Sed0007546.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCAAAACAAAATGGAAAAATAGTCCAATGGAGCACAATTCTACAAAATTTGGGACGTCGTGCTTTAAATACGAGAAGGTCAACACTGTAATTTCGTCCATCATTGTATCAATATTCTAAAACATAAACGGAGGGTATTTTGGGGAAAAGACACGTAGAATTGGCATATTACCAAATATTTTGTAAATATAAGCTTTCCCTCAGCGAGATGCGGAAAACTCTCATAAACTGAGTGAGAAGCGTTCGAGCTCGCTGCTATTGAAAACCAAAAAAAACCCTTTCGTCGGCCAAATTTTCTTGCTCCGATCTGCAATTTCCGGTTCCGATCTCGACCTAGAAAGCGATGGCCATGGCAGCTCTGAGACGTGAAGGGCGGCGGCTCACCACCGTGATCTCTCCTCAACCATTCAACGCTCTTCGGTCTTCTCTCGTTTACGAGTATTCATTTTTGCCCTTTTCCTATTTTTCCCTAATGCGTTTATCTGTGCGACTGATTTTTCAGCGATTTGGATGCTTTGTTAATGATAAAAATGTTGTATCTCTGTTTGATTGATGATGATTTGAACTGATTGATGTTTTATTTTCATAAATTTAGGGCTGCCTCGTTCGTCTGAACCCTTTTATATTGAAATTGAGCTTTATCTTCTGATTGACTTATTGTTCTGAAATGTACTGTTGATTTTTTCCTTGGAAAATTAAAATGAACGATCCTCCATTTATGAGATGCGTGAAACTGCTGCTACTCTTTAATGTGATTTGGGATTTTTAGTTTTTGGAAAAAATTATGGTATATTTTTTAGTGTTTTTGAGAACCATAATCCATTTGTTTTTCTGCTTATTTTATTTTTCATTATGAAAATTGGCTAACCTCCCTCTGCACATAAATCATTAACACTGCATCTGAATGTTTGTTGTTCAGGGAACAAGCCCCTCTTGGTGTACGCTCTATTTCAACTCAAGTGGGTAGGTTCCATTTACTTGAACTGCTATTTCTTTTATAATATTTGGGTTTTTATTTTTATTTGCTGATGATTTACTACATATATATATATATTTTTTTTAAAAATTTTGTGAATGCAGTTAGGAATCGAATGAAGAGTGTGAAAAATATCCAGAAGATTACTAAGGCAATGAAGATGGTTGCAGCTTCAAAGCTGAGAGCAGTTCAAGTGCGTGCTGAAAATTCTAGGGGCCTTTGGCAACCATTCACTGCACTTCTGGGGGACACTCCAAGTACATTTATATGCCATATATTTTATACTTTTCATTGATACATGAGCTGTTTTTCTGTTACTTTTTGTTGGTACATATATTTAACACCCCCCTCTTGATGTTTGATATGTACTTGGCATGTGTATTGTCAAAGTTCGCGTCATACTCATGGCTCATTTTCTGTTTAATGTATCACTTGTTTATATTAATTTATATTTATATTCATACTATCGTAGGCTAAGTTTGTCTACGATATTTTTGTTGGAAACGTAGGTGTTGATGTGAAGAAGAATGTCATTGTTACGGTTTCCTCTGACAAGGGTCTTTGTGGTGGAATTAATTCTACCTCAGTCAAGATAAGCAAGGGCCTGCACAAGTTAATTTCTGGTATTACTTGCAAATTGTTTGTTTATTCTATCCTTTAATGTAATACTGCAGTGAATAAATACTAATTTTGTAATTACTCTGCCATAGGTCCTGATAAGGAAACTAAATATGTTATATTGGGAGAGAAGGCAAAGGCTCAGTTATTGCGTGACTCTAAGAAGGACATTGAAGTCATCATCACCGAACTGCAGAAGAACCCTTTGAATTATACTCAAGTTAGTTAACCACATCATATAGCTCATCACAAAGAATGTCTTTCATTGTTTGTTCACGATGATTCTGTCTATTTGCCTTTGCTACCATGGATTGGAGTAGAATAACAATTAAATGATGCCTATGTCATGAGTATGATCCACTGTGGCAGGGAATGAGAATTACGTGTCCCCATGCTTTTATTGAAATTTTCTTTTTGTTTCTGACCGTGCACTTCTTTTTGTTTAATAAAGTACACTTGTTGATTTGGCATTATTTATCTTCAGACATTGTGCGGTTGACTTAACACTTTGAAATGCCCATTTCTTACTGTCTTTTTTTTCTTCCATATTTAGGTCTCTGTTTTAGCTGATGATATTTTGAAGAACGTTGAATATGATATTCTGAGGATTGTTTTCAACAAGTTCCAATCAGTCGTCTCATTTTTGCCTACAACAGCTACTGTACTATCCCCTGAGGTATAAGGATACTGGATTTTTTTTCACCTCCCCTTCTTTAATTGCTTGCTCTTTCTTTGTAAATATTGTGCGTTCTATATTTTAGATTGTTGAAAGAGAGGCAGAATCTGGTGGAAGGCTTGGTGATCTGGACTCATATGAGATCGAAGGTGGTGAGACAAAGTCTGAGGTTCTCCAAAATCTTGCAGAGTTCCAATTTTCTTGTGTAAGTTTATCCTTCCTAAGTTCATAAGTCTTACATTTTTGTGACGAGATATTAGTTCATTGTTGAAATCGTCACGGTTATGTGCAAACCCAAATGCATAGATACGAAACTTTAAGTTTAATATCTCATAGGAAGTGCGAAACTAAAAAATATCACATAGAAAGTGTCATGCCGTTCAAATTCTGGGTTAAATTAATACATCCGAAACAAGAAGCAAGGCTGAAGATATGAATCAAGTAACCAACTGATTCATGGAAATTTACATCTTTCTTGAGTTACTCTATAGTCTATATTGGACTGATCATGGAAATTTTCTGGATTGTGAGATAGGCTTTCCTTATAATAGATACTGGAAGCGACCGGAAGTAATAGATCCCATCACCATCGGTTACTAGTAATTTTTTAGGATGAATAAGTAATGAAGTTATTGTTGGTCTATCATCTATGGACCCTGGTATGTTTATTGGACGAGGATGCTGCAAAATTGCATGTGAATCAATTTAAATGAAGAAGAGAGGAATTAGGATATGTTTTATGCTATAATGTTGCTTACCTTCTTTATTGTGTATTTTCAATATTAACCTTGTAGCCGGACCGGAACATCTCATTGCTGCTTTTTCATCGAAAATGTATGCAATTACTGAAATCTATATTTATGTTTATCAGGTACTGTTCAATGCCGTACTGGAAAATGCTTGCAGTGAACAGGGTGCAAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCTGGAGATATGCTTGATCGCCTCACATTAACTTATAACAGGTCTTTTAACTTGCAGACTATCTTCTTTTTGCAGTCTACTTAAGAAAGTTTTCAGAATTCTAGCCTAAATTAGTCAAAGACATTATAAGTAAATAAAACCAATAGATATTTCAAATCTCTCTTGGGGATCCAAGAGGTATCCTCGGTAGGGTAGTCACCTACCTAGAAATGAACATAATAGATACACACTTGAACCGATCTAGAACTTGCTCATTTTCTCATTATTATTTTTTCCTGTGAAACTGAGCATTGTTCGTTAATTTGTGATAGAACCCGGCAAGCATCTATCACGACCGAGTTGACTGAAATTATATCTGGAGCTTCAGCATTGGAGGGCTAGTTGGCTAGTAGATCTTCTGCTAGTTCACCCAATGGTTGGTGAACTAAGATCTCGAGGCTATATTTGAATTATGATGATGTTGTCATTTGAGCTTTTTTTGTAATAATACACCCAGTTTCAAAGTTTTATCCTGGGGAAAACTATGTTTGTTTAGATATCAATTGATTTTCAGATTGCTTCATCCTTTTTGTTTTACTTGAAAACCCCAATGCTTGAATTGACTTTGTTTTTTGATAAACATCTTGGTTTGCAGTATTATATTCAGTTTCTCGTGCTTCCTACTTGCAA TGCAAAACAAAATGGAAAAATAGTCCAATGGAGCACAATTCTACAAAATTTGGGACGTCGTGCTTTAAATACGAGAAGGTCAACACTGTAATTTCGTCCATCATTGTATCAATATTCTAAAACATAAACGGAGGGTATTTTGGGGAAAAGACACGTAGAATTGGCATATTACCAAATATTTTGTAAATATAAGCTTTCCCTCAGCGAGATGCGGAAAACTCTCATAAACTGAGTGAGAAGCGTTCGAGCTCGCTGCTATTGAAAACCAAAAAAAACCCTTTCGTCGGCCAAATTTTCTTGCTCCGATCTGCAATTTCCGGTTCCGATCTCGACCTAGAAAGCGATGGCCATGGCAGCTCTGAGACGTGAAGGGCGGCGGCTCACCACCGTGATCTCTCCTCAACCATTCAACGCTCTTCGGTCTTCTCTCGTTTACGAGGAACAAGCCCCTCTTGGTGTACGCTCTATTTCAACTCAAGTGGTTAGGAATCGAATGAAGAGTGTGAAAAATATCCAGAAGATTACTAAGGCAATGAAGATGGTTGCAGCTTCAAAGCTGAGAGCAGTTCAAGTGCGTGCTGAAAATTCTAGGGGCCTTTGGCAACCATTCACTGCACTTCTGGGGGACACTCCAAGTGTTGATGTGAAGAAGAATGTCATTGTTACGGTTTCCTCTGACAAGGGTCTTTGTGGTGGAATTAATTCTACCTCAGTCAAGATAAGCAAGGGCCTGCACAAGTTAATTTCTGGTCCTGATAAGGAAACTAAATATGTTATATTGGGAGAGAAGGCAAAGGCTCAGTTATTGCGTGACTCTAAGAAGGACATTGAAGTCATCATCACCGAACTGCAGAAGAACCCTTTGAATTATACTCAAGTCTCTGTTTTAGCTGATGATATTTTGAAGAACGTTGAATATGATATTCTGAGGATTGTTTTCAACAAGTTCCAATCAGTCGTCTCATTTTTGCCTACAACAGCTACTGTACTATCCCCTGAGATTGTTGAAAGAGAGGCAGAATCTGGTGGAAGGCTTGGTGATCTGGACTCATATGAGATCGAAGGTGGTGAGACAAAGTCTGAGGTTCTCCAAAATCTTGCAGAGTTCCAATTTTCTTGTGTACTGTTCAATGCCGTACTGGAAAATGCTTGCAGTGAACAGGGTGCAAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCTGGAGATATGCTTGATCGCCTCACATTAACTTATAACAGAACCCGGCAAGCATCTATCACGACCGAGTTGACTGAAATTATATCTGGAGCTTCAGCATTGGAGGGCTAGTTGGCTAGTAGATCTTCTGCTAGTTCACCCAATGGTTGGTGAACTAAGATCTCGAGGCTATATTTGAATTATGATGATGTTGTCATTTGAGCTTTTTTTGTAATAATACACCCAGTTTCAAAGTTTTATCCTGGGGAAAACTATGTTTGTTTAGATATCAATTGATTTTCAGATTGCTTCATCCTTTTTGTTTTACTTGAAAACCCCAATGCTTGAATTGACTTTGTTTTTTGATAAACATCTTGGTTTGCAGTATTATATTCAGTTTCTCGTGCTTCCTACTTGCAA ATGGCCATGGCAGCTCTGAGACGTGAAGGGCGGCGGCTCACCACCGTGATCTCTCCTCAACCATTCAACGCTCTTCGGTCTTCTCTCGTTTACGAGGAACAAGCCCCTCTTGGTGTACGCTCTATTTCAACTCAAGTGGTTAGGAATCGAATGAAGAGTGTGAAAAATATCCAGAAGATTACTAAGGCAATGAAGATGGTTGCAGCTTCAAAGCTGAGAGCAGTTCAAGTGCGTGCTGAAAATTCTAGGGGCCTTTGGCAACCATTCACTGCACTTCTGGGGGACACTCCAAGTGTTGATGTGAAGAAGAATGTCATTGTTACGGTTTCCTCTGACAAGGGTCTTTGTGGTGGAATTAATTCTACCTCAGTCAAGATAAGCAAGGGCCTGCACAAGTTAATTTCTGGTCCTGATAAGGAAACTAAATATGTTATATTGGGAGAGAAGGCAAAGGCTCAGTTATTGCGTGACTCTAAGAAGGACATTGAAGTCATCATCACCGAACTGCAGAAGAACCCTTTGAATTATACTCAAGTCTCTGTTTTAGCTGATGATATTTTGAAGAACGTTGAATATGATATTCTGAGGATTGTTTTCAACAAGTTCCAATCAGTCGTCTCATTTTTGCCTACAACAGCTACTGTACTATCCCCTGAGATTGTTGAAAGAGAGGCAGAATCTGGTGGAAGGCTTGGTGATCTGGACTCATATGAGATCGAAGGTGGTGAGACAAAGTCTGAGGTTCTCCAAAATCTTGCAGAGTTCCAATTTTCTTGTGTACTGTTCAATGCCGTACTGGAAAATGCTTGCAGTGAACAGGGTGCAAGGATGTCTGCCATGGACAGCTCAAGCAGAAATGCTGGAGATATGCTTGATCGCCTCACATTAACTTATAACAGAACCCGGCAAGCATCTATCACGACCGAGTTGACTGAAATTATATCTGGAGCTTCAGCATTGGAGGGCTAG MAMAALRREGRRLTTVISPQPFNALRSSLVYEEQAPLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQVRAENSRGLWQPFTALLGDTPSVDVKKNVIVTVSSDKGLCGGINSTSVKISKGLHKLISGPDKETKYVILGEKAKAQLLRDSKKDIEVIITELQKNPLNYTQVSVLADDILKNVEYDILRIVFNKFQSVVSFLPTTATVLSPEIVEREAESGGRLGDLDSYEIEGGETKSEVLQNLAEFQFSCVLFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELTEIISGASALEG Homology
BLAST of Sed0007546.1 vs. NCBI nr
Match: XP_022137615.1 (ATP synthase subunit gamma, mitochondrial [Momordica charantia]) HSP 1 Score: 572.0 bits (1473), Expect = 3.2e-159 Identity = 304/322 (94.41%), Postives = 312/322 (96.89%), Query Frame = 0
