Sed0006006.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTTTTTATATAAATACCAAATCGCAGTTCGCAGGGGCACATATCTTCACGCTCGCGACTTGCAGAGGAAGTTTTCTTGAAGAAGAAGAAAAATGGAGTCATCGAAGACAATCGCCCATGAAATCGGAGGGATCCAGAACGATGCGCTTCGATTCGGCCTCCATGGCGTCAAGAGCGACCTCCTCGGATCTCACCCCGTCGAATCCATCTACGAATCTGTAATCTTTCGCTCTTTGTCGCCGTTTTATTCATTCTGGAAAAAAGTGAAATGGAAGTAAATTTCTTCTATCTAAGTTTCCCTATTTGATTTCTGTTCGGGTTATCTGTAATTAGGGTTTGTTATTAGGGGATAGAATCTAGGGTGGAGGTAGTTGATGAACAACCCTTTGCTCTAGTTGCTCGTATTAGGAACTTGTTTCTTGAGATTAGCATTGATTCATCTTTAATGTCTGATCTTGAGATTCATATCTGACTCTTCATGCTGAAATGTGGGTCACATAGTTTTTTTTTTTCTCTGAAACAAGGGTAGCCACGCCTGTCCCTAGGCCACGCACCAGGAGACATCGAAAGAATAATGTCACAGCTGAATCTCGAACCTGGAACCTTGAGGGGAGCATACCCTCAAAGCCCAAGTCTTCAACGATTGTGCCACCACTTGGGGACGCATCACATAGTGATTTATGAGTTTAGGGCACTGACGTGAATAGCCTAGGATCTGTTCTCAATTTTCTATTTGGATGGCTTTCCTCTTTTTCTTTTCTTTTTTTTTTCTCTCTTCATTTGCTAATAGATTTGTTTATACTAGAATATATTCCTTATGGCAGCACCAGAGAACATTAGTTTGCACTCAGAACAGTTATATATATGGGATTAACACAAATGTTTTCTAATCATCCGAGACATTGAATTTGGTTTAGTTGCATAATAACCGTGAGACATCTATGAAGATTGGTGTAAAAAGGTTAACTAGTTTGTGAGAACAATTTATTTCCTTTTGATGAATGTATATACTGGTTTTCTCGATTTAGACAAGGAGAACAGAAGAGGAGATGAAAAGGAAAATTCTTGTGAATACATATGGGTCTGCTTTTCCACTGAAGATGGATTTGGACAGGCAAATTCTTTCTCGGTATGGTTAATTTCCTTTCTTTTCATTCTTGCTGGATTCTGTATTTGCAACTTATTTATAATTGTAGTCAATAATCACTTCGTTAATTGTTGTTTTATAGTATGATCTAGTGGAGAGGAAAAGGCCACACTTCACTCCACTGACTCTTCTGCCTCATGTGATTTGCCTTAATAACTCATAAGCATGTTAAATTTGTTCTTTCTAGCCCCAAGTATATGGCATGGCCTAAATAGATTTAACCCTTTTTTCTAAGATAGATAAATAGATTTAACTTTTTGAATTTTGATGCAGTGAAGGGATCTTTTTGTTCTTTTCTCCAATAGACCATTCTGTTGTAATCGTCACGAACACTGGAATGTGGTGGGAGCCCTTTTTCCCATCATTCCTTGATATGTTAGCGACATGAATATATAGGACGTCTCTAGTGAAATTGATGTATGATGTTTCATGAATTTCACTGGGATACCCTAATCTGACCTCTGCTTTTCTTTTCTTTTCTCCAACATGTTGACTTGTGATGCCAAGATAAGCTAATATATGCTGTTTGTGTGTAGTTGGAACTTGAAAATCATTGCTAATATAATTTCTACATAAATTCAATGCTTATGCAGATTTCAAAGGCCTCCAGGACCTATTCCATCTTCAATGCTGGGTTTGGAGGCTCTTACTGGAAGCTTGGATGACTTTGGCTTTGAAGATTATCTAAATGGTAAAATGAGAATTTTTTTAGTCACCTTGATCCAAATAACACATCTGATTCTTCTGTTCACTGCATTCTTTTGCATCATTGATGAGAGCTTTCAAATTTCAATAACCTTAAACAGTTCTTTTAATCTTAAGAACGTGTTTTTTTACTCTTATCAAATTATCTGGCATTGGTGGGATAATTAAATATAAGGATCACCTTAAAATCCCTTGTTTTTTTTTTGTTTTCCGGATTGAAAGTTTGGGCTGGGCGTGGAGCAAAGCTCCAATTTCCAGCTATATATATTAGGATCTTATTCCTCAGATTTAAGCATTCCTCGTCCTTAAAGGGTGGTGCGGTGGTTGAAAGTTTGAGATTTGAAGGCGTGTTCTCTCAAAGTTTCAGGCCACTTATAATATTAATTTGTAGACACCTCCTGTGTCTTCATTCCTTCAATGTCTCTCGGTGCTCGGCTTAGGGGCAGGCATGTTACTACTTGGAGCAAAGTTTCAATTTTTTTTTTCAAAAAAGAAAAGGTTTAAGCATTCATCCTCAAATGCTACTAGCATGAATTGCATTAATTCCCTATTTGATGAAGTTCGCAAGACATTCCACCGCTTCCATATTTCTCACTATAATGAATCTCGATTATCTAGTCTTGTCGTGTTTTCGCCATTATATTATAGATAATAGTCTCTGCTGGTGTTTACTTACAATTTATGTCAACGTCATTTGCAGACCCTAGGGAGTCTGAATCTTTGAGGCCGTTGGACATGCACCATGGAATGGAAGTCCGCCTTGGCCTTTCCAAAGGACCTGTTTGCCCAAGTTTCATGTAACCAAATGGGCACTACATCCAGAACACAGTCCATCTTACTCAACAATTTCATTATGGGGCCTTAGTTTCCCCATAATTTTACTGGCATCTCTGTTTGTTTGCTGGTTGGGACATGTTGCTTCTTATGAGTTGAACTTTTAGCTTCATAGTTCTGTGATAGGTTTGTTATCTGAACTTTGTTTGATTTCTTCTAAATATCGAACTCTATCTTTCTTTA TGTTTTTATATAAATACCAAATCGCAGTTCGCAGGGGCACATATCTTCACGCTCGCGACTTGCAGAGGAAGTTTTCTTGAAGAAGAAGAAAAATGGAGTCATCGAAGACAATCGCCCATGAAATCGGAGGGATCCAGAACGATGCGCTTCGATTCGGCCTCCATGGCGTCAAGAGCGACCTCCTCGGATCTCACCCCGTCGAATCCATCTACGAATCTACAAGGAGAACAGAAGAGGAGATGAAAAGGAAAATTCTTGTGAATACATATGGGTCTGCTTTTCCACTGAAGATGGATTTGGACAGGCAAATTCTTTCTCGATTTCAAAGGCCTCCAGGACCTATTCCATCTTCAATGCTGGGTTTGGAGGCTCTTACTGGAAGCTTGGATGACTTTGGCTTTGAAGATTATCTAAATGACCCTAGGGAGTCTGAATCTTTGAGGCCGTTGGACATGCACCATGGAATGGAAGTCCGCCTTGGCCTTTCCAAAGGACCTGTTTGCCCAAGTTTCATGTAACCAAATGGGCACTACATCCAGAACACAGTCCATCTTACTCAACAATTTCATTATGGGGCCTTAGTTTCCCCATAATTTTACTGGCATCTCTGTTTGTTTGCTGGTTGGGACATGTTGCTTCTTATGAGTTGAACTTTTAGCTTCATAGTTCTGTGATAGGTTTGTTATCTGAACTTTGTTTGATTTCTTCTAAATATCGAACTCTATCTTTCTTTA ATGGAGTCATCGAAGACAATCGCCCATGAAATCGGAGGGATCCAGAACGATGCGCTTCGATTCGGCCTCCATGGCGTCAAGAGCGACCTCCTCGGATCTCACCCCGTCGAATCCATCTACGAATCTACAAGGAGAACAGAAGAGGAGATGAAAAGGAAAATTCTTGTGAATACATATGGGTCTGCTTTTCCACTGAAGATGGATTTGGACAGGCAAATTCTTTCTCGATTTCAAAGGCCTCCAGGACCTATTCCATCTTCAATGCTGGGTTTGGAGGCTCTTACTGGAAGCTTGGATGACTTTGGCTTTGAAGATTATCTAAATGACCCTAGGGAGTCTGAATCTTTGAGGCCGTTGGACATGCACCATGGAATGGAAGTCCGCCTTGGCCTTTCCAAAGGACCTGTTTGCCCAAGTTTCATGTAA MESSKTIAHEIGGIQNDALRFGLHGVKSDLLGSHPVESIYESTRRTEEEMKRKILVNTYGSAFPLKMDLDRQILSRFQRPPGPIPSSMLGLEALTGSLDDFGFEDYLNDPRESESLRPLDMHHGMEVRLGLSKGPVCPSFM Homology
BLAST of Sed0006006.1 vs. NCBI nr
Match: XP_022989933.1 (cyclin-B1-2-like [Cucurbita maxima]) HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73 Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of Sed0006006.1 vs. NCBI nr
Match: KAG7033243.1 (Cyclin-B1-2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 284.6 bits (727), Expect = 4.5e-73 Identity = 137/141 (97.16%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of Sed0006006.1 vs. NCBI nr
Match: XP_022956483.1 (cyclin-B1-2-like [Cucurbita moschata]) HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72 Identity = 136/141 (96.45%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of Sed0006006.1 vs. NCBI nr
Match: XP_023541108.1 (cyclin-B1-2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72 Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 0
BLAST of Sed0006006.1 vs. NCBI nr
Match: XP_038889455.1 (cyclin-B1-2-like [Benincasa hispida]) HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72 Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy Swiss-Prot
Match: Q0DWQ7 (Cyclin-B1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCB1-2 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 4.0e-24 Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy Swiss-Prot
Match: Q55G18 (Proteasome maturation protein homolog OS=Dictyostelium discoideum OX=44689 GN=pomp PE=3 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13 Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy Swiss-Prot
Match: Q3SZV5 (Proteasome maturation protein OS=Bos taurus OX=9913 GN=POMP PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12 Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy Swiss-Prot
Match: Q9Y244 (Proteasome maturation protein OS=Homo sapiens OX=9606 GN=POMP PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11 Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy Swiss-Prot
Match: Q9CQT5 (Proteasome maturation protein OS=Mus musculus OX=10090 GN=Pomp PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11 Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy TrEMBL
Match: A0A6J1JRS1 (cyclin-B1-2-like OS=Cucurbita maxima OX=3661 GN=LOC111486973 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 9.8e-74 Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy TrEMBL
Match: A0A6J1GWZ3 (cyclin-B1-2-like OS=Cucurbita moschata OX=3662 GN=LOC111458201 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 6.3e-73 Identity = 136/141 (96.45%), Postives = 140/141 (99.29%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy TrEMBL
Match: A0A6J1BZ23 (cyclin-B1-2-like OS=Momordica charantia OX=3673 GN=LOC111006772 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72 Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy TrEMBL
Match: A0A0A0KUK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643970 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 9.2e-72 Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 0
BLAST of Sed0006006.1 vs. ExPASy TrEMBL
Match: A0A5D3BR37 (Cyclin-B1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001840 PE=4 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71 Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 0
BLAST of Sed0006006.1 vs. TAIR 10
Match: AT5G38650.1 (Proteasome maturation factor UMP1 ) HSP 1 Score: 241.5 bits (615), Expect = 4.1e-64 Identity = 110/141 (78.01%), Postives = 129/141 (91.49%), Query Frame = 0
BLAST of Sed0006006.1 vs. TAIR 10
Match: AT5G38660.2 (acclimation of photosynthesis to environment ) HSP 1 Score: 241.5 bits (615), Expect = 4.1e-64 Identity = 110/141 (78.01%), Postives = 129/141 (91.49%), Query Frame = 0
BLAST of Sed0006006.1 vs. TAIR 10
Match: AT1G67250.1 (Proteasome maturation factor UMP1 ) HSP 1 Score: 234.6 bits (597), Expect = 5.0e-62 Identity = 103/141 (73.05%), Postives = 127/141 (90.07%), Query Frame = 0
BLAST of Sed0006006.1 vs. TAIR 10
Match: AT1G62920.1 (CONTAINS InterPro DOMAIN/s: Proteasome maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana protein match is: Proteasome maturation factor UMP1 (TAIR:AT1G67250.1); Has 70 Blast hits to 70 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 60.8 bits (146), Expect = 9.8e-10 Identity = 34/71 (47.89%), Postives = 37/71 (52.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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