS +NGRLVRETAD VLAAAAKGRTR
Sbjct: 31  RERRWRTEVEQQIYSSRLAEALQRVGRLPSSPHARSTINGRLVRETADCVLAAAAKGRTR 90

Query: 76  WSRAILANRLRQRLARRRRRTGKSIGRKPPRAAEAERIRKLPAVQRKVKILGRLVPGCRK 135
           WSRAILANR RQRLA RRRRT KSIGRKP R AE +  RKLPAVQRKV+ILGRLVPGCRK
Sbjct: 91  WSRAILANRFRQRLA-RRRRTKKSIGRKPSRVAEVKN-RKLPAVQRKVRILGRLVPGCRK 150

Query: 136 VSLPNLLEETSDYLSALEMQVKAMAALVELLAGNQSNLHGISNDS 172
           +S PNLLEE +DY+SALEMQVKAMAAL E+LAG Q NL  ISNDS
Sbjct: 151 LSFPNLLEEATDYISALEMQVKAMAALAEILAGAQRNLLPISNDS 193

[Close]

BLAST of Sed0008162.1 vs. NCBI nr
Match: XP_022937811.1 (transcription factor bHLH149-like [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 2.9e-50
Identity = 126/159 (79.25%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 16  QERKWRTEVEQQIYSSNLAEALR---RRR------SPMNGRLVRETADSVLAAAAKGRTR 75
           +ERKWRTEVEQQIYSS L EA+R   RRR      SP+NGRLVRETAD VLAAAAKGRTR
Sbjct: 37  RERKWRTEVEQQIYSSKLVEAIRHVSRRRSSAQAGSPINGRLVRETADCVLAAAAKGRTR 96

Query: 76  WSRAILANRLRQRLARRRRRTGKSIGRKPPRAAE--AERIRKLPAVQRKVKILGRLVPGC 135
           WSRAILA+R RQRLA RRRRT K IGRKP R AE  +E+ +KLPAVQRKVKILGRLVPGC
Sbjct: 97  WSRAILASRFRQRLA-RRRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGC 156

Query: 136 RKVSLPNLLEETSDYLSALEMQVKAMAALVELLAGNQSN 164
           RKVS PNLLEET+DY+SALEMQV+AMAALVELLAG QSN
Sbjct: 157 RKVSFPNLLEETTDYISALEMQVRAMAALVELLAGAQSN 194

[Close]

BLAST of Sed0008162.1 vs. ExPASy Swiss-Prot
Match: O80482 (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 84/155 (54.19%), Postives = 107/155 (69.03%), Query Frame = 0


Query: 18  RKWRTEVEQQIYSSNLAEALRRRRSPMN--------------GRLVRETADSVLAAAAKG 77
           ++W+T   QQIY+  L EALRR R   +               R +R+TAD VLAA+A+G
Sbjct: 42  KRWKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARG 101

Query: 78  RTRWSRAILANRLRQRLARRRRRTGKSIGRKPPRAAEAERIR-KLPAVQRKVKILGRLVP 137
            TRWSRAILA+R+R +L ++ R+  KS G    R    E  R KLPAV+RK+KILGRLVP
Sbjct: 102 TTRWSRAILASRVRAKL-KKHRKAKKSTGNCKSRKGLTETNRIKLPAVERKLKILGRLVP 161

Query: 138 GCRKVSLPNLLEETSDYLSALEMQVKAMAALVELL 158
           GCRKVS+PNLL+E +DY++ALEMQV+AM AL ELL
Sbjct: 162 GCRKVSVPNLLDEATDYIAALEMQVRAMEALAELL 195

[Close]

BLAST of Sed0008162.1 vs. ExPASy Swiss-Prot
Match: Q9LSN7 (Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-25
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 19  KWRTEVEQQIYSSNLAEALRRRR------------SPMNGRLVRETADSVLAAAAKGRTR 78
           KWR+E +QQIYS+ L  ALR  R             P  GR VRE AD  LA AA+G+T 
Sbjct: 49  KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108

Query: 79  WSRAILANRLRQRLARRRRR----------TGKSIGRKPPRAAEAE-RIRKLPAVQRKVK 138
           WSRAIL+  ++ +  + +R+          T  SI  K  RA     + + LPAVQRKVK
Sbjct: 109 WSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVK 168

Query: 139 ILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVELLAGN 161
           +L RLVPGCRK SLP +LEET+DY++A+EMQ++ M A++  ++ +
Sbjct: 169 VLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Sed0008162.1 vs. ExPASy Swiss-Prot
Match: Q9M9L6 (Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.3e-24
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 18  RKWRTEVEQQIYSSNLAEALRRRRSPMNGRLVRETADSVLAAAAKGRTRWSRAILANRLR 77
           R+WR    Q++YS  L +AL+R R       VR+TAD VLA  A+G TRWSRAIL +R  
Sbjct: 61  RRWRATTAQKVYSLKLYDALQRSR---RSATVRDTADKVLATTARGATRWSRAILVSRFG 120

Query: 78  QRLARRRR-RTGKSIGRKPPRAAEAERIRKLPAVQRKVKILGRLVPGCRKVSLPNLLEET 137
             L RRR  +   ++      +  + R RKL AV  +V++LG LVPGCR+ +LP LL+ET
Sbjct: 121 TSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLVPGCRRTALPELLDET 180

Query: 138 SDYLSALEMQVKAMAALVELLA 159
           +DY++ALEMQV+AM AL ++L+
Sbjct: 181 ADYIAALEMQVRAMTALSKILS 199

[Close]

BLAST of Sed0008162.1 vs. ExPASy Swiss-Prot
Match: Q9C8Z9 (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-23
Identity = 72/166 (43.37%), Postives = 101/166 (60.84%), Query Frame = 0


Query: 19  KWRTEVEQQIYSSNLAEALRRRR------------SPMNGRLVRETADSVLAAAAKGRTR 78
           +WR+E +Q+IYS+ L +AL++ R            +   G+ VRE AD  LA +A+GRT 
Sbjct: 47  RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTL 106

Query: 79  WSRAILANRLRQRLARRRRR------------TGKSIGRKPPRAAEAERIRK--LPAVQR 138
           WSRAILANR++ +  ++RR                S  R   R     R+ K  +P V R
Sbjct: 107 WSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNR 166

Query: 139 KVKILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVELLA 159
           KV++LGRLVPGC K S+P +LEE +DY+ ALEMQV+AM +LV+LL+
Sbjct: 167 KVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]

BLAST of Sed0008162.1 vs. ExPASy Swiss-Prot
Match: Q01I07 (Transcription factor IBH1 OS=Oryza sativa subsp. indica OX=39946 GN=IBH1 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.5e-04
Identity = 45/135 (33.33%), Postives = 61/135 (45.19%), Query Frame = 0


Query: 47  RLVRETADSVLAAAAKGRTRWSRAILANRLRQRLARRRRRTGKSIGRK-------PPRAA 106
           R +R  A S +A AA  R  WSRA+L     +R     RR    + R+        P +A
Sbjct: 66  RTIRRAAYSSMARAASPRRAWSRALLGQARARRSRTLMRRAAVLVRRRVVAAPAPSPASA 125

Query: 107 EAERI----------RKLPAVQR------KVKILGRLVPGCRKVSLPNLLEETSDYLSAL 159
              RI          R +P   R      +   L RLVPG   +   +LLEET+DYL +L
Sbjct: 126 RGVRIIAAGETSAAARAVPPPPRQQGEPPRADALRRLVPGGAGMEYSSLLEETADYLRSL 185

[Close]

BLAST of Sed0008162.1 vs. ExPASy TrEMBL
Match: A0A6J1KCR3 (transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111493732 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.4e-52
Identity = 135/195 (69.23%), Postives = 147/195 (75.38%), Query Frame = 0


Query: 1   MEAEKSRKSRALLLL---------------QERKWRTEVEQQIYSSNLAEALRR------ 60
           M+AE+S+ SR  L                 +ER+WRTEVEQQIYSS LAEAL+R      
Sbjct: 1   MDAEESKNSRRSLQKPNKRLQIASNVSAEGRERRWRTEVEQQIYSSRLAEALQRVSRQRS 60

Query: 61  ---RRSPMNGRLVRETADSVLAAAAKGRTRWSRAILANRLRQRLARRRRRTGKSIGRKPP 120
               RS +NGRLVRETAD VLAAAAKGRTRWSRAILANR RQRLA RRRRT KSIGRKP 
Sbjct: 61  SPHARSTINGRLVRETADCVLAAAAKGRTRWSRAILANRFRQRLA-RRRRTKKSIGRKPS 120

Query: 121 RAAEAERIRKLPAVQRKVKILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVEL 172
           R  E +  RKLPAVQRKVKILGRLVPGCRK+S PNLLEE +DY+SALEMQVKAMAAL E+
Sbjct: 121 RVEEVKN-RKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMAALAEI 180

[Close]

BLAST of Sed0008162.1 vs. ExPASy TrEMBL
Match: A0A6J1G430 (transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111450552 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.5e-52
Identity = 127/165 (76.97%), Postives = 137/165 (83.03%), Query Frame = 0


Query: 16  QERKWRTEVEQQIYSSNLAEALRR---------RRSPMNGRLVRETADSVLAAAAKGRTR 75
           +ER+WRTEVEQQIYSS LAEAL+R          RS +NGRLVRETAD VLAAAAKGRTR
Sbjct: 31  RERRWRTEVEQQIYSSRLAEALQRVGRLPSSPHARSTINGRLVRETADCVLAAAAKGRTR 90

Query: 76  WSRAILANRLRQRLARRRRRTGKSIGRKPPRAAEAERIRKLPAVQRKVKILGRLVPGCRK 135
           WSRAILANR RQRLA RRRRT KSIGRKP R AE +  RKLPAVQRKV+ILGRLVPGCRK
Sbjct: 91  WSRAILANRFRQRLA-RRRRTKKSIGRKPSRVAEVKN-RKLPAVQRKVRILGRLVPGCRK 150

Query: 136 VSLPNLLEETSDYLSALEMQVKAMAALVELLAGNQSNLHGISNDS 172
           +S PNLLEE +DY+SALEMQVKAMAAL E+LAG Q NL  ISNDS
Sbjct: 151 LSFPNLLEEATDYISALEMQVKAMAALAEILAGAQRNLLPISNDS 193

[Close]

BLAST of Sed0008162.1 vs. ExPASy TrEMBL
Match: A0A6J1HQH2 (transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111465681 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.4e-50
Identity = 133/188 (70.74%), Postives = 146/188 (77.66%), Query Frame = 0


Query: 2   EAEKSRKSRALLLL---------------QERKWRTEVEQQIYSSNLAEALR---RRR-- 61
           +AE+S+ SR LL                 +ERKWRTEVEQQIYSS L EA+R   RRR  
Sbjct: 8   DAEESKNSRRLLQKPNKRRKIAFDVGAKGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSS 67

Query: 62  ----SPMNGRLVRETADSVLAAAAKGRTRWSRAILANRLRQRLARRRRRTGKSIGRKPPR 121
               SP+NGRLVRETAD VLAAAAKGRTRWSRAILA+R RQRLA RRRRT K IGRKP R
Sbjct: 68  AQAGSPINGRLVRETADCVLAAAAKGRTRWSRAILASRFRQRLA-RRRRTKKLIGRKPSR 127

Query: 122 AAE--AERIRKLPAVQRKVKILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVE 164
            AE  +E+ +KLPAVQRKVKILGRLVPGCRKVS PNLLEET+DY+SALEMQV+AMAALVE
Sbjct: 128 IAETKSEKNKKLPAVQRKVKILGRLVPGCRKVSFPNLLEETTDYISALEMQVRAMAALVE 187

[Close]

BLAST of Sed0008162.1 vs. ExPASy TrEMBL
Match: A0A6J1FBF1 (transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111444091 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.4e-50
Identity = 126/159 (79.25%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 16  QERKWRTEVEQQIYSSNLAEALR---RRR------SPMNGRLVRETADSVLAAAAKGRTR 75
           +ERKWRTEVEQQIYSS L EA+R   RRR      SP+NGRLVRETAD VLAAAAKGRTR
Sbjct: 37  RERKWRTEVEQQIYSSKLVEAIRHVSRRRSSAQAGSPINGRLVRETADCVLAAAAKGRTR 96

Query: 76  WSRAILANRLRQRLARRRRRTGKSIGRKPPRAAE--AERIRKLPAVQRKVKILGRLVPGC 135
           WSRAILA+R RQRLA RRRRT K IGRKP R AE  +E+ +KLPAVQRKVKILGRLVPGC
Sbjct: 97  WSRAILASRFRQRLA-RRRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGC 156

Query: 136 RKVSLPNLLEETSDYLSALEMQVKAMAALVELLAGNQSN 164
           RKVS PNLLEET+DY+SALEMQV+AMAALVELLAG QSN
Sbjct: 157 RKVSFPNLLEETTDYISALEMQVRAMAALVELLAGAQSN 194

[Close]

BLAST of Sed0008162.1 vs. ExPASy TrEMBL
Match: A0A5A7TYM9 (Transcription factor bHLH149-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001010 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.9e-48
Identity = 115/160 (71.88%), Postives = 129/160 (80.62%), Query Frame = 0


Query: 17  ERKWRTEVEQQIYSSNLAEALRRRRSP-----MNGRLVRETADSVLAAAAKGRTRWSRAI 76
           +  W+TE++QQIYSS LAEALRR   P     +NG LVR+TADSVLAA AKGR+RWSRAI
Sbjct: 31  QHTWKTEIQQQIYSSRLAEALRRVTHPRSSSTINGNLVRQTADSVLAATAKGRSRWSRAI 90

Query: 77  LANRLRQRLARRRRRTGKSIGRKPPRAAEAERIRKLPAVQRKVKILGRLVPGCRKVSLPN 136
           LA R RQ LARRRRRT K + RKP    + E+ RKLPAVQRKVKILGRLVPGCRK+S PN
Sbjct: 91  LATRFRQSLARRRRRTKKLLARKP--ELKNEKARKLPAVQRKVKILGRLVPGCRKLSFPN 150

Query: 137 LLEETSDYLSALEMQVKAMAALVELLAGNQSNLHGISNDS 172
           LLEE +DY+SALEMQVKAM AL ELLAGNQ N+ GISNDS
Sbjct: 151 LLEEATDYISALEMQVKAMTALAELLAGNQRNIAGISNDS 188

[Close]

BLAST of Sed0008162.1 vs. TAIR 10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 84/155 (54.19%), Postives = 107/155 (69.03%), Query Frame = 0


Query: 18  RKWRTEVEQQIYSSNLAEALRRRRSPMN--------------GRLVRETADSVLAAAAKG 77
           ++W+T   QQIY+  L EALRR R   +               R +R+TAD VLAA+A+G
Sbjct: 42  KRWKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARG 101

Query: 78  RTRWSRAILANRLRQRLARRRRRTGKSIGRKPPRAAEAERIR-KLPAVQRKVKILGRLVP 137
            TRWSRAILA+R+R +L ++ R+  KS G    R    E  R KLPAV+RK+KILGRLVP
Sbjct: 102 TTRWSRAILASRVRAKL-KKHRKAKKSTGNCKSRKGLTETNRIKLPAVERKLKILGRLVP 161

Query: 138 GCRKVSLPNLLEETSDYLSALEMQVKAMAALVELL 158
           GCRKVS+PNLL+E +DY++ALEMQV+AM AL ELL
Sbjct: 162 GCRKVSVPNLLDEATDYIAALEMQVRAMEALAELL 195

[Close]

BLAST of Sed0008162.1 vs. TAIR 10
Match: AT3G17100.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-26
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 19  KWRTEVEQQIYSSNLAEALRRRR------------SPMNGRLVRETADSVLAAAAKGRTR 78
           KWR+E +QQIYS+ L  ALR  R             P  GR VRE AD  LA AA+G+T 
Sbjct: 49  KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108

Query: 79  WSRAILANRLRQRLARRRRR----------TGKSIGRKPPRAAEAE-RIRKLPAVQRKVK 138
           WSRAIL+  ++ +  + +R+          T  SI  K  RA     + + LPAVQRKVK
Sbjct: 109 WSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVK 168

Query: 139 ILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVELLAGN 161
           +L RLVPGCRK SLP +LEET+DY++A+EMQ++ M A++  ++ +
Sbjct: 169 VLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Sed0008162.1 vs. TAIR 10
Match: AT3G17100.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-26
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 19  KWRTEVEQQIYSSNLAEALRRRR------------SPMNGRLVRETADSVLAAAAKGRTR 78
           KWR+E +QQIYS+ L  ALR  R             P  GR VRE AD  LA AA+G+T 
Sbjct: 49  KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108

Query: 79  WSRAILANRLRQRLARRRRR----------TGKSIGRKPPRAAEAE-RIRKLPAVQRKVK 138
           WSRAIL+  ++ +  + +R+          T  SI  K  RA     + + LPAVQRKVK
Sbjct: 109 WSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVK 168

Query: 139 ILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVELLAGN 161
           +L RLVPGCRK SLP +LEET+DY++A+EMQ++ M A++  ++ +
Sbjct: 169 VLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Sed0008162.1 vs. TAIR 10
Match: AT3G05800.1 (AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 )

HSP 1 Score: 111.7 bits (278), Expect = 5.9e-25
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 18  RKWRTEVEQQIYSSNLAEALRRRRSPMNGRLVRETADSVLAAAAKGRTRWSRAILANRLR 77
           R+WR    Q++YS  L +AL+R R       VR+TAD VLA  A+G TRWSRAIL +R  
Sbjct: 61  RRWRATTAQKVYSLKLYDALQRSR---RSATVRDTADKVLATTARGATRWSRAILVSRFG 120

Query: 78  QRLARRRR-RTGKSIGRKPPRAAEAERIRKLPAVQRKVKILGRLVPGCRKVSLPNLLEET 137
             L RRR  +   ++      +  + R RKL AV  +V++LG LVPGCR+ +LP LL+ET
Sbjct: 121 TSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLVPGCRRTALPELLDET 180

Query: 138 SDYLSALEMQVKAMAALVELLA 159
           +DY++ALEMQV+AM AL ++L+
Sbjct: 181 ADYIAALEMQVRAMTALSKILS 199

[Close]

BLAST of Sed0008162.1 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 72/166 (43.37%), Postives = 101/166 (60.84%), Query Frame = 0


Query: 19  KWRTEVEQQIYSSNLAEALRRRR------------SPMNGRLVRETADSVLAAAAKGRTR 78
           +WR+E +Q+IYS+ L +AL++ R            +   G+ VRE AD  LA +A+GRT 
Sbjct: 47  RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTL 106

Query: 79  WSRAILANRLRQRLARRRRR------------TGKSIGRKPPRAAEAERIRK--LPAVQR 138
           WSRAILANR++ +  ++RR                S  R   R     R+ K  +P V R
Sbjct: 107 WSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNR 166

Query: 139 KVKILGRLVPGCRKVSLPNLLEETSDYLSALEMQVKAMAALVELLA 159
           KV++LGRLVPGC K S+P +LEE +DY+ ALEMQV+AM +LV+LL+
Sbjct: 167 KVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

The following BLAST results are available for this feature:

BLAST of Sed0008162.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890546.1	7.4e-54	70.05	transcription factor bHLH149 [Benincasa hispida]	[more]
XP_023545324.1	1.8e-52	78.18	transcription factor bHLH149-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999326.1	9.1e-52	69.23	transcription factor bHLH149-like [Cucurbita maxima]	[more]
XP_022946515.1	1.5e-51	76.97	transcription factor bHLH149-like [Cucurbita moschata] >KAG6599177.1 Transcripti...	[more]
XP_022937811.1	2.9e-50	79.25	transcription factor bHLH149-like [Cucurbita moschata]	[more]

BLAST of Sed0008162.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80482	2.0e-30	54.19	Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=...	[more]
Q9LSN7	4.4e-25	44.85	Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=...	[more]
Q9M9L6	8.3e-24	47.89	Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=...	[more]
Q9C8Z9	1.4e-23	43.37	Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=...	[more]
Q01I07	9.5e-04	33.33	Transcription factor IBH1 OS=Oryza sativa subsp. indica OX=39946 GN=IBH1 PE=3 SV...	[more]

BLAST of Sed0008162.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KCR3	4.4e-52	69.23	transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111493732 PE...	[more]
A0A6J1G430	7.5e-52	76.97	transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111450552 ...	[more]
A0A6J1HQH2	1.4e-50	70.74	transcription factor bHLH149-like OS=Cucurbita maxima OX=3661 GN=LOC111465681 PE...	[more]
A0A6J1FBF1	1.4e-50	79.25	transcription factor bHLH149-like OS=Cucurbita moschata OX=3662 GN=LOC111444091 ...	[more]
A0A5A7TYM9	2.9e-48	71.88	Transcription factor bHLH149-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Sed0008162.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09250.1	1.4e-31	54.19	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G17100.1	3.1e-26	44.85	sequence-specific DNA binding transcription factors	[more]
AT3G17100.2	3.1e-26	44.85	sequence-specific DNA binding transcription factors	[more]
AT3G05800.1	5.9e-25	47.89	AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1	[more]
AT3G06590.1	1.0e-24	43.37	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF69	TRANSCRIPTION FACTOR BHLH149	coord: 15..162
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 15..162
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 105..154 e-value: 2.36879E-14 score: 62.2548
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 108..162

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0008162	Sed0008162	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008162.1-five_prime_utr	Sed0008162.1-five_prime_utr-LG11:4051328..4051472	five_prime_UTR
Sed0008162.1-five_prime_utr	Sed0008162.1-five_prime_utr-LG11:4051652..4051699	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008162.1-exon	Sed0008162.1-exon-LG11:4051328..4051472	exon
Sed0008162.1-exon	Sed0008162.1-exon-LG11:4051652..4052366	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008162.1-cds	Sed0008162.1-cds-LG11:4051700..4052215	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008162.1-three_prime_utr	Sed0008162.1-three_prime_utr-LG11:4052216..4052366	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0008162.1	Sed0008162.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000976	transcription cis-regulatory region binding