Sed0005282.1 (mRNA) Chayote v1

Overview


Name	Sed0005282.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Retrotransposon protein
Location	LG10: 9220809 .. 9221882 (+)
Sequence length	1005
RNA-Seq Expression	Sed0005282.1
Synteny	Sed0005282.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACATTTCGAGGAGGGTATCTCACACAATTGCAGATGATGATGAGAGAAAAAAATTCCAAGTTCTAATCTATCCACCGACACAATTGAAGGAAAAATACGATCATTAAAGAAAACATACCAAGCAATTTCTGAAATGTTAGGACCAACTTGTAGTGGATTTGGTTGGAATCCAGAACTAAAATGTGTTTCTGCTGAGCAGGAAGTTTATGACTATTGGGTAAAGGTTAGTTTCATATTTATGATGTTTGTTAATGTTAACCTTACATATATCTTGATGTTGTTCGCTTTTTAGTCTCACCCAGCTGCGAAAGGATTGAACAACAAGCCTTTTCCCCACTATGATGAGTTGTCCTTCATATTTGGTAAGGAACGTGCTGGTGGATCAGGTGCTCAGTTGCAAACTGAAATTGGATCAAGTCGAACAGAATTGTTGGAGGAGTTTTCTCTTGACGACTCTCAGGAGTATTATGTCCCCATCCCTCCTTACACTGCCGAAGATGCACCAGTAAAGGGGATTAACAATACACTTGTTAGGACTCAGGTTGGTGGCTCTTCATCTAGTTTAGGCAAAAGGAAAAGAAGTCACCATAAATCAGCAATGGTGAATGTGATCGAAGATGCTATGCAAGTGCAACAATCATACCTGAAGGTTATTTCTGAGTGGTCGAGAGAACAACGTGCTATTGAAGCTACACTACATGAAAGATGTCTGGCCGAGCTAAAGAACCTCCCTGACCTTGATGGACCATTATTCACATATGCCATGAAGCAAGTTTTGGCTAGTGAATTCACTATGGAGTTATTCCTCTCTGTTCCAAAGAAGTTCAAGATGGATTACTTAAAACATTTGTAGTACTTGCCTTTCTTCAGTTCTATTTTCCTCGTCTTTTTAATTTTTCTGTTGTTGTGTTTTTTGGATTTAATATTTTAGACTTTTTTTTGTGGCACCTAGATGGTGTCATTGGTGGTTGAACATCTATTTTACTTTTGAAGGTACCTTGTAGGTGACCTTGAATTATTATCATATCTATGATTCATTTTGTATGTAACCTTTAATTATTATCATATCTACG

mRNA sequence

GACATTTCGAGGAGGGTATCTCACACAATTGCAGATGATGATGAGAGAAAAAAATTCCAAGTTCTAATCTATCCACCGACACAATTGAAGGAAAAATACGATCATTAAAGAAAACATACCAAGCAATTTCTGAAATGTTAGGACCAACTTGTAGTGGATTTGGTTGGAATCCAGAACTAAAATGTGTTTCTGCTGAGCAGGAAGTTTATGACTATTGGGTAAAGTCTCACCCAGCTGCGAAAGGATTGAACAACAAGCCTTTTCCCCACTATGATGAGTTGTCCTTCATATTTGGTAAGGAACGTGCTGGTGGATCAGGTGCTCAGTTGCAAACTGAAATTGGATCAAGTCGAACAGAATTGTTGGAGGAGTTTTCTCTTGACGACTCTCAGGAGTATTATGTCCCCATCCCTCCTTACACTGCCGAAGATGCACCAGTAAAGGGGATTAACAATACACTTGTTAGGACTCAGGTTGGTGGCTCTTCATCTAGTTTAGGCAAAAGGAAAAGAAGTCACCATAAATCAGCAATGGTGAATGTGATCGAAGATGCTATGCAAGTGCAACAATCATACCTGAAGGTTATTTCTGAGTGGTCGAGAGAACAACGTGCTATTGAAGCTACACTACATGAAAGATGTCTGGCCGAGCTAAAGAACCTCCCTGACCTTGATGGACCATTATTCACATATGCCATGAAGCAAGTTTTGGCTAGTGAATTCACTATGGAGTTATTCCTCTCTGTTCCAAAGAAGTTCAAGATGGATTACTTAAAACATTTGTAGTACTTGCCTTTCTTCAGTTCTATTTTCCTCGTCTTTTTAATTTTTCTGTTGTTGTGTTTTTTGGATTTAATATTTTAGACTTTTTTTTGTGGCACCTAGATGGTGTCATTGGTGGTTGAACATCTATTTTACTTTTGAAGGTACCTTGTAGGTGACCTTGAATTATTATCATATCTATGATTCATTTTGTATGTAACCTTTAATTATTATCATATCTACG

Coding sequence (CDS)

ATGTTAGGACCAACTTGTAGTGGATTTGGTTGGAATCCAGAACTAAAATGTGTTTCTGCTGAGCAGGAAGTTTATGACTATTGGGTAAAGTCTCACCCAGCTGCGAAAGGATTGAACAACAAGCCTTTTCCCCACTATGATGAGTTGTCCTTCATATTTGGTAAGGAACGTGCTGGTGGATCAGGTGCTCAGTTGCAAACTGAAATTGGATCAAGTCGAACAGAATTGTTGGAGGAGTTTTCTCTTGACGACTCTCAGGAGTATTATGTCCCCATCCