Sed0008092.1 (mRNA) Chayote v1

Overview


Name	Sed0008092.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	PMD domain-containing protein
Location	LG02: 35201221 .. 35202417 (-)
Sequence length	846
RNA-Seq Expression	Sed0008092.1
Synteny	Sed0008092.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTGGCTAACCCTTTTTTTTGTAGGATCATTGTGCATTTTTTCGAACGCGTTACCTCTAGGTTGAAGTATTTGGTGATTTTGAAGGATAAAGAGCAATCAATTAAGGATGGACTGTCTTTACCTATTGAAGAGCCCTTAGCTAGTACTCTTTCCCCTACATGGCAACACCTGAATGTCAAGTTTATGTCTGAACTATCAAGAGAGTTACCTTTTGAAGGCAATGATAAAGTTTGGGTCTTAAAATCTTCAGTGCATGGTCGAAATTATAATGAAGACTCTGAACTAACATTAGGGCGTCGCTTGATCGAAGGTGAAACTCATTGGAATACCATTATTAAGATTCATGGTGATTGGTCTTTCATTGATTTTTATTGGGAGTGGCTAGAATTTGTCGTTGGTCGTAATGAGAAAGTGCTTAACCAGAATTGCTTACGTAATGTGGTGATGGCTTCTCTCTATACTTATGATCATTGTAATGATGTGGTTCGTGCTTTCTGTGAAGGTTGGTGCCTCCGGACGAATACCCTTTTTACCGCAATGGGTGAAGTCTCTATCTCGCTATGGGATTTATGGGATATTTGTGGTCTTCCTATCAAAGGAAGATTTTATGAGGAGGTTATTCCGACTTTGCAAGAGCTGACGGAATATCGAGGTAACTATAAGGTTCTCCCTAAAAGTTGTGAACACCTATTCCACGCATATTATAAGATAGCCACCTTGGGAGCTGAATGTGTGTCTTCTTCAAAAGTCGTATTTGTTAGCTCTTGGAACGCATTTTGGTTTAAAGACGTTAAAAGATACAAAAGACCTACTGGACGGTAAAAAAGGAAAACTTCTCGAGCTCCATCAACCCAAAATCCAGACGGGACCAAAATCAAGTATCGTGCCTAGACGAGCTGTGAAAATAAGATGTTCCATGATCTTGATGTAGATGAAGACTGGTGCGATAAGACTTATTTGGCAGCCTTCTTATCTTGTTGGTTGTGCGTTTTTGTTTTTCCTAGAAAGAAACCTCAAGTTATCCAGCCTGGAGTGTTTAGAATTGCTAGCCAAATGGCTGAGGGTCACGTCTTTAGCCTTGCTGTCCCAGCCTTAGCTAACTTATACCAGGGATTAGGTATAATCACTTGGGCTTCTAACCCGATCGGACGTGTAGACGTTTGTTTGCCTATGCATTTCATTCATGGATGA

mRNA sequence

ATGATTTTGGCTAACCCTTTTTTTTGTAGGATCATTGTGCATTTTTTCGAACGCGTTACCTCTAGGTTGAAGTATTTGGTGATTTTGAAGGATAAAGAGCAATCAATTAAGGATGGACTGTCTTTACCTATTGAAGAGCCCTTAGCTAGTACTCTTTCCCCTACATGGCAACACCTGAATGTCAAGTTTATGTCTGAACTATCAAGAGAGTTACCTTTTGAAGGCAATGATAAAGTTTGGGTCTTAAAATCTTCAGTGCATGGTCGAAATTATAATGAAGACTCTGAACTAACATTAGGGCGTCGCTTGATCGAAGGTGAAACTCATTGGAATACCATTATTAAGATTCATGGTGATTGGTCTTTCATTGATTTTTATTGGGAGTGGCTAGAATTTGTCGTTGGTCGTAATGAGAAAGTGCTTAACCAGAATTGCTTACGTAATGTGGTGATGGCTTCTCTCTATACTTATGATCATTGTAATGATGTGGTTCGTGCTTTCTGTGAAGGTTGGTGCCTCCGGACGAATACCCTTTTTACCGCAATGGGTGAAGTCTCTATCTCGCTATGGGATTTATGGGATATTTATGAAGACTGGTGCGATAAGACTTATTTGGCAGCCTTCTTATCTTGTTGGTTGTGCGTTTTTGTTTTTCCTAGAAAGAAACCTCAAGTTATCCAGCCTGGAGTGTTTAGAATTGCTAGCCAAATGGCTGAGGGTCACGTCTTTAGCCTTGCTGTCCCAGCCTTAGCTAACTTATACCAGGGATTAGGTATAATCACTTGGGCTTCTAACCCGATCGGACGTGTAGACGTTTGTTTGCCTATGCATTTCATTCATGGATGA

Coding sequence (CDS)

ATGATTTTGGCTAACCCTTTTTTTTGTAGGATCATTGTGCATTTTTTCGAACGCGTTACCTCTAGGTTGAAGTATTTGGTGATTTTGAAGGATAAAGAGCAATCAATTAAGGATGGACTGTCTTTACCTATTGAAGAGCCCTTAGCTAGTACTCTTTCCCCTACATGGCAACACCTGAATGTCAAGTTTATGTCTGAACTATCAAGAGAGTTACCTTTTGAAGGCAATGATAAAGTTTGGGTCTTAAAATCTTCAGTGCATGGTCGAAATTATAATGAAGACTCTGAACTAACATTAGGGCGTCGCTTGATCGAAGGTGAAACTCATTGGAATACCATTATTAAGATTCATGGTGATTGGTCTTTCATTGATTTTTATTGGGAGTGGCTAGAATTTGTCGTTGGTCGTAATGAGAAAGTGCTTAACCAGAATTGCTTACGTAATGTGGTGATGGCTTCTCTCTATACTTATGATCATTGTAATGATGTGGTTCGTGCTTTCTGTGAAGGTTGGTGCCTCCGGACGAATACCCTTTTTACCGCAATGGGTGAAGTCTCTATCTCGCTATGGGATTTATGGGATATTTATGAAGACTGGTGCGATAAGACTTATTTGGCAGCCTTCTTATCTTGTTGGTTGTGCGTTTTTGTTTTTCCTAGAAAGAAACCTCAAGTTATCCAGCCTGGAGTGTTTAGAATTGCTAGCCAAATGGCTGAGGGTCACGTCTTTAGCCTTGCTGTCCCAGCCTTAGCTAACTTATACCAGGGATTAGGTATAATCACTTGGGCTTCTAACCCGATCGGACGTGTAGACGTTTGTTTGCCTATGCATTTCATTCATGGATGA

Protein sequence

MILANPFFCRIIVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHLNVKFMSELSRELPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWLEFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLWDLWDIYEDWCDKTYLAAFLSCWLCVFVFPRKKPQVIQPGVFRIASQMAEGHVFSLAVPALANLYQGLGIITWASNPIGRVDVCLPMHFIHG

Homology

[Close]

BLAST of Sed0008092.1 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-68
Identity = 152/360 (42.22%), Postives = 190/360 (52.78%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  LS E
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFANHWPRLDNNSVLPRLSVE 60

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +        WVL+SS+H    N    LTLG+RLIEG+T W T+ K+ G++ FID YWEWL
Sbjct: 61  VHLSEGKSAWVLQSSIHIEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFIDCYWEWL 120

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVGRN ++L    L   V ASLYTYD  +DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDCNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

Query: 192 DLWD-------------------------------------------------------- 251
           DLW                                                         
Sbjct: 181 DLWSFGGLPIKGAYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQK 240

Query: 252 ---------------------------------IYEDWCDKTYLAAFLSCWLCVFVFPRK 282
                                            I +D  D+TYLAAFLSCWLC+FVFP +
Sbjct: 241 KASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFP-Q 300

[Close]

BLAST of Sed0008092.1 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-68
Identity = 152/360 (42.22%), Postives = 190/360 (52.78%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  LS E
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFANHWPRLDNNSVLPRLSVE 60

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +        WVL+SS+H    N    LTLG+RLIEG+T W T+ K+ G++ FID YWEWL
Sbjct: 61  VHLSEGKSAWVLQSSIHIEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFIDCYWEWL 120

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVGRN ++L    L   V ASLYTYD  +DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDCNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

Query: 192 DLWD-------------------------------------------------------- 251
           DLW                                                         
Sbjct: 181 DLWSFGGLPIKGAYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQK 240

Query: 252 ---------------------------------IYEDWCDKTYLAAFLSCWLCVFVFPRK 282
                                            I +D  D+TYLAAFLSCWLC+FVFP +
Sbjct: 241 KASRSKSTQNPNGSKIQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFP-Q 300

[Close]

BLAST of Sed0008092.1 vs. NCBI nr
Match: KAA0060611.1 (hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 8.7e-68
Identity = 151/357 (42.30%), Postives = 188/357 (52.66%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  L  E
Sbjct: 16  MVYFTERFLSGVRHLVILSDRNQLREDGLSLIVEKPWAGAFADHWSRLDNNSVLPRLFVE 75

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +P       WVL+SS+H    N    LTLG+RLIEG+T W T+IK+ G++ F D YWEWL
Sbjct: 76  VPLSEEKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVIKVPGEFCFTDCYWEWL 135

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVG+N ++L    L   V ASLYTYD   DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 136 ELVVGQNSRLLYSTHLYGTVTASLYTYDRNGDVVRAFCEAWCPSTNTLHTMAGELSISLW 195

Query: 192 DLW---------DIYE-------------------------------------------- 251
           DLW         D YE                                            
Sbjct: 196 DLWSFGGLPIKGDFYEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIPITRKQKKAS 255

Query: 252 ---------------------------------DWCDKTYLAAFLSCWLCVFVFPRKKPQ 282
                                            D  D+TYLAAFLSCWLC+FVFP +K  
Sbjct: 256 RSKSTQNPDGSKIQAREWSSRESMLFAELGIKDDLKDETYLAAFLSCWLCLFVFP-QKGS 315

[Close]

BLAST of Sed0008092.1 vs. NCBI nr
Match: TYK02261.1 (hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 5.6e-67
Identity = 150/357 (42.02%), Postives = 187/357 (52.38%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  L  E
Sbjct: 16  MVYFTERFLSGVRHLVILSDRNQLREDGLSLIVEKPWAGAFADHWSRLDNNSVLPRLFVE 75

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +P       WVL+SS+H    N    LTLG+RLIEG+T W T+IK+ G++ F D YWEWL
Sbjct: 76  VPLSEEKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVIKVPGEFCFTDCYWEWL 135

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVG+N ++L    L   V ASLYTYD   DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 136 ELVVGQNSRLLYSTHLYGTVTASLYTYDRNGDVVRAFCEAWCPSTNTLHTMAGELSISLW 195

Query: 192 DLW---------DIYE-------------------------------------------- 251
           DLW         D YE                                            
Sbjct: 196 DLWSFGGLPIKGDFYEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIPITRKQKKAS 255

Query: 252 ---------------------------------DWCDKTYLAAFLSCWLCVFVFPRKKPQ 282
                                            D  D+TYLAAFLSCWLC+FVFP +K  
Sbjct: 256 RSKSTQNPDGSKIQAREWSSRESMLFAELGIKDDLKDETYLAAFLSCWLCLFVFP-QKGS 315

[Close]

BLAST of Sed0008092.1 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 7.6e-64
Identity = 150/393 (38.17%), Postives = 187/393 (47.58%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  LS E
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +P       W+L+SS+H    N    LTLG+RLIEG+T W T+ K+  ++ F D YWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHHEAPNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWL 120

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVGRN ++L    L   V ASLYTYD  +DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

Query: 192 DLW---------DIYE-------------------------------------------- 251
           DLW         D YE                                            
Sbjct: 181 DLWSFGGLPIKGDFYEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRNDRST 240

Query: 252 ------------------------------------------------------------ 282
                                                                       
Sbjct: 241 SSKNDSQVTIGSWISFWYLGTRSYDKPTTRKQKNASRSKSTQNPDGSKIQAREWSSRESM 300

[Close]

BLAST of Sed0008092.1 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 6.5e-69
Identity = 152/360 (42.22%), Postives = 190/360 (52.78%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  LS E
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFANHWPRLDNNSVLPRLSVE 60

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +        WVL+SS+H    N    LTLG+RLIEG+T W T+ K+ G++ FID YWEWL
Sbjct: 61  VHLSEGKSAWVLQSSIHIEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFIDCYWEWL 120

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVGRN ++L    L   V ASLYTYD  +DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDCNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

Query: 192 DLWD-------------------------------------------------------- 251
           DLW                                                         
Sbjct: 181 DLWSFGGLPIKGAYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQK 240

Query: 252 ---------------------------------IYEDWCDKTYLAAFLSCWLCVFVFPRK 282
                                            I +D  D+TYLAAFLSCWLC+FVFP +
Sbjct: 241 KASRSKSTQNPNGSKIQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFP-Q 300

[Close]

BLAST of Sed0008092.1 vs. ExPASy TrEMBL
Match: A0A5D3DCE5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18270G00010 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 6.5e-69
Identity = 152/360 (42.22%), Postives = 190/360 (52.78%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  LS E
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFANHWPRLDNNSVLPRLSVE 60

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +        WVL+SS+H    N    LTLG+RLIEG+T W T+ K+ G++ FID YWEWL
Sbjct: 61  VHLSEGKSAWVLQSSIHIEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFIDCYWEWL 120

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVGRN ++L    L   V ASLYTYD  +DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDCNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

Query: 192 DLWD-------------------------------------------------------- 251
           DLW                                                         
Sbjct: 181 DLWSFGGLPIKGAYYSIVCTQRNDRSASSKNDSQVTIGSWISFWYLGSKSYDKPTTRKQK 240

Query: 252 ---------------------------------IYEDWCDKTYLAAFLSCWLCVFVFPRK 282
                                            I +D  D+TYLAAFLSCWLC+FVFP +
Sbjct: 241 KASRSKSTQNPDGSKIQAREWSSRESMLFAELGIRDDLKDETYLAAFLSCWLCLFVFP-Q 300

[Close]

BLAST of Sed0008092.1 vs. ExPASy TrEMBL
Match: A0A5A7V4F4 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004890 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 4.2e-68
Identity = 151/357 (42.30%), Postives = 188/357 (52.66%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  L  E
Sbjct: 16  MVYFTERFLSGVRHLVILSDRNQLREDGLSLIVEKPWAGAFADHWSRLDNNSVLPRLFVE 75

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +P       WVL+SS+H    N    LTLG+RLIEG+T W T+IK+ G++ F D YWEWL
Sbjct: 76  VPLSEEKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVIKVPGEFCFTDCYWEWL 135

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVG+N ++L    L   V ASLYTYD   DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 136 ELVVGQNSRLLYSTHLYGTVTASLYTYDRNGDVVRAFCEAWCPSTNTLHTMAGELSISLW 195

Query: 192 DLW---------DIYE-------------------------------------------- 251
           DLW         D YE                                            
Sbjct: 196 DLWSFGGLPIKGDFYEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIPITRKQKKAS 255

Query: 252 ---------------------------------DWCDKTYLAAFLSCWLCVFVFPRKKPQ 282
                                            D  D+TYLAAFLSCWLC+FVFP +K  
Sbjct: 256 RSKSTQNPDGSKIQAREWSSRESMLFAELGIKDDLKDETYLAAFLSCWLCLFVFP-QKGS 315

[Close]

BLAST of Sed0008092.1 vs. ExPASy TrEMBL
Match: A0A5D3BRA8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00620 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.7e-67
Identity = 150/357 (42.02%), Postives = 187/357 (52.38%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  L  E
Sbjct: 16  MVYFTERFLSGVRHLVILSDRNQLREDGLSLIVEKPWAGAFADHWSRLDNNSVLPRLFVE 75

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +P       WVL+SS+H    N    LTLG+RLIEG+T W T+IK+ G++ F D YWEWL
Sbjct: 76  VPLSEEKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVIKVPGEFCFTDCYWEWL 135

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVG+N ++L    L   V ASLYTYD   DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 136 ELVVGQNSRLLYSTHLYGTVTASLYTYDRNGDVVRAFCEAWCPSTNTLHTMAGELSISLW 195

Query: 192 DLW---------DIYE-------------------------------------------- 251
           DLW         D YE                                            
Sbjct: 196 DLWSFGGLPIKGDFYEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIPITRKQKKAS 255

Query: 252 ---------------------------------DWCDKTYLAAFLSCWLCVFVFPRKKPQ 282
                                            D  D+TYLAAFLSCWLC+FVFP +K  
Sbjct: 256 RSKSTQNPDGSKIQAREWSSRESMLFAELGIKDDLKDETYLAAFLSCWLCLFVFP-QKGS 315