BLAST of Sed0007546.1 vs. NCBI nr
Match: XP_038893671.1 (ATP synthase subunit gamma, mitochondrial [Benincasa hispida]) HSP 1 Score: 568.2 bits (1463), Expect = 4.7e-158 Identity = 300/322 (93.17%), Postives = 312/322 (96.89%), Query Frame = 0
BLAST of Sed0007546.1 vs. NCBI nr
Match: XP_008449787.1 (PREDICTED: ATP synthase subunit gamma, mitochondrial [Cucumis melo] >TYJ98933.1 ATP synthase subunit gamma [Cucumis melo var. makuwa]) HSP 1 Score: 568.2 bits (1463), Expect = 4.7e-158 Identity = 298/322 (92.55%), Postives = 312/322 (96.89%), Query Frame = 0
BLAST of Sed0007546.1 vs. NCBI nr
Match: XP_004137430.1 (ATP synthase subunit gamma, mitochondrial [Cucumis sativus] >KGN64050.1 hypothetical protein Csa_013082 [Cucumis sativus]) HSP 1 Score: 559.3 bits (1440), Expect = 2.2e-155 Identity = 296/322 (91.93%), Postives = 308/322 (95.65%), Query Frame = 0
BLAST of Sed0007546.1 vs. NCBI nr
Match: XP_023001061.1 (ATP synthase subunit gamma, mitochondrial [Cucurbita maxima] >XP_023519564.1 ATP synthase subunit gamma, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 558.5 bits (1438), Expect = 3.7e-155 Identity = 300/322 (93.17%), Postives = 307/322 (95.34%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy Swiss-Prot
Match: P26360 (ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas OX=4120 GN=ATPC PE=1 SV=2) HSP 1 Score: 521.9 bits (1343), Expect = 5.0e-147 Identity = 283/326 (86.81%), Postives = 300/326 (92.02%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy Swiss-Prot
Match: Q96250 (ATP synthase subunit gamma, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ATPC PE=1 SV=1) HSP 1 Score: 483.0 bits (1242), Expect = 2.6e-135 Identity = 256/322 (79.50%), Postives = 288/322 (89.44%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy Swiss-Prot
Match: A8LJR5 (ATP synthase gamma chain OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=atpG PE=3 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.3e-41 Identity = 116/294 (39.46%), Postives = 179/294 (60.88%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy Swiss-Prot
Match: Q28TJ7 (ATP synthase gamma chain OS=Jannaschia sp. (strain CCS1) OX=290400 GN=atpG PE=3 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.2e-41 Identity = 116/293 (39.59%), Postives = 172/293 (58.70%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy Swiss-Prot
Match: Q4FP37 (ATP synthase gamma chain OS=Pelagibacter ubique (strain HTCC1062) OX=335992 GN=atpG PE=3 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.1e-40 Identity = 113/292 (38.70%), Postives = 166/292 (56.85%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy TrEMBL
Match: A0A6J1C753 (ATP synthase subunit gamma OS=Momordica charantia OX=3673 GN=LOC111009014 PE=3 SV=1) HSP 1 Score: 572.0 bits (1473), Expect = 1.6e-159 Identity = 304/322 (94.41%), Postives = 312/322 (96.89%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy TrEMBL
Match: A0A5D3BI22 (ATP synthase subunit gamma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001340 PE=3 SV=1) HSP 1 Score: 568.2 bits (1463), Expect = 2.3e-158 Identity = 298/322 (92.55%), Postives = 312/322 (96.89%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy TrEMBL
Match: A0A1S3BMV0 (ATP synthase subunit gamma OS=Cucumis melo OX=3656 GN=LOC103491541 PE=3 SV=1) HSP 1 Score: 568.2 bits (1463), Expect = 2.3e-158 Identity = 298/322 (92.55%), Postives = 312/322 (96.89%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy TrEMBL
Match: A0A0A0LQ90 (ATP synthase subunit gamma OS=Cucumis sativus OX=3659 GN=Csa_1G039160 PE=3 SV=1) HSP 1 Score: 559.3 bits (1440), Expect = 1.0e-155 Identity = 296/322 (91.93%), Postives = 308/322 (95.65%), Query Frame = 0
BLAST of Sed0007546.1 vs. ExPASy TrEMBL
Match: A0A6J1KHJ8 (ATP synthase subunit gamma, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495315 PE=3 SV=1) HSP 1 Score: 558.5 bits (1438), Expect = 1.8e-155 Identity = 300/322 (93.17%), Postives = 307/322 (95.34%), Query Frame = 0
BLAST of Sed0007546.1 vs. TAIR 10
Match: AT2G33040.1 (gamma subunit of Mt ATP synthase ) HSP 1 Score: 483.0 bits (1242), Expect = 1.8e-136 Identity = 256/322 (79.50%), Postives = 288/322 (89.44%), Query Frame = 0
BLAST of Sed0007546.1 vs. TAIR 10
Match: AT4G04640.1 (ATPase, F1 complex, gamma subunit protein ) HSP 1 Score: 107.1 bits (266), Expect = 2.7e-23 Identity = 96/322 (29.81%), Postives = 154/322 (47.83%), Query Frame = 0
BLAST of Sed0007546.1 vs. TAIR 10
Match: AT1G15700.1 (ATPase, F1 complex, gamma subunit protein ) HSP 1 Score: 98.2 bits (243), Expect = 1.3e-20 Identity = 94/347 (27.09%), Postives = 156/347 (44.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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