Sed0007892.1 (mRNA) Chayote v1

Overview


Name	Sed0007892.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Poly(A)-specific ribonuclease
Location	LG01: 2036246 .. 2037169 (+)
Sequence length	924
RNA-Seq Expression	Sed0007892.1
Synteny	Sed0007892.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGAATAAATCAAGAGCCGAGGGGTGATAACAAAAAAATTCGACAAGTTTGGGCTTATAATTTTGCCTACGAAATTTCCCGCCTCGACCGTTGTGTTCGATTTCACAACATTCTCTCCATCGCCACTAAATTTTCAGGATTTATCAAGCAAACTCCGTGCGGATCGATCGACGAACAACTCTACGCAGATTTTCGATTTAATGTTAACCAAACCAAGCTGATTCAAATGGGGTTGACAGCTATGGATGAATCAGGGAACATCAGCGGGTCATGGGAGTTCAACTTCGATACGGAAACCGATACGCACAATGTGTCGTCGATTACGTTTCTAAACGATCACGAGCTGGATTTTGACAAGTTAAAGCAAGAAAGAATTTCGGTGAGCTTATTTGCACGAAAATTCCTACCGATTGTTCGAAAGAATGAGATATACAGATGGGTCACATTCCACGGATTATATGATATCGGGTATCTTTTAAAGGCGATGGGCGTAATCGAGAAGTTGCCCGAATCAATGGAAGAATTTGCTGGGATAGTTGTGAAAGAAGTTGGTATAGTGAGGCACTTGAAGCACACGTCAATATTCTGTGAAGAACTTCAACCGGAGAAGTTAGGACTTGAAAGATTGGACCAATTATTGTTGAATAAAAAACGGTTTGGATCGAAGCATGATGCGGGATCGGATAGTTTATTAATGGCTATGCTTCACGAAAAGGTGTTCGAATGTTTCGATATCGAGCCTGAAACCTGCAATGGATTTTTGTATGGCTTCTCTGATAAATTGGAGGAGTTGATGGACATGAAAATCAAGTTGCATCAAAACCAGAAATTTAGATTGGTTCACCAAATTCCAGGTTTATTTAGGGGCCATGTTACTTGCATTATTTTTATTTTATTTTTATTTTATTTTATTTTTTAG

mRNA sequence

ATGGGTGGAATAAATCAAGAGCCGAGGGGTGATAACAAAAAAATTCGACAAGTTTGGGCTTATAATTTTGCCTACGAAATTTCCCGCCTCGACCGTTGTGTTCGATTTCACAACATTCTCTCCATCGCCACTAAATTTTCAGGATTTATCAAGCAAACTCCGTGCGGATCGATCGACGAACAACTCTACGCAGATTTTCGATTTAATGTTAACCAAACCAAGCTGATTCAAATGGGGTTGACAGCTATGGATGAATCAGGGAACATCAGCGGGTCATGGGAGTTCAACTTCGATACGGAAACCGATACGCACAATGTGTCGTCGATTACGTTTCTAAACGATCACGAGCTGGATTTTGACAAGTTAAAGCAAGAAAGAATTTCGGTGAGCTTATTTGCACGAAAATTCCTACCGATTGTTCGAAAGAATGAGATATACAGATGGGTCACATTCCACGGATTATATGATATCGGGTATCTTTTAAAGGCGATGGGCGTAATCGAGAAGTTGCCCGAATCAATGGAAGAATTTGCTGGGATAGTTGTGAAAGAAGTTGGTATAGTGAGGCACTTGAAGCACACGTCAATATTCTGTGAAGAACTTCAACCGGAGAAGTTAGGACTTGAAAGATTGGACCAATTATTGTTGAATAAAAAACGGTTTGGATCGAAGCATGATGCGGGATCGGATAGTTTATTAATGGCTATGCTTCACGAAAAGGTGTTCGAATGTTTCGATATCGAGCCTGAAACCTGCAATGGATTTTTGTATGGCTTCTCTGATAAATTGGAGGAGTTGATGGACATGAAAATCAAGTTGCATCAAAACCAGAAATTTAGATTGGTTCACCAAATTCCAGGTTTATTTAGGGGCCATGTTACTTGCATTATTTTTATTTTATTTTTATTTTATTTTATTTTTTAG

Coding sequence (CDS)

ATGGGTGGAATAAATCAAGAGCCGAGGGGTGATAACAAAAAAATTCGACAAGTTTGGGCTTATAATTTTGCCTACGAAATTTCCCGCCTCGACCGTTGTGTTCGATTTCACAACATTCTCTCCATCGCCACTAAATTTTCAGGATTTATCAAGCAAACTCCGTGCGGATCGATCGACGAACAACTCTACGCAGATTTTCGATTTAATGTTAACCAAACCAAGCTGATTCAAATGGGGTTGACAGCTATGGATGAATCAGGGAACATCAGCGGGTCATGGGAGTTCAACTTCGATACGGAAACCGATACGCACAATGTGTCGTCGATTACGTTTCTAAACGATCACGAGCTGGATTTTGACAAGTTAAAGCAAGAAAGAATTTCGGTGAGCTTATTTGCACGAAAATTCCTACCGATTGTTCGAAAGAATGAGATATACAGATGGGTCACATTCCACGGATTATATGATATCGGGTATCTTTTAAAGGCGATGGGCGTAATCGAGAAGTTGCCCGAATCAATGGAAGAATTTGCTGGGATAGTTGTGAAAGAAGTTGGTATAGTGAGGCACTTGAAGCACACGTCAATATTCTGTGAAGAACTTCAACCGGAGAAGTTAGGACTTGAAAGATTGGACCAATTATTGTTGAATAAAAAACGGTTTGGATCGAAGCATGATGCGGGATCGGATAGTTTATTAATGGCTATGCTTCACGAAAAGGTGTTCGAATGTTTCGATATCGAGCCTGAAACCTGCAATGGATTTTTGTATGGCTTCTCTGATAAATTGGAGGAGTTGATGGACATGAAAATCAAGTTGCATCAAAACCAGAAATTTAGATTGGTTCACCAAATTCCAGGTTTATTTAGGGGCCATGTTACTTGCATTATTTTTATTTTATTTTTATTTTATTTTATTTTTTAG

Protein sequence

MGGINQEPRGDNKKIRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFNFDTETDTHNVSSITFLNDHELDFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKVFECFDIEPETCNGFLYGFSDKLEELMDMKIKLHQNQKFRLVHQIPGLFRGHVTCIIFILFLFYFIF

Homology

[Close]

BLAST of Sed0007892.1 vs. NCBI nr
Match: XP_023533172.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-84
Identity = 160/273 (58.61%), Postives = 203/273 (74.36%), Query Frame = 0


Query: 1   MGGINQEPRGDNKKIRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDE 60
           M  I + PRGDN  IR+VWAYN  +EI RLDRC+  ++++SI T+F G IK+TP G+IDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHEL 120
           +LYADFRFNVNQTK+IQ+G+T  DE GNI G+WEFN   FD E D HN +SI FL  + L
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDEVGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEF 180
           DF KLK++ I V  FA +FL  +RK+ IYRWVTFHGLYDIGYL+ AMGV++ LPE++ EF
Sbjct: 121 DFGKLKKDGIQVRKFAIRFLYTIRKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 AGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAML 240
             IV + VG VR LKH + FCE L+   LGLE+L Q LL++KRFG KH AGSDSL+ A+L
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQ-LLDQKRFGLKHHAGSDSLMTALL 240

Query: 241 HEKVFECFDIEPETCNGFLYGFSDKLEELMDMK 271
           HEK+ + +D   E C+GFLYG S K EE + ++
Sbjct: 241 HEKMLQRYDFNAEICDGFLYGLSKKFEEFVGLQ 272

[Close]

BLAST of Sed0007892.1 vs. NCBI nr
Match: KAG7027009.1 (putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-84
Identity = 160/273 (58.61%), Postives = 204/273 (74.73%), Query Frame = 0


Query: 1   MGGINQEPRGDNKKIRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDE 60
           M  I + PRGDN  IR+VWAYN  +EI RLDRC+  ++++SI T+F G IK+TP G+IDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHEL 120
           +LYADFRFNVNQTK+IQ+G+T  DE GNI G+WEFN   FD E D HN +SI FL  + L
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEF 180
           DF KLK++ I V  FA +FL  +RK+ IYRW+TFHGLYDIGYL+ AMGV++ LPE++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 AGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAML 240
             IV + VG VR LKH + FCE L+   LGLE+L Q LL++KRFG KH AGSDSL+ A+L
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQ-LLDQKRFGLKHHAGSDSLMTALL 240

Query: 241 HEKVFECFDIEPETCNGFLYGFSDKLEELMDMK 271
           HEK+ + +D   E C+GFLYG S K EEL+ ++
Sbjct: 241 HEKMLQRYDFHAEICDGFLYGLSKKFEELVGLQ 272

[Close]

BLAST of Sed0007892.1 vs. NCBI nr
Match: XP_022947868.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 323.2 bits (827), Expect = 2.5e-84
Identity = 161/273 (58.97%), Postives = 203/273 (74.36%), Query Frame = 0


Query: 1   MGGINQEPRGDNKKIRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDE 60
           M  I + PRGDN  IR+VWAYN  +EI RLDRC+  ++I+SI T+F G IK+TP G+ DE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDE 60

Query: 61  QLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHEL 120
           +LYADFRFNVNQTK+IQ+G+T  DESGNI G+WEFN   FD E D HN +SI FL  + L
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEF 180
           DF KLK++ I V  FA +FL  + K+ IYRWVTFHGLYDIGYL+ AMGV++ LPE++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 AGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAML 240
             IV + VG VR LKH + FCE L+   LGLE+L Q LL++KRFG KH AGSDSL+ A+L
Sbjct: 181 KWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQ-LLDQKRFGLKHHAGSDSLMTALL 240

Query: 241 HEKVFECFDIEPETCNGFLYGFSDKLEELMDMK 271
           HEK+ + +D   E C+GFLYG S K EEL+ ++
Sbjct: 241 HEKMLQRYDFHAEICDGFLYGLSKKFEELVGLQ 272

[Close]

BLAST of Sed0007892.1 vs. NCBI nr
Match: KAG6604930.1 (putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323.2 bits (827), Expect = 2.5e-84
Identity = 159/273 (58.24%), Postives = 204/273 (74.73%), Query Frame = 0


Query: 1   MGGINQEPRGDNKKIRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDE 60
           M  I + PRGDN  IR+VWAYN  +EI RLDRC+  ++++SI T+F G IK+TP G+IDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHEL 120
           +LYADFRFNVNQTK+IQ+G+T  DE GNI G+WEFN   FD E D HN +SI FL  + L
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEF 180
           DF KLK++ I V  FA +F+  +RK+ IYRW+TFHGLYDIGYL+ AMGV++ LPE++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFIYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 AGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAML 240
             IV + VG VR LKH + FCE L+   LGLE+L Q LL++KRFG KH AGSDSL+ A+L
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQ-LLDQKRFGLKHHAGSDSLMTALL 240

Query: 241 HEKVFECFDIEPETCNGFLYGFSDKLEELMDMK 271
           HEK+ + +D   E C+GFLYG S K EEL+ ++
Sbjct: 241 HEKMLQRYDFHAEICDGFLYGLSKKFEELVGLQ 272

[Close]

BLAST of Sed0007892.1 vs. NCBI nr
Match: XP_031736916.1 (putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypothetical protein Csa_006644 [Cucumis sativus])

HSP 1 Score: 322.4 bits (825), Expect = 4.2e-84
Identity = 171/295 (57.97%), Postives = 210/295 (71.19%), Query Frame = 0


Query: 1   MGGINQEPRGDNKK-IRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSID 60
           MGG NQ      K  IRQVWA NF  EI+R D C+RFH IL+I T+F GFI Q+P GSID
Sbjct: 1   MGGRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSID 60

Query: 61  EQLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHE 120
           ++LY DF FNVNQTKLIQ+G+TA D+ G I GSWEFN   FD E D H+  +I FL  + 
Sbjct: 61  DELYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNG 120

Query: 121 LDFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEE 180
           LD  K+K++ I ++ F +KFLPI+RK +I+RWVTFHGLYDIGYL+KAMG+I  LP+SMEE
Sbjct: 121 LDLKKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEE 180

Query: 181 FAGIVVKEVGIVRHLKHTSIFCEELQPE-KLGLERLDQLLLNKKRFGSKHDAGSDSLLMA 240
           FA +VV EVGIVR LKH + FCE L    +LGLERL + LLN KRFG KH+AGSDSLL A
Sbjct: 181 FATVVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGK-LLNLKRFGMKHNAGSDSLLTA 240

Query: 241 MLHEKVFECFDIEPETCNGFLYGFSDKLEEL-MDMKIKLHQNQKFRLVHQIPGLF 290
             H ++ E F +  + CNGFLYGFS+ LE + M MK+K+  +   R    IP  F
Sbjct: 241 SAHLEMVERFGMNSKVCNGFLYGFSETLESMKMKMKMKICHHNILRFSLYIPCYF 294

[Close]

BLAST of Sed0007892.1 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.0e-32
Identity = 93/250 (37.20%), Postives = 128/250 (51.20%), Query Frame = 0


Query: 16  RQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKL 75
           R+VW  N   E++R+  C++   +++  T++ G I +T   S  ++ Y   + NV  TKL
Sbjct: 10  RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKL 69

Query: 76  IQMGLTAMDESGNISGSWEFNFDT---ETDTHNVSSITFLNDHELDFDKLKQERISVSLF 135
           IQ G T  +  G I G WE NF      +DT N  SI FL  H LD  K++ E   V +F
Sbjct: 70  IQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDE--GVDMF 129

Query: 136 ARKFLP----IVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVGIV 195
              F P    + R  +   +VTF G YD  Y L  +    KLPE+  EFA  VVK  G V
Sbjct: 130 GYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFGQV 189

Query: 196 RHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKVFECFDIE 255
              K  + FCE L  E LGL +L Q LL   R G  H AGSDSL+ A++  K+   ++ +
Sbjct: 190 YDTKVMAGFCEGL-GEHLGLSKLAQ-LLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-D 249

Query: 256 PETCNGFLYG 259
                G +YG
Sbjct: 250 SRFARGLIYG 253

[Close]

BLAST of Sed0007892.1 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.7e-31
Identity = 86/225 (38.22%), Postives = 125/225 (55.56%), Query Frame = 0


Query: 27  ISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLIQMGLTAMDES 86
           +S ++ C+R +  ++I T+F   +++T   + DE+ Y D  F+V++ KLIQ+GLT  D +
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 87  GNISGSWEFNFDT--ETDTHNVSSITFLNDHELDFDKLKQERISV-SLFARKFLPIVRKN 146
           G I G+WE NF      D  N  SI FL  + LD  K+++E I +   F+  F  + +  
Sbjct: 61  GRIGGTWEINFSDFGVDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTR 120

Query: 147 EIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVGIVRHLKHTSIFCEELQP 206
               WVTFHG YDI YLLK     E LP + E F+  V + +G V  LK  +  CE L  
Sbjct: 121 RNITWVTFHGSYDIAYLLKGF-TGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLS- 180

Query: 207 EKLGLERL-DQLLLNKKRFGSKHDAGSDSLLMAMLHEKVFECFDI 248
            +LGLE L  +  LN  R G+ H AGS++ L AM+  KV   F +
Sbjct: 181 SRLGLETLAHEFGLN--RVGTAHHAGSNNELTAMVFAKVLSPFPL 221

[Close]

BLAST of Sed0007892.1 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-30
Identity = 87/236 (36.86%), Postives = 132/236 (55.93%), Query Frame = 0


Query: 17  QVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLI 76
           +VW +N   E++ +  C++  N ++I T+F G +K+TP  + DE  Y D +FNV+ T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 77  QMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHELDFDKLKQERISVSLFA 136
           Q+GLT   +   I+ +WE N   F+      N  SI FL ++ LD DK+++E I +  F 
Sbjct: 64  QLGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 137 RKFLPIV-RKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVG-IVRHL 196
            +F  I+  K+   RWVTF G YD  YLLK +   + LPE+ +EF   V + +G  V  +
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 197 KHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKVFECFDI 248
           K  +  C  L   + GL+R+   +L  +R G  H AGSDS L A +  K+   FD+
Sbjct: 184 KKMAGLCSGLS-SRFGLQRIAD-VLQMRRVGKAHHAGSDSELTARVFTKLI--FDL 232

[Close]

BLAST of Sed0007892.1 vs. ExPASy Swiss-Prot
Match: Q9SFX6 (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.4e-29
Identity = 83/230 (36.09%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 17  QVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLI 76
           +VW +N   E++ +  C++  + ++I T+F G +K+TP  + +E  Y D +FNV+ T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 77  QMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHELDFDKLKQERISVSLFA 136
           Q+G T  D  G  + +WE N   FD      N  SI FL  + L+ DK+++E I +  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 137 RKFLPIV-RKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVG-IVRHL 196
           R F  I+  K+    WV F G YD  YL+K +   + LPE+ EEF   V + +G  V  +
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 197 KHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKV 242
           K  +  C  L   + GL+R+   +L  KR G  H AGSDS L A +  K+
Sbjct: 188 KKIAESCSGLS-SQFGLQRIAD-VLQMKRVGKAHHAGSDSELTARVFTKL 234

[Close]

BLAST of Sed0007892.1 vs. ExPASy Swiss-Prot
Match: Q9C6M9 (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-29
Identity = 83/230 (36.09%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 17  QVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLI 76
           +VW +N   E+  +  C++  + ++I T+F G +K+TP  + +E  Y D +FNV+ T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 77  QMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHELDFDKLKQERISVSLFA 136
           Q+G T  D  G I+ +WE N   F+      N  SI FL  + L+ DK+ +E I +  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 137 RKFLPIVR-KNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVG-IVRHL 196
           R F  I++ K+    WV F G YD  YL+K +   + LPE+ EEF   V + +G  V  +
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 197 KHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKV 242
           K  +  C  L   + GL+R+   +L  KR G  H AGSDS L A +  K+
Sbjct: 183 KKIAESCSGLS-SRFGLQRIAD-VLQMKRVGKAHHAGSDSELTARVFTKL 229

[Close]

BLAST of Sed0007892.1 vs. ExPASy TrEMBL
Match: A0A6J1G7T4 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.2e-84
Identity = 161/273 (58.97%), Postives = 203/273 (74.36%), Query Frame = 0


Query: 1   MGGINQEPRGDNKKIRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDE 60
           M  I + PRGDN  IR+VWAYN  +EI RLDRC+  ++I+SI T+F G IK+TP G+ DE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDE 60

Query: 61  QLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHEL 120
           +LYADFRFNVNQTK+IQ+G+T  DESGNI G+WEFN   FD E D HN +SI FL  + L
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEF 180
           DF KLK++ I V  FA +FL  + K+ IYRWVTFHGLYDIGYL+ AMGV++ LPE++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 AGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAML 240
             IV + VG VR LKH + FCE L+   LGLE+L Q LL++KRFG KH AGSDSL+ A+L
Sbjct: 181 KWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQ-LLDQKRFGLKHHAGSDSLMTALL 240

Query: 241 HEKVFECFDIEPETCNGFLYGFSDKLEELMDMK 271
           HEK+ + +D   E C+GFLYG S K EEL+ ++
Sbjct: 241 HEKMLQRYDFHAEICDGFLYGLSKKFEELVGLQ 272

[Close]

BLAST of Sed0007892.1 vs. ExPASy TrEMBL
Match: A0A0A0LPP0 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 2.1e-84
Identity = 171/295 (57.97%), Postives = 210/295 (71.19%), Query Frame = 0


Query: 1   MGGINQEPRGDNKK-IRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSID 60
           MGG NQ      K  IRQVWA NF  EI+R D C+RFH IL+I T+F GFI Q+P GSID
Sbjct: 1   MGGRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSID 60

Query: 61  EQLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHE 120
           ++LY DF FNVNQTKLIQ+G+TA D+ G I GSWEFN   FD E D H+  +I FL  + 
Sbjct: 61  DELYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNG 120

Query: 121 LDFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEE 180
           LD  K+K++ I ++ F +KFLPI+RK +I+RWVTFHGLYDIGYL+KAMG+I  LP+SMEE
Sbjct: 121 LDLKKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEE 180

Query: 181 FAGIVVKEVGIVRHLKHTSIFCEELQPE-KLGLERLDQLLLNKKRFGSKHDAGSDSLLMA 240
           FA +VV EVGIVR LKH + FCE L    +LGLERL + LLN KRFG KH+AGSDSLL A
Sbjct: 181 FATVVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGK-LLNLKRFGMKHNAGSDSLLTA 240

Query: 241 MLHEKVFECFDIEPETCNGFLYGFSDKLEEL-MDMKIKLHQNQKFRLVHQIPGLF 290
             H ++ E F +  + CNGFLYGFS+ LE + M MK+K+  +   R    IP  F
Sbjct: 241 SAHLEMVERFGMNSKVCNGFLYGFSETLESMKMKMKMKICHHNILRFSLYIPCYF 294

[Close]

BLAST of Sed0007892.1 vs. ExPASy TrEMBL
Match: A0A5A7TRG1 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001200 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 6.0e-84
Identity = 172/302 (56.95%), Postives = 219/302 (72.52%), Query Frame = 0


Query: 1   MGGINQEPRGDNKK--IRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSI 60
           MGG NQ     +KK  IRQVWA NF  EI++ D C+RFH IL+I T+F GFI Q+P  SI
Sbjct: 1   MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSI 60

Query: 61  DEQLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDH 120
           DE++Y +FRFNVNQ KLIQ+G+TA ++ G I GSWEFN   FD + D+H+ S+I FL  +
Sbjct: 61  DEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKN 120

Query: 121 ELDFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESME 180
            LDF KLK+  I ++ F +KFLPI++K +I+RWVTFHGLYDIGYL+KAMG+I  LP+SME
Sbjct: 121 GLDFKKLKKYGIPIASFTKKFLPIIQKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSME 180

Query: 181 EFAGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMA 240
           EFA +VV EVGIVR LKH + FCE L+  +LGLERL + +LNKKRFG KH+AGSDSLL A
Sbjct: 181 EFATLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGK-ILNKKRFGMKHNAGSDSLLTA 240

Query: 241 MLHEKVFECFDIEPETCNGFLYGFSDKLEELMDMKIKLHQNQKFRLVHQIPGLFRGHVTC 298
             H ++ + F +  E CNGFLYGFS+ LE    MK+ ++ +   RL  QIP  F    +C
Sbjct: 241 SAHFEMVKRFGMTYEVCNGFLYGFSESLE---SMKMIIYHHNILRL-GQIPH-FPYTPSC 296

[Close]

BLAST of Sed0007892.1 vs. ExPASy TrEMBL
Match: A0A6J1I6H7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469633 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 6.6e-83
Identity = 157/273 (57.51%), Postives = 200/273 (73.26%), Query Frame = 0


Query: 1   MGGINQEPRGDNKKIRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDE 60
           M  I Q PRGDN  I +VWAYN   EI RLD C+  + ++SI T+F G IK+TP G+IDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHEL 120
           +LYADFRFNVNQTK+IQ+G+T  DESGNI G+WEFN   FD E D HN +SI FL  + L
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEF 180
           DF KLK++ I V  FA +FL  +RK+ I++W+TFHGLYDIGYL+ A+GV++ LPE++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 AGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAML 240
             IV + VG VR LKH + FCE L+   LGLE+L Q LL++KRFG KH AGSDSL+ A+L
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQ-LLDQKRFGLKHHAGSDSLMTALL 240

Query: 241 HEKVFECFDIEPETCNGFLYGFSDKLEELMDMK 271
           HEK+ + +D   E C+GFLYG S K EE + M+
Sbjct: 241 HEKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQ 272

[Close]

BLAST of Sed0007892.1 vs. ExPASy TrEMBL
Match: A0A6J1I3Q4 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469634 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.9e-82
Identity = 156/273 (57.14%), Postives = 199/273 (72.89%), Query Frame = 0


Query: 1   MGGINQEPRGDNKKIRQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDE 60
           M  I Q PRGDN  I +VWAYN   EI RLD C+  + ++SI T+F G IK+TP G+IDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYADFRFNVNQTKLIQMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHEL 120
           +LYADFRFNVNQTK+IQ+G+T  DESGNI G+WEFN   FD E D HN +SI FL  + L
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFDKLKQERISVSLFARKFLPIVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEF 180
           DF KLK++ I V  FA +FL  +RK+ I++W+TFHGLYDIGYL+ A+GV++ LPE++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 AGIVVKEVGIVRHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAML 240
             IV + VG VR LKH + FCE L+   LGLE+L Q LL++KRFG KH AGSDSL+  +L
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQ-LLDQKRFGLKHHAGSDSLMTVLL 240

Query: 241 HEKVFECFDIEPETCNGFLYGFSDKLEELMDMK 271
           HEK+ + +D   E C+GFLYG S K EE + M+
Sbjct: 241 HEKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQ 272

[Close]

BLAST of Sed0007892.1 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-33
Identity = 93/250 (37.20%), Postives = 128/250 (51.20%), Query Frame = 0


Query: 16  RQVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKL 75
           R+VW  N   E++R+  C++   +++  T++ G I +T   S  ++ Y   + NV  TKL
Sbjct: 10  RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKL 69

Query: 76  IQMGLTAMDESGNISGSWEFNFDT---ETDTHNVSSITFLNDHELDFDKLKQERISVSLF 135
           IQ G T  +  G I G WE NF      +DT N  SI FL  H LD  K++ E   V +F
Sbjct: 70  IQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDE--GVDMF 129

Query: 136 ARKFLP----IVRKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVGIV 195
              F P    + R  +   +VTF G YD  Y L  +    KLPE+  EFA  VVK  G V
Sbjct: 130 GYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFGQV 189

Query: 196 RHLKHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKVFECFDIE 255
              K  + FCE L  E LGL +L Q LL   R G  H AGSDSL+ A++  K+   ++ +
Sbjct: 190 YDTKVMAGFCEGL-GEHLGLSKLAQ-LLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-D 249

Query: 256 PETCNGFLYG 259
                G +YG
Sbjct: 250 SRFARGLIYG 253

[Close]

BLAST of Sed0007892.1 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-32
Identity = 86/225 (38.22%), Postives = 125/225 (55.56%), Query Frame = 0


Query: 27  ISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLIQMGLTAMDES 86
           +S ++ C+R +  ++I T+F   +++T   + DE+ Y D  F+V++ KLIQ+GLT  D +
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 87  GNISGSWEFNFDT--ETDTHNVSSITFLNDHELDFDKLKQERISV-SLFARKFLPIVRKN 146
           G I G+WE NF      D  N  SI FL  + LD  K+++E I +   F+  F  + +  
Sbjct: 61  GRIGGTWEINFSDFGVDDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTR 120

Query: 147 EIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVGIVRHLKHTSIFCEELQP 206
               WVTFHG YDI YLLK     E LP + E F+  V + +G V  LK  +  CE L  
Sbjct: 121 RNITWVTFHGSYDIAYLLKGF-TGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLS- 180

Query: 207 EKLGLERL-DQLLLNKKRFGSKHDAGSDSLLMAMLHEKVFECFDI 248
            +LGLE L  +  LN  R G+ H AGS++ L AM+  KV   F +
Sbjct: 181 SRLGLETLAHEFGLN--RVGTAHHAGSNNELTAMVFAKVLSPFPL 221

[Close]

BLAST of Sed0007892.1 vs. TAIR 10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-31
Identity = 87/236 (36.86%), Postives = 132/236 (55.93%), Query Frame = 0


Query: 17  QVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLI 76
           +VW +N   E++ +  C++  N ++I T+F G +K+TP  + DE  Y D +FNV+ T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 77  QMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHELDFDKLKQERISVSLFA 136
           Q+GLT   +   I+ +WE N   F+      N  SI FL ++ LD DK+++E I +  F 
Sbjct: 64  QLGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 137 RKFLPIV-RKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVG-IVRHL 196
            +F  I+  K+   RWVTF G YD  YLLK +   + LPE+ +EF   V + +G  V  +
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 197 KHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKVFECFDI 248
           K  +  C  L   + GL+R+   +L  +R G  H AGSDS L A +  K+   FD+
Sbjct: 184 KKMAGLCSGLS-SRFGLQRIAD-VLQMRRVGKAHHAGSDSELTARVFTKLI--FDL 232

[Close]

BLAST of Sed0007892.1 vs. TAIR 10
Match: AT1G27820.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-30
Identity = 83/230 (36.09%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 17  QVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLI 76
           +VW +N   E++ +  C++  + ++I T+F G +K+TP  + +E  Y D +FNV+ T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 77  QMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHELDFDKLKQERISVSLFA 136
           Q+G T  D  G  + +WE N   FD      N  SI FL  + L+ DK+++E I +  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 137 RKFLPIV-RKNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVG-IVRHL 196
           R F  I+  K+    WV F G YD  YL+K +   + LPE+ EEF   V + +G  V  +
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 197 KHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKV 242
           K  +  C  L   + GL+R+   +L  KR G  H AGSDS L A +  K+
Sbjct: 188 KKIAESCSGLS-SQFGLQRIAD-VLQMKRVGKAHHAGSDSELTARVFTKL 234

[Close]

BLAST of Sed0007892.1 vs. TAIR 10
Match: AT1G27890.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-30
Identity = 83/230 (36.09%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 17  QVWAYNFAYEISRLDRCVRFHNILSIATKFSGFIKQTPCGSIDEQLYADFRFNVNQTKLI 76
           +VW +N   E+  +  C++  + ++I T+F G +K+TP  + +E  Y D +FNV+ T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 77  QMGLTAMDESGNISGSWEFN---FDTETDTHNVSSITFLNDHELDFDKLKQERISVSLFA 136
           Q+G T  D  G I+ +WE N   F+      N  SI FL  + L+ DK+ +E I +  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 137 RKFLPIVR-KNEIYRWVTFHGLYDIGYLLKAMGVIEKLPESMEEFAGIVVKEVG-IVRHL 196
           R F  I++ K+    WV F G YD  YL+K +   + LPE+ EEF   V + +G  V  +
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 197 KHTSIFCEELQPEKLGLERLDQLLLNKKRFGSKHDAGSDSLLMAMLHEKV 242
           K  +  C  L   + GL+R+   +L  KR G  H AGSDS L A +  K+
Sbjct: 183 KKIAESCSGLS-SRFGLQRIAD-VLQMKRVGKAHHAGSDSELTARVFTKL 229

The following BLAST results are available for this feature:

BLAST of Sed0007892.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533172.1	1.5e-84	58.61	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]
KAG7027009.1	1.5e-84	58.61	putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp....	[more]
XP_022947868.1	2.5e-84	58.97	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
KAG6604930.1	2.5e-84	58.24	putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp....	[more]
XP_031736916.1	4.2e-84	57.97	putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypoth...	[more]

BLAST of Sed0007892.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	3.0e-32	37.20	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	5.7e-31	38.22	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
O64773	2.1e-30	36.86	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SFX6	2.4e-29	36.09	Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9C6M9	3.1e-29	36.09	Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Sed0007892.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7T4	1.2e-84	58.97	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3...	[more]
A0A0A0LPP0	2.1e-84	57.97	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV...	[more]
A0A5A7TRG1	6.0e-84	56.95	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1I6H7	6.6e-83	57.51	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469633 PE=3 S...	[more]
A0A6J1I3Q4	1.9e-82	57.14	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469634 PE=3 S...	[more]

BLAST of Sed0007892.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	2.1e-33	37.20	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	4.0e-32	38.22	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G61470.1	1.5e-31	36.86	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27820.1	1.7e-30	36.09	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27890.1	2.2e-30	36.09	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..263 e-value: 1.0E-50 score: 174.2
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 13..286
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 13..286
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 11..244

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0007892	Sed0007892	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007892.1-exon	Sed0007892.1-exon-LG01:2036246..2037169	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0007892.1-cds	Sed0007892.1-cds-LG01:2036246..2037169	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0007892.1	Sed0007892.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity