Sed0007850.1 (mRNA) Chayote v1

Overview
NameSed0007850.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit
LocationLG02: 46580016 .. 46584869 (-)
Sequence length534
RNA-Seq ExpressionSed0007850.1
SyntenySed0007850.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACTTTCTATTTTCTTCACAAAAAAAAAGGCAATTTCGGAATCCGTTCACCAAATCAATTGTCAAATTTATACGTTCGCCGATCTTGACACAATCAGTAAGTCAGTTTTGTTATGTTCATACGAAATTCTTGTAAATAACACCGGATTTGGATAAATCTCAAATCACCCAATTCATTCATTTTGGGGTGCGTCTCTATTTGTTGCATTCAATTTCTTATTCACGTTTTGATTTCTGTTTTTTTTTTCCCCTTTTTTAAACATCATTTATGATATTTGTTGAGTTAGTGGATTATGTGTTTTAAATGAATCTGTAACGGACAGCTTAATCGGCTAAGACTCACGAGCCTCACGAGTGAACTTAATTGTATAATTTTGTTATTCTCGGGTTTGGGCTTTGAGATGACGTAGGTGGTCTGGGTATGGAGTTAAAAAAAAGTGCATCAAATTAACCATTATGGAATGATTTAGTGGTAAAAAAATGCATGAGATTAATTGTCGTGGAATGATCTACTCGGTTTTTTGTTTTTAAAATTTAAGCCTACAATTACTACTCCAATATAGTATTTTCACTACTTTGGTACCTACATTTTATGTTCTTAAAAACAAAACCAAAATTTGTAAGCTAAAAAAAATAGTTTCTAAATACTTGTTTTGATTTTTGAAATTTGGTTTGGATTCACATACTTTTTTAAAGGAAGATGGAACAATAAATAGGTAGAGATTTTCAGTAAATATATATTTAAATTTCAAAAATCAAATAATTATCAAACGGAGTAGAAAAGGTGATAGGTTCAATCCATGATAGTCATCTGCCTAATAAATAATTTCATGCCCCCAAGGGGTGACATAATGGTTGAAGACTTAAGCTTTGAAAGTATGCTCCCCTCAAGGTCCCAGGTTCGAGACTCACTTGTGATATTACTCATTCGATGTCTCCCAGTGCCTATTTTAGGGATGGTGACCTTGTTTCAAAAAAAGAAATCTTATGAGTTTTTTTTTTTTTTTTTGAAACAAGGGTAACCACGCCCGTCCCTAGGCCAGGCACCGGGAAAATCCTATGAGTTTTCTTGACATCTAAATGTTGTAGAATCAGAGATATATCAAGTGAAAATAGTTAAGGTGCACCGTGCACGTAAGTTGACCGAATACTCACGGATTAAAGAAAAAAATGCATTAGATTGTTGATTGATGGAGGATGGATTTGTGTTAGGATCAAGCTAATGGAGTTTTGCCCAACTTGTGGGAATATGCTGCAATTTGAGTTGCCCCATATGGGTAAAGCTTGTAGATTCTTTTGCTCGACTTGTCCATATGTGGCTTACTTGGAGAATAGGGTATGTGACCTGTAATTTCTTTGTTCAACTTCCTTCTTTTTTGCCTCTTAATTTCTTATGTGGTGATTTAAGGAATGTGTTGTCGTGGTTCTAATATTCAGGTTAAGATCAAGAGAAAGCAGCATTTGGATAAAAAGGAATTAGAACCCATAATCTGTGAGGACGATATGAAAAATGCAGCTCAAACTGAAGGTTTACACCTTTCCCTTTCTCGCTATGTGTATTTTCCTTTTCTTCCTTTTATTGTTCAATTTTTTTGTTCCTGAATAAATTTATACCTTATAGAGTCAGGAAAAATAATTCACATTTAAAATTAAATGTGTTTATATATTGTATATAGTAATGGTGGACAGCTAAACTAGACCAACCGTTTTTGGTCCCCAAAGGGTGGCATGGTAGTCTAAGGTTCGGACTTTGAAGCTGTGCTCTCCTTAAGGTTCCAAGTTTGAGACTCACCTGTGACATTAATTTGTAGACAGTCTCCCGTGTCTCTATTCCTTTGATGTCTACCAATTCTTGACCTGGAGTTGGACGTGGTTACCTCGAATATGGTGGAGTAAAAGGCATGGTAGTCTAAGGTTTGGACTTTGAAGCTGTGCTCTCTTCAAGGTGCCAGGTTTGAGACTCACCTGTGACATTAATTTGTAGACAGCCTCCCGTGTCTCTATTCTTTTGATGTCTACCAATTCTTGACCTAGAGATGGATGTGGTTACTCCGGATATAGTTGAGTAAAACTTTGATTTTTCAGTTTTCAAAAACAATTTTCGGAAGGGTCGTCCCCAAGGGGTGGCATAGTGGTTGAAGACTTGGGCTTTGTGGGTATGCTCCTCTCAAGGTCCCAGGTTCGAGACTCAGTTGTCACATTATTCCTTCGATGGCTCATGGTCAGGCCTAGGGACGGGCGTGGTTATCCTTGTTTAAAAAAAAATCCTAATGACTGAAGTCTCTCAATCCTGATAACAAGTAGCATAAAAGAATCCTAATGACTGAAGTCTCTGAATCCTGATAACAAGTAGCATAAAAATTTACAAAAATGATAATTAAGGCCCCAAATTTGTTCCTTAGGAACTAAATCTTGAAGGATTTTCCGTCATGTTCCAACCAAGCCTGCAAATTAAGAAATTACCATTTGAGCTAGAGGAACAATGAAAGCTTTGTCTTTGGGATAACATGGTTTGGTTGACAAACCACATGAGGATTTTGCTCTTTTTTTCAACTTTTGGACGTCTAAGGCCCCGTTTGATAACCATTTTGTTTTTCGTTTTTTGTTTATCAAATTTAAGTCTATAACAACTACCTTGTTATACCTTTTTCCTTATTTGGATATCTCCATCTTATCTATATTTTAATAACAAAACCAAAATTTGGAAACAAAAAAAAAGTAGCTTCCAAAAGCTCGTTTATGTTTTTGACATTTGGTCAGTATTCACCTACTTTCCTACAAAAATATGGATATATTGTAGGAAAGATGGAACATATGGTAGGAGATTTGAGTAGAAATAAGCTTAAATTTCATAAAGCAAAAACAAAAAACCAAATAGTTATCAAGTGGGGCCTAAATAATCTCCTACACAACATCATTTTCGTTTGTAAACAACCTAACTTTCATTGAGATCAAATTTAAGAATACACGGACATATAAAAAGGAAGTCCACAAAAACAAAAATGACTGCCAATCCAATGTAATTGTACACAACATCATTGAGATAATGTCCAGTTTAGGGACAGTACTAGTTGAAACAAAACCCTGTAGGAGTGAGGTTTCATATTCTAGAATTTTGGTTAAGGAAATTGTGGATGATATGTAAAGGCTGTCACAACTCAATTTATCTGTAGAAACATGTCAATGAAATCCCAGTCAACTTTATTTTCAGCTTTCTCCAGATCAAGATCAAGCTTAGAGATGAGTCCTTTCTCTTCTTCTTTCCTTCATTCCTTAAACTCGTCCATTTCATTTACAAGTGAAACAGGATCATCCTTTCATGTATTGTTTTTTTTTTAATATTCGTGATTGTCTCGACCATTTTGTGTGCACCTCGAGTACTATTGTCACGGGACATACCATTTGACCTACCACATTTGGAAGTCAAGGAAACTCGTAAGCAATTAATCTTTAGGTAGGTGGCTACCATGGATTGAACCCTTCACTTCTTAGTTTTCTTAGGCCGGTCTTGACCATTAGGTCAGTCCATGATTGTTCATCTTTTCATGTATTGCATTCTTCAATGGATGATTTATCTCTTCAATCTTCTAAAAGAGCAAGATTGGTAGCTTTTAGTCTTTTGTGAAACTTTTAAATATTCCATGGTTCTTCCTCTGTATCTTACTTGTGAACCCGTGTTGGGTGGAAGATGTATGAACTATGAATTGAGTCTGTAAAACTGGAAATCAGATCATAGAGCGGCTCAACACCACTGATTTATGCTCATCACTGAGATAAGTGTAGGGTAGGAATGTATTCTAGCTTCAAAACTTATACGTTTTAAGCTTGTAAGGGGGTGTTTGGAGTAAGAGAATGAGAATGATTATGAGGAGAATGAAAATTATAAGGAGAATAATATAATGAAGAGTGATTATTTGTGTTTGTGGTGAAGAGAATGATTATGAGAAGGACCACAAATTATGTTTGAGGTGAAGAGAATAATTGTGAGGAAACTAAAATAATGAGTATGATGTGAGTGAAAAACAGTTATGATGAGAATAGAAAGTAGTTAGGAGGAGGCCCCAAGGGGTGGCATAGTAGTTGAAAACTTGGGCTTTGAGAGTATATTCCCCTCAAGGTCCCAGGTTCGAGACTCAATTGTGACATTACTCTTTCGATGTCTCCCGGTTCTTGGCCTAGGGACGAGCGTGGTTACCCTTGTTTCAAAAAAATAAAGTAGTTAGGAGGAGAAAAAAAAAAGGTTATTGAAAAATGCAATTATGGAGAGAATGATTCTCGGTGGCCTAAACACCGACAATCATCCTCTTTCACGTTCTCCTCATTTCACCCATTTGCTCTAAACATCCCCTTATTGCCTGTGAATACACATTTAATTAGTTTTGCACAATAGTTTTTAACCATGTTAATTAACTCCATGGACTTATAACTAGGAATTGTCTCATGTTCTGGTATGCGCTGTTGTCATAGTAATTCAATATGTCCCATGAAAATAGTCAGGGTGTGCGTATCACTCACACATATCCATTATTATTATTTTTTTTTTTCAGTAATGGGAAGTTTTAGTATGAATTTTCTTCAATGTTTATTTCTTTCTAATTCCTAAATTGCCTTTTGGTTCTGCCCATATTGCAGCAACATGTCCAAAGTGTGCGTTTGGCAAGGCTGCTTTTATGCAAATACAATTGAGATCAGCCGATGAACCTGCTTCAACATTTTATAAGTGCATGAACGAAAACTGCCGTATAATTTGGCGTGAGGATTAAGTGCCATGAAGTGAGATCATGAATTTTTCATTACCCATTTTTTAATTTTTTTTTCCCAATAGGTGTAGAAGTATTTATTTTTAGATTAGAA

mRNA sequence

GCACTTTCTATTTTCTTCACAAAAAAAAAGGCAATTTCGGAATCCGTTCACCAAATCAATTGTCAAATTTATACGTTCGCCGATCTTGACACAATCAGATCAAGCTAATGGAGTTTTGCCCAACTTGTGGGAATATGCTGCAATTTGAGTTGCCCCATATGGGTAAAGCTTGTAGATTCTTTTGCTCGACTTGTCCATATGTGGCTTACTTGGAGAATAGGGTTAAGATCAAGAGAAAGCAGCATTTGGATAAAAAGGAATTAGAACCCATAATCTGTGAGGACGATATGAAAAATGCAGCTCAAACTGAAGCAACATGTCCAAAGTGTGCGTTTGGCAAGGCTGCTTTTATGCAAATACAATTGAGATCAGCCGATGAACCTGCTTCAACATTTTATAAGTGCATGAACGAAAACTGCCGTATAATTTGGCGTGAGGATTAAGTGCCATGAAGTGAGATCATGAATTTTTCATTACCCATTTTTTAATTTTTTTTTCCCAATAGGTGTAGAAGTATTTATTTTTAGATTAGAA

Coding sequence (CDS)

ATGGAGTTTTGCCCAACTTGTGGGAATATGCTGCAATTTGAGTTGCCCCATATGGGTAAAGCTTGTAGATTCTTTTGCTCGACTTGTCCATATGTGGCTTACTTGGAGAATAGGGTTAAGATCAAGAGAAAGCAGCATTTGGATAAAAAGGAATTAGAACCCATAATCTGTGAGGACGATATGAAAAATGCAGCTCAAACTGAAGCAACATGTCCAAAGTGTGCGTTTGGCAAGGCTGCTTTTATGCAAATACAATTGAGATCAGCCGATGAACCTGCTTCAACATTTTATAAGTGCATGAACGAAAACTGCCGTATAATTTGGCGTGAGGATTAA

Protein sequence

MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED
Homology
[Close]
BLAST of Sed0007850.1 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida])

HSP 1 Score: 214.9 bits (546), Expect = 3.4e-52
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP CAFGKAAF+QIQLRSADEPA+TFYKCMNENCR  WRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]
BLAST of Sed0007850.1 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 3.4e-52
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP CAFGKAAF+QIQLRSADEPA+TFYKCMNENCR  WRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of Sed0007850.1 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 38  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 97

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCMNE+CR  WRED
Sbjct: 98  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 148

[Close]
BLAST of Sed0007850.1 vs. NCBI nr
Match: KAG7029162.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 44  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 103

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCMNE+CR  WRED
Sbjct: 104 MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 154

[Close]
BLAST of Sed0007850.1 vs. NCBI nr
Match: XP_022932603.1 (DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022932604.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022972319.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_022972320.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_023539106.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo] >XP_023539107.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCMNE+CR  WRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of Sed0007850.1 vs. ExPASy Swiss-Prot
Match: Q9Y2Y1 (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-17
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 3   FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CEDD 62
           FCP CGN L  E    G+ C RF C+TCPYV  +    K+  +++   KE++ ++     
Sbjct: 4   FCPGCGNGLIVE---EGQRCHRFSCNTCPYVHNITR--KVTNRKYPKLKEVDDVLGGAAA 63

Query: 63  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRE 111
            +N   T  +CPKC   +A FMQ+Q RSADEP +TFYKC N  C   WR+
Sbjct: 64  WENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Sed0007850.1 vs. ExPASy Swiss-Prot
Match: Q9CQZ7 (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 0 

Query: 3   FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CEDD 62
           FCP CGN L  E    G+ C RF C+TCPYV  +    K+  +++   KE++ ++     
Sbjct: 4   FCPGCGNGLIVE---EGQRCHRFACNTCPYVHNITR--KVTNRKYPKLKEVDDVLGGAAA 63

Query: 63  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRE 111
            +N   T   CPKC   +A FMQ+Q RSADEP +TFYKC N  C   WR+
Sbjct: 64  WENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Sed0007850.1 vs. ExPASy Swiss-Prot
Match: Q2M2S7 (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-15
Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 3   FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDM 62
           FCP CGN L  E    G+ C RF C+TCPYV  +  +V   RK    K+  + +      
Sbjct: 4   FCPGCGNGLIVE---EGQRCHRFACNTCPYVHNVTRKV-TNRKYPKLKEVDDELGGAAAW 63

Query: 63  KNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRE 111
           +N   T   CPKC   +A FMQ+Q R ADEP +TFYKC N  C   WR+
Sbjct: 64  ENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of Sed0007850.1 vs. ExPASy Swiss-Prot
Match: O13896 (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc11 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.0e-15
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CED 60
           M+FCPTCGN L   +   G+   F C TCPY  +      +  +    +KE++ ++  E+
Sbjct: 1   MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEE 60

Query: 61  DMKNAAQTEATC--PKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
             ++  QTE TC   KC   +A F Q+Q+RSADEP STFY+C    C+  WRE+
Sbjct: 61  AFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRC--TKCKFQWREN 109

[Close]
BLAST of Sed0007850.1 vs. ExPASy Swiss-Prot
Match: Q04307 (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC11 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.3e-13
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           + FCP+C NML       G      C +CPY   +E  ++I  ++ L +KE++ ++    
Sbjct: 2   LSFCPSCNNMLLITSGDSG-VYTLACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVL-GGG 61

Query: 61  MKNAAQTEATCPK---CAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
             N  QT+  CP    C    A F Q+Q+RSADEP +TFYKC+  NC   W+E+
Sbjct: 62  WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKEN 110

[Close]
BLAST of Sed0007850.1 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP CAFGKAAF+QIQLRSADEPA+TFYKCMNENCR  WRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of Sed0007850.1 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP CAFGKAAF+QIQLRSADEPA+TFYKCMNENCR  WRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of Sed0007850.1 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.3e-52
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCMNE+CR  WRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of Sed0007850.1 vs. ExPASy TrEMBL
Match: A0A6J1EXG3 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111439113 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.3e-52
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCMNE+CR  WRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of Sed0007850.1 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.8e-51
Identity = 95/111 (85.59%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV +LENRVKIKRKQHL KKELEPII ++D
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLIKKELEPIISDED 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           MKNAAQTEATCP CAFGKAAF+Q+QLRSADEPA+TFYKCMNE+CRI WRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQVQLRSADEPATTFYKCMNEDCRINWRED 111

[Close]
BLAST of Sed0007850.1 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-33
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGN+L++E    G + RFFCSTCPYVA +E RV+IK+KQ L KK +EP++ +DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           +  AA+TEA CP+C   KA F  +Q+RSADEP S FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106

[Close]
BLAST of Sed0007850.1 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-32
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDD 60
           MEFCPTCGN+L++E    G   RFFCSTCPYVAY++ +V+IK+KQ L KK +E ++ +DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 60

Query: 61  MKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRED 112
           +  AA+TEA CP+C   KA F  +Q+RSADEP S FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106

[Close]
BLAST of Sed0007850.1 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 27/76 (35.53%), Postives = 39/76 (51.32%), Query Frame = 0 

Query: 36  ENRVKIKRKQHLDK-KELEPIICEDDMKNAAQTEA-TCPKCAFGKAAFMQIQLRSADEPA 95
           E+    KRKQ  ++ KE     CE  +   A T+   C +C   K  + Q+Q RSADEP 
Sbjct: 303 EDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPM 362

Query: 96  STFYKCMNENCRIIWR 110
           +T+  C+  NC   W+
Sbjct: 363 TTYVTCV--NCDNHWK 376

The following BLAST results are available for this feature:
BLAST of Sed0007850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903069.13.4e-5288.29DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida][more]
XP_004141147.13.4e-5288.29DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 ... [more]
KAG6597716.11.7e-5187.39DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
KAG7029162.11.7e-5187.39DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
XP_022932603.11.7e-5187.39DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_0229... [more]
BLAST of Sed0007850.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9Y2Y16.4e-1742.73DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K ... [more]
Q9CQZ71.1e-1642.73DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k... [more]
Q2M2S72.7e-1543.12DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE... [more]
O138966.0e-1539.47DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (stra... [more]
Q043077.3e-1336.84DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strai... [more]
BLAST of Sed0007850.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CQ501.7e-5288.29DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3... [more]
A0A0A0LCM41.7e-5288.29DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 P... [more]
A0A6J1IB598.3e-5287.39DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 ... [more]
A0A6J1EXG38.3e-5287.39DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143911... [more]
A0A6J1DGL31.8e-5185.59DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110202... [more]
BLAST of Sed0007850.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G07950.11.3e-3356.76DNA-directed RNA polymerase, subunit M, archaeal [more]
AT1G01210.11.5e-3254.95DNA-directed RNA polymerase, subunit M, archaeal [more]
AT2G38560.11.7e-0435.53transcript elongation factor IIS [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 69..110
e-value: 7.3E-14
score: 62.1
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 69..109
e-value: 6.9E-15
score: 54.6
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 71..108
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 67..109
score: 12.693425
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 2..56
e-value: 7.6E-8
score: 42.1
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 1..32
e-value: 1.8E-6
score: 27.7
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..111
e-value: 8.8E-25
score: 85.4
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..110
NoneNo IPR availableGENE3D2.20.25.10coord: 55..111
e-value: 9.7E-17
score: 62.2
NoneNo IPR availableGENE3D2.20.70.10coord: 1..34
e-value: 1.0E-5
score: 27.1
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 1..110
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 1..39
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 57..111
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 3..29
IPR034014Pol III subunit C11, C-terminal zinc ribbonCDDcd10509Zn-ribbon_RPC11coord: 63..110
e-value: 8.73613E-21
score: 76.4702

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0007850Sed0007850gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0007850.1-exonSed0007850.1-exon-LG02:46580016..46580237exon
Sed0007850.1-exonSed0007850.1-exon-LG02:46583342..46583432exon
Sed0007850.1-exonSed0007850.1-exon-LG02:46583534..46583657exon
Sed0007850.1-exonSed0007850.1-exon-LG02:46584773..46584869exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0007850.1-three_prime_utrSed0007850.1-three_prime_utr-LG02:46580016..46580106three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0007850.1-cdsSed0007850.1-cds-LG02:46580107..46580237CDS
Sed0007850.1-cdsSed0007850.1-cds-LG02:46583342..46583432CDS
Sed0007850.1-cdsSed0007850.1-cds-LG02:46583534..46583647CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0007850.1-five_prime_utrSed0007850.1-five_prime_utr-LG02:46583648..46583657five_prime_UTR
Sed0007850.1-five_prime_utrSed0007850.1-five_prime_utr-LG02:46584773..46584869five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0007850.1Sed0007850.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0042779 tRNA 3'-trailer cleavage
biological_process GO:0006386 termination of RNA polymerase III transcription
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity