Sed0005520.1 (mRNA) Chayote v1

Overview


Name	Sed0005520.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	mitochondrial substrate carrier family protein ucpB isoform X2
Location	LG07: 2736296 .. 2737914 (-)
Sequence length	258
RNA-Seq Expression	Sed0005520.1
Synteny	Sed0005520.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGAATGGTTTGTGAGGAGGGACTACAAGCTATGGCCAGAGCAGGTGCTTTGACAGCATCTCGACGGGTGACATACGATGAATCTATGCAGGTCTACTTCGAAGCGCGTCCTTTTCATCTCGAATATGCACAAAGTATGTATGCATGTGTTGTAGTTTGCGAGCTTATTGCTGCTTATGTCTTTTTTTATTCTTAAGGTTCTACCTTTTATGTTTTTTGCAGGTTTTAGTAAAGTGGACACGCTTACAAGAAGGATTTCTTTTGCATCTCACGTATGAAACTATGAACTATCCAATGTTCTTTCTATCTATTTCACTTCCTAATTCTTTTGAGTCTTAAAATTCATTTAGGATAAAAAAAAAATGAAATACTCCCTGATGGAAAATGTGCTGTTCAAGGTAGTTTACTATCATACTAACAGAAAGTCAGTTAAATCTTGATTGATTTCTCATACTTTATACCGAGCCCTTGTGAAGCTCAAGACAGTACCAATTGACATGATTAAAACTCGTCTTCGGTTACAACGCGAGTCTAACAGATCTACAAGTTACAAGAATGGACTTCATTGTGCATATCAGGTAAATAACCTGCCATTTCCCCTCTCCTTGGTTGTCTTGTATGTATCTAAATGTATTCTTGAAATGGAGAGTATCTAAATGTATTCTTGAAATGGAGAGTTGTATATATTTAGGATTTACATGCCTAAGAATGTGATTGCTTATCCTTTCACATTTAAATCCATGCATTTTTCTGCATTACTTATAATGTCAGCACCCATGTAGAAGTGCCAAATTTATGCAGTACTAAGCAAGCAAAAATTTCCCCTCCCCCAGGCCCTAACTGTAATAGTATTCATTATTTTTTTAAACCGGGTAACCACGCCCGTCTCTAGGCCAGGCACCGAAAGACATCGAAGGAATGGAGACACTAAAGGTGTCTACAAATTAATGTCACAAGTGAGTCTCGAACTTGAAACCTTGAGGGGAGGGCAATATTCATTATATTTTATATTAAAGTAACTATCTTGCGGCATAATTTCATCCAAGTTCATAGTATAATCATAGTGTTGCAATAATGATGTCTTTACTGATACATTTTTTTTTATTTAATGGGTTATTTTTATTTATCTCGCTGAAGGTATCCAGAGGCCCACTCTTTACATTCGGCTGAAAATGCAAGTGTTCTGCAAATTTGTAGATGATTATTGTCCACTGATGAAGTCTCAACCATATTGATTCTTACTTTTTTTACACCTATAGCTTGATCTTGAACAAAAAATAAAATGAATTCTCGTACTCAGTTGGAAAGTAAATGTACTTGAATGTCTATGTTCAAACTTTTTAGAACTTGAATTGAATTCTCAACAATGTGGGTACCATCATACATACACTGATACACATGCCAAAAAAAAATGATACTCCTGCTTCATCGCCTTTGCAATTTCGATTGTTATTCTTGTCGACTTGTCGTGCCATTTGGTGCATTTGAATATTTGAATCTATCTCTATCTTGGTGGTGAACAACTGATCTTTGTAGGTAGTTTTTGTTCAATAGGGAAGACGTCTTTTTACTGGGAATGCTTTCTTTACTTTTATCTTTTTTCATTCTTGCTAA

mRNA sequence

ATGTCCAGAATGGTTTGTGAGGAGGGACTACAAGCTATGGCCAGAGCAGGTGCTTTGACAGCATCTCGACGGGTGACATACGATGAATCTATGCAGCTCAAGACAGTACCAATTGACATGATTAAAACTCGTCTTCGGTTACAACGCGAGTCTAACAGATCTACAAGTTACAAGAATGGACTTCATTGTGCATATCAGGGAAGACGTCTTTTTACTGGGAATGCTTTCTTTACTTTTATCTTTTTTCATTCTTGCTAA

Coding sequence (CDS)

ATGTCCAGAATGGTTTGTGAGGAGGGACTACAAGCTATGGCCAGAGCAGGTGCTTTGACAGCATCTCGACGGGTGACATACGATGAATCTATGCAGCTCAAGACAGTACCAATTGACATGATTAAAACTCGTCTTCGGTTACAACGCGAGTCTAACAGATCTACAAGTTACAAGAATGGACTTCATTGTGCATATCAGGGAAGACGTCTTTTTACTGGGAATGCTTTCTTTACTTTTATCTTTTTTCATTCTTGCTAA

Protein sequence

MSRMVCEEGLQAMARAGALTASRRVTYDESMQLKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQGRRLFTGNAFFTFIFFHSC

Homology

[Close]

BLAST of Sed0005520.1 vs. NCBI nr
Match: XP_038896319.1 (mitochondrial substrate carrier family protein ucpB isoform X2 [Benincasa hispida] >XP_038896320.1 mitochondrial substrate carrier family protein ucpB isoform X2 [Benincasa hispida] >XP_038896322.1 mitochondrial substrate carrier family protein ucpB isoform X2 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 52/101 (51.49%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES +                    
Sbjct: 109 MSRIVSEEGLKALWKGVGPAMARAGALTASQLATYDESKRVLVKWTPLQEGFPLHLISST 168

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES R+ SYKNGLHCAYQ
Sbjct: 169 VAGVVSTLMTTPIDMIKTRLMLQRESKRAGSYKNGLHCAYQ 209

[Close]

BLAST of Sed0005520.1 vs. NCBI nr
Match: XP_038896316.1 (mitochondrial substrate carrier family protein ucpB isoform X1 [Benincasa hispida] >XP_038896317.1 mitochondrial substrate carrier family protein ucpB isoform X1 [Benincasa hispida] >XP_038896318.1 mitochondrial substrate carrier family protein ucpB isoform X1 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 52/101 (51.49%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES +                    
Sbjct: 169 MSRIVSEEGLKALWKGVGPAMARAGALTASQLATYDESKRVLVKWTPLQEGFPLHLISST 228

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES R+ SYKNGLHCAYQ
Sbjct: 229 VAGVVSTLMTTPIDMIKTRLMLQRESKRAGSYKNGLHCAYQ 269

[Close]

BLAST of Sed0005520.1 vs. NCBI nr
Match: XP_022150173.1 (mitochondrial substrate carrier family protein ucpB isoform X2 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 51/101 (50.50%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES Q                    
Sbjct: 109 MSRIVTEEGLKALWKGVGPAMARAGALTASQLATYDESKQVLVKWTPLQEGFPLHLISSA 168

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES ++ +YKNGLHCAYQ
Sbjct: 169 VAGVVSTLMTTPIDMIKTRLMLQRESKKAGNYKNGLHCAYQ 209

[Close]

BLAST of Sed0005520.1 vs. NCBI nr
Match: XP_031744483.1 (mitochondrial substrate carrier family protein ucpB isoform X4 [Cucumis sativus] >XP_031744484.1 mitochondrial substrate carrier family protein ucpB isoform X4 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 52/101 (51.49%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES Q                    
Sbjct: 109 MSRIVSEEGLKALWKGVGPAMARAGALTASQLATYDESKQLLVKWTPLQEGFSLHLISST 168

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES R  +YKNGLHCAYQ
Sbjct: 169 VAGVVSTLMTTPIDMIKTRLMLQRESKRVGNYKNGLHCAYQ 209

[Close]

BLAST of Sed0005520.1 vs. NCBI nr
Match: XP_031744482.1 (mitochondrial substrate carrier family protein ucpB isoform X2 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 52/101 (51.49%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES Q                    
Sbjct: 166 MSRIVSEEGLKALWKGVGPAMARAGALTASQLATYDESKQLLVKWTPLQEGFSLHLISST 225

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES R  +YKNGLHCAYQ
Sbjct: 226 VAGVVSTLMTTPIDMIKTRLMLQRESKRVGNYKNGLHCAYQ 266

[Close]

BLAST of Sed0005520.1 vs. ExPASy TrEMBL
Match: A0A0A0K8Y5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390160 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 52/101 (51.49%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES Q                    
Sbjct: 156 MSRIVSEEGLKALWKGVGPAMARAGALTASQLATYDESKQLLVKWTPLQEGFSLHLISST 215

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES R  +YKNGLHCAYQ
Sbjct: 216 VAGVVSTLMTTPIDMIKTRLMLQRESKRVGNYKNGLHCAYQ 256

[Close]

BLAST of Sed0005520.1 vs. ExPASy TrEMBL
Match: A0A6J1D8R0 (mitochondrial substrate carrier family protein ucpB isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018417 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 51/101 (50.50%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES Q                    
Sbjct: 109 MSRIVTEEGLKALWKGVGPAMARAGALTASQLATYDESKQVLVKWTPLQEGFPLHLISSA 168

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES ++ +YKNGLHCAYQ
Sbjct: 169 VAGVVSTLMTTPIDMIKTRLMLQRESKKAGNYKNGLHCAYQ 209

[Close]

BLAST of Sed0005520.1 vs. ExPASy TrEMBL
Match: A0A6J1DA08 (mitochondrial substrate carrier family protein ucpB isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018417 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 51/101 (50.50%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES Q                    
Sbjct: 169 MSRIVTEEGLKALWKGVGPAMARAGALTASQLATYDESKQVLVKWTPLQEGFPLHLISSA 228

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES ++ +YKNGLHCAYQ
Sbjct: 229 VAGVVSTLMTTPIDMIKTRLMLQRESKKAGNYKNGLHCAYQ 269

[Close]

BLAST of Sed0005520.1 vs. ExPASy TrEMBL
Match: A0A1S3BQV6 (mitochondrial substrate carrier family protein ucpB isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492725 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 51/101 (50.50%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES +                    
Sbjct: 109 MSRIVSEEGLKALWKGVGPAMARAGALTASQLATYDESKRVLVKWTPLQEGFPLHLISST 168

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES R+ +YKNGLHCAYQ
Sbjct: 169 VAGVVSTLMTTPIDMIKTRLMLQRESKRAGNYKNGLHCAYQ 209

[Close]

BLAST of Sed0005520.1 vs. ExPASy TrEMBL
Match: A0A1S3BSK0 (mitochondrial substrate carrier family protein ucpB isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492725 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 51/101 (50.50%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 1   MSRMVCEEGLQ--------AMARAGALTASRRVTYDESMQ-------------------- 60
           MSR+V EEGL+        AMARAGALTAS+  TYDES +                    
Sbjct: 170 MSRIVSEEGLKALWKGVGPAMARAGALTASQLATYDESKRVLVKWTPLQEGFPLHLISST 229

Query: 61  -------LKTVPIDMIKTRLRLQRESNRSTSYKNGLHCAYQ 67
                  L T PIDMIKTRL LQRES R+ +YKNGLHCAYQ
Sbjct: 230 VAGVVSTLMTTPIDMIKTRLMLQRESKRAGNYKNGLHCAYQ 270

[Close]

BLAST of Sed0005520.1 vs. TAIR 10
Match: AT4G03115.1 (Mitochondrial substrate carrier family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-07
Identity = 32/82 (39.02%), Postives = 41/82 (50.00%), Query Frame = 0


Query: 12  AMARAGALTASRRVTYDESMQ---------------------------LKTVPIDMIKTR 67
           AM RA ALTAS+  TYDE+ +                           L T P+DMIKTR
Sbjct: 189 AMVRAAALTASQLATYDEAKRILVKRTSLEEGFHLHLCSSVVAGLVSTLITAPMDMIKTR 248

The following BLAST results are available for this feature:

BLAST of Sed0005520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896319.1	1.3e-11	51.49	mitochondrial substrate carrier family protein ucpB isoform X2 [Benincasa hispid...	[more]
XP_038896316.1	1.3e-11	51.49	mitochondrial substrate carrier family protein ucpB isoform X1 [Benincasa hispid...	[more]
XP_022150173.1	2.3e-11	50.50	mitochondrial substrate carrier family protein ucpB isoform X2 [Momordica charan...	[more]
XP_031744483.1	2.3e-11	51.49	mitochondrial substrate carrier family protein ucpB isoform X4 [Cucumis sativus]...	[more]
XP_031744482.1	2.3e-11	51.49	mitochondrial substrate carrier family protein ucpB isoform X2 [Cucumis sativus]	[more]

BLAST of Sed0005520.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005520.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Y5	1.1e-11	51.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390160 PE=3 SV=1	[more]
A0A6J1D8R0	1.1e-11	50.50	mitochondrial substrate carrier family protein ucpB isoform X2 OS=Momordica char...	[more]
A0A6J1DA08	1.1e-11	50.50	mitochondrial substrate carrier family protein ucpB isoform X1 OS=Momordica char...	[more]
A0A1S3BQV6	1.4e-11	50.50	mitochondrial substrate carrier family protein ucpB isoform X2 OS=Cucumis melo O...	[more]
A0A1S3BSK0	1.4e-11	50.50	mitochondrial substrate carrier family protein ucpB isoform X1 OS=Cucumis melo O...	[more]

BLAST of Sed0005520.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03115.1	2.1e-07	39.02	Mitochondrial substrate carrier family protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0005520	Sed0005520	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005520.1-exon	Sed0005520.1-exon-LG07:2736296..2736355	exon
Sed0005520.1-exon	Sed0005520.1-exon-LG07:2737332..2737433	exon
Sed0005520.1-exon	Sed0005520.1-exon-LG07:2737819..2737914	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005520.1-cds	Sed0005520.1-cds-LG07:2736296..2736355	CDS
Sed0005520.1-cds	Sed0005520.1-cds-LG07:2737332..2737433	CDS
Sed0005520.1-cds	Sed0005520.1-cds-LG07:2737819..2737914	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0005520.1	Sed0005520.1-protein	polypeptide