[Close]

BLAST of Sed0008092.1 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 3.7e-64
Identity = 150/393 (38.17%), Postives = 187/393 (47.58%), Query Frame = 0


Query: 12  IVHFFERVTSRLKYLVILKDKEQSIKDGLSLPIEEPLASTLSPTWQHL-NVKFMSELSRE 71
           +V+F ER  S +++LVIL D+ Q  +DGLSL +E+P A   +  W  L N   +  LS E
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 72  LPFEGNDKVWVLKSSVHGRNYNEDSELTLGRRLIEGETHWNTIIKIHGDWSFIDFYWEWL 131
           +P       W+L+SS+H    N    LTLG+RLIEG+T W T+ K+  ++ F D YWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHHEAPNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWL 120

Query: 132 EFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTLFTAMGEVSISLW 191
           E VVGRN ++L    L   V ASLYTYD  +DVVRAFCE WC  TNTL T  GE+SISLW
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

Query: 192 DLW---------DIYE-------------------------------------------- 251
           DLW         D YE                                            
Sbjct: 181 DLWSFGGLPIKGDFYEERIPSFKELTSTSRDKTKCLPTTCQYLFQAYYSIVCTQRNDRST 240

Query: 252 ------------------------------------------------------------ 282
                                                                       
Sbjct: 241 SSKNDSQVTIGSWISFWYLGTRSYDKPTTRKQKNASRSKSTQNPDGSKIQAREWSSRESM 300

[Close]

BLAST of Sed0008092.1 vs. TAIR 10
Match: AT1G32120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-05
Identity = 41/191 (21.47%), Postives = 72/191 (37.70%), Query Frame = 0


Query: 120 WSFIDFYW-EWLEFVVGRNEKVLNQNCLRNVVMASLYTYDHCNDVVRAFCEGWCLRTNTL 179
           W      W EW+  +   +  V  ++ + + ++AS Y     +D++ A  E WC+ TNT 
Sbjct: 77  WGTPSLNWIEWVNVMAKSHATVWKKSGVYDAILASRYQIKRHDDLIVALVEKWCIETNTF 136

Query: 180 FTAMGEVSISLWDL-------------------------------------WDIYEDWCD 239
               GE +++L D+                                       + +  C 
Sbjct: 137 VFPWGEATLTLEDMIVLGGLSVTGNNALAPVKRDGMKEVEEKMKEAKRYIEVSLEKKCCV 196

Query: 240 KTYL------------AAFLSCWLCVFVFPRKKPQVIQPGVFRIASQMAEGHVFSLAVPA 261
             ++             AF+  WL  FVF      V++  +F  A Q+A+G   +LA   
Sbjct: 197 SMWMKEMMNSGNEIEHEAFMVSWLSRFVF-TNSGDVLREKLFPAAVQLAKGVRLALAPAV 256

The following BLAST results are available for this feature:

BLAST of Sed0008092.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20969.1	1.3e-68	42.22	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]
KAA0052363.1	1.3e-68	42.22	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]
KAA0060611.1	8.7e-68	42.30	hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]	[more]
TYK02261.1	5.6e-67	42.02	hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]	[more]
KAA0065375.1	7.6e-64	38.17	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0008092.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008092.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8X8	6.5e-69	42.22	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DCE5	6.5e-69	42.22	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7V4F4	4.2e-68	42.30	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BRA8	2.7e-67	42.02	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VHW8	3.7e-64	38.17	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Sed0008092.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32120.1	1.3e-05	21.47	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019557	Aminotransferase-like, plant mobile domain	PFAM	PF10536	PMD	coord: 206..277 e-value: 5.4E-10 score: 39.0
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 203..279
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 78..195
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 203..279
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 78..195

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0008092	Sed0008092	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008092.1-exon	Sed0008092.1-exon-LG02:35201221..35201480	exon
Sed0008092.1-exon	Sed0008092.1-exon-LG02:35201832..35202417	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0008092.1-cds	Sed0008092.1-cds-LG02:35201221..35201480	CDS
Sed0008092.1-cds	Sed0008092.1-cds-LG02:35201832..35202417	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0008092.1	Sed0008092.1-protein	polypeptide