Sed0006110.1 (mRNA) Chayote v1

Overview


Name	Sed0006110.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Photosystem II CP43 reaction center protein
Location	LG13: 18644222 .. 18645521 (-)
Sequence length	1198
RNA-Seq Expression	Sed0006110.1
Synteny	Sed0006110.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCTGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCTCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCCGGTGGGGAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTGTTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCGGGGGGGGGAGATGTACGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGAGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTTATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTCCGTGCTCCTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTAGACTTGAGTAGGCTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGTGGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCGGCCGCAGGATTTGA

mRNA sequence

AGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCTGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCTCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCCGGTGGGGAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTGTTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCGGGGGGGGGAGATGTACGAAAAATTACCAACTTGACCCTTAGCCCAAGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTTATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTCCGTGCTCCTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTAGACTTGAGTAGGCTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGTGGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCGGCCGCAGGATTTGA

Coding sequence (CDS)

ATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCTCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCCGGTGGGGAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTTAATTTCCTCCGCAGTGTTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTGGGTATTCACTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATGATACCTGGGCTCCGGGGGGGGGAGATGTACGAAAAATTACCAACTTGACCCTTAGCCCAAGTTCCATTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTGAGTTTTACGGGCCGACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAACGTCTTGGAGCTAACGTTGGATCCGCTCAAGGACCTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCGGAGAAGTTATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTCCGTGCTCCTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTAGACTTGAGTAGGCTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGTGGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCGGCCGCAGGATTTGA

Protein sequence

MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLVSYLSFCSRILPIRRSFMACRKGSCSGRRI

Homology

[Close]

BLAST of Sed0006110.1 vs. NCBI nr
Match: YP_005352703.1 (psbC gene product [Ginkgo biloba] >AEX98416.1 photosystem II 44 kDa protein [Ginkgo biloba] >AEX98834.1 photosystem II 44 kDa protein [Ginkgo biloba] >AEX99001.1 photosystem II 44 kDa protein [Ginkgo biloba])

HSP 1 Score: 662.1 bits (1707), Expect = 2.6e-186
Identity = 323/389 (83.03%), Postives = 336/389 (86.38%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGE++DTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHAL+GPETLEESF FFGYVWKDRNKMTTILGIHLILLG+GAFLLV KALYFGGVY
Sbjct: 127 FGGIYHALIGPETLEESFAFFGYVWKDRNKMTTILGIHLILLGVGAFLLVLKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVR+ITNLTL PS                                  SICI 
Sbjct: 187 DTWAPGGGDVRRITNLTLDPSVLFGYLLKSPFGGEGWIVSVDNLEDIIGGHVWLGSICIF 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRA VWSGEAYLSYSLGAL+VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRAFVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 356
           EPLRGPNGLDLS+LKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSKLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. NCBI nr
Match: YP_009477381.1 (photosystem II CP43 chlorophyll apoprotein [Tecomaria capensis] >AVM81925.1 photosystem II CP43 chlorophyll apoprotein [Tecomaria capensis])

HSP 1 Score: 659.8 bits (1701), Expect = 1.3e-185
Identity = 324/365 (88.77%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. NCBI nr
Match: YP_009318793.1 (photosystem II 44 kDa protein [Blakea schlimii] >APA17909.1 photosystem II 44 kDa protein [Blakea schlimii] >QFQ40237.1 photosystem II CP43 chlorophyll apoprotein [Medinilla fengii] >QFQ43428.1 photosystem II CP43 chlorophyll apoprotein [Medinilla petelotii])

HSP 1 Score: 659.1 bits (1699), Expect = 2.2e-185
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. NCBI nr
Match: QFQ46451.1 (photosystem II CP43 chlorophyll apoprotein [Astronia smilacifolia])

HSP 1 Score: 659.1 bits (1699), Expect = 2.2e-185
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. NCBI nr
Match: YP_010047982.1 (photosystem II CP43 chlorophyll apoprotein [Pilea cadierei] >QPK42609.1 photosystem II CP43 chlorophyll apoprotein [Pilea cadierei])

HSP 1 Score: 659.1 bits (1699), Expect = 2.2e-185
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEV+DTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVLDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIVFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. ExPASy Swiss-Prot
Match: Q3C1I3 (Photosystem II CP43 reaction center protein OS=Nicotiana sylvestris OX=4096 GN=psbC PE=3 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 3.8e-188
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 174

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 175 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 234

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 235 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 294

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 295 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 354

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 355 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 414

[Close]

BLAST of Sed0006110.1 vs. ExPASy Swiss-Prot
Match: Q33C41 (Photosystem II CP43 reaction center protein OS=Nicotiana tomentosiformis OX=4098 GN=psbC PE=3 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 3.8e-188
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 55  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 114

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 115 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 174

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 175 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 234

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 235 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 294

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 295 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 354

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 355 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 414

[Close]

BLAST of Sed0006110.1 vs. ExPASy Swiss-Prot
Match: P06413 (Photosystem II CP43 reaction center protein OS=Nicotiana tabacum OX=4097 GN=psbC PE=3 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 3.8e-188
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. ExPASy Swiss-Prot
Match: B1NWE6 (Photosystem II CP43 reaction center protein OS=Manihot esculenta OX=3983 GN=psbC PE=3 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 6.5e-188
Identity = 322/365 (88.22%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. ExPASy Swiss-Prot
Match: Q68S10 (Photosystem II CP43 reaction center protein OS=Panax ginseng OX=4054 GN=psbC PE=3 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 6.5e-188
Identity = 322/365 (88.22%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. ExPASy TrEMBL
Match: H9A972 (Photosystem II CP43 reaction center protein OS=Ginkgo biloba OX=3311 GN=psbC PE=3 SV=1)

HSP 1 Score: 662.1 bits (1707), Expect = 1.3e-186
Identity = 323/389 (83.03%), Postives = 336/389 (86.38%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGE++DTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHAL+GPETLEESF FFGYVWKDRNKMTTILGIHLILLG+GAFLLV KALYFGGVY
Sbjct: 127 FGGIYHALIGPETLEESFAFFGYVWKDRNKMTTILGIHLILLGVGAFLLVLKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVR+ITNLTL PS                                  SICI 
Sbjct: 187 DTWAPGGGDVRRITNLTLDPSVLFGYLLKSPFGGEGWIVSVDNLEDIIGGHVWLGSICIF 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRA VWSGEAYLSYSLGAL+VFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRAFVWSGEAYLSYSLGALAVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGE+IFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 356
           EPLRGPNGLDLS+LKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSKLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. ExPASy TrEMBL
Match: A0A2P1GAE9 (Photosystem II CP43 reaction center protein OS=Tecomaria capensis OX=140035 GN=psbC PE=3 SV=1)

HSP 1 Score: 659.8 bits (1701), Expect = 6.3e-186
Identity = 324/365 (88.77%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. ExPASy TrEMBL
Match: A0A5P8GU18 (Photosystem II CP43 reaction center protein OS=Astronia smilacifolia OX=119874 GN=psbC PE=3 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 1.1e-185
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. ExPASy TrEMBL
Match: A0A6H0EG87 (Photosystem II CP43 reaction center protein OS=Cassia brewsteri OX=1268648 GN=psbC PE=3 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 1.1e-185
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. ExPASy TrEMBL
Match: A0A5P8GCS2 (Photosystem II CP43 reaction center protein OS=Medinilla fengii OX=2136592 GN=psbC PE=3 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 1.1e-185
Identity = 323/365 (88.49%), Postives = 326/365 (89.32%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICIL
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIL 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

[Close]

BLAST of Sed0006110.1 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 651.7 bits (1680), Expect = 3.3e-187
Identity = 320/365 (87.67%), Postives = 323/365 (88.49%), Query Frame = 0


Query: 1   MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 60
           MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG
Sbjct: 67  MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLG 126

Query: 61  FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVY 120
           FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLG+GAFLLVFKALYFGGVY
Sbjct: 127 FGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVY 186

Query: 121 DTWAPGGGDVRKITNLTLSPS----------------------------------SICIL 180
           DTWAPGGGDVRKITNLTLSPS                                  SICI 
Sbjct: 187 DTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIF 246

Query: 181 GGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTG 240
           GGIWHILTKPFAWARRALVWSGEAYLSYSL ALSV GFIACCFVWFNNTAYPSEFYGPTG
Sbjct: 247 GGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFVWFNNTAYPSEFYGPTG 306

Query: 241 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 300
           PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL
Sbjct: 307 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWL 366

Query: 301 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPKKLV 332
           EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSP+  +
Sbjct: 367 EPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL 426

The following BLAST results are available for this feature:

BLAST of Sed0006110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_005352703.1	2.6e-186	83.03	psbC gene product [Ginkgo biloba] >AEX98416.1 photosystem II 44 kDa protein [Gin...	[more]
YP_009477381.1	1.3e-185	88.77	photosystem II CP43 chlorophyll apoprotein [Tecomaria capensis] >AVM81925.1 phot...	[more]
YP_009318793.1	2.2e-185	88.49	photosystem II 44 kDa protein [Blakea schlimii] >APA17909.1 photosystem II 44 kD...	[more]
QFQ46451.1	2.2e-185	88.49	photosystem II CP43 chlorophyll apoprotein [Astronia smilacifolia]	[more]
YP_010047982.1	2.2e-185	88.49	photosystem II CP43 chlorophyll apoprotein [Pilea cadierei] >QPK42609.1 photosys...	[more]

BLAST of Sed0006110.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3C1I3	3.8e-188	88.49	Photosystem II CP43 reaction center protein OS=Nicotiana sylvestris OX=4096 GN=p...	[more]
Q33C41	3.8e-188	88.49	Photosystem II CP43 reaction center protein OS=Nicotiana tomentosiformis OX=4098...	[more]
P06413	3.8e-188	88.49	Photosystem II CP43 reaction center protein OS=Nicotiana tabacum OX=4097 GN=psbC...	[more]
B1NWE6	6.5e-188	88.22	Photosystem II CP43 reaction center protein OS=Manihot esculenta OX=3983 GN=psbC...	[more]
Q68S10	6.5e-188	88.22	Photosystem II CP43 reaction center protein OS=Panax ginseng OX=4054 GN=psbC PE=...	[more]

BLAST of Sed0006110.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
H9A972	1.3e-186	83.03	Photosystem II CP43 reaction center protein OS=Ginkgo biloba OX=3311 GN=psbC PE=...	[more]
A0A2P1GAE9	6.3e-186	88.77	Photosystem II CP43 reaction center protein OS=Tecomaria capensis OX=140035 GN=p...	[more]
A0A5P8GU18	1.1e-185	88.49	Photosystem II CP43 reaction center protein OS=Astronia smilacifolia OX=119874 G...	[more]
A0A6H0EG87	1.1e-185	88.49	Photosystem II CP43 reaction center protein OS=Cassia brewsteri OX=1268648 GN=ps...	[more]
A0A5P8GCS2	1.1e-185	88.49	Photosystem II CP43 reaction center protein OS=Medinilla fengii OX=2136592 GN=ps...	[more]

BLAST of Sed0006110.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	3.3e-187	87.67	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 142..332 e-value: 5.1E-56 score: 190.4 coord: 1..141 e-value: 1.7E-36 score: 126.0
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..330
IPR044900	Photosystem II CP43 reaction centre protein superfamily	GENE3D	1.10.10.670	photosystem ii from thermosynechococcus elongatus	coord: 204..299 e-value: 1.0E-57 score: 193.8
None	No IPR available	PANTHER	PTHR33180:SF16	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..330
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..331

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0006110	Sed0006110	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006110.1-exon	Sed0006110.1-exon-LG13:18644222..18644868	exon
Sed0006110.1-exon	Sed0006110.1-exon-LG13:18644971..18645521	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006110.1-cds	Sed0006110.1-cds-LG13:18644222..18644868	CDS
Sed0006110.1-cds	Sed0006110.1-cds-LG13:18644971..18645391	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006110.1-five_prime_utr	Sed0006110.1-five_prime_utr-LG13:18645392..18645521	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0006110.1	Sed0006110.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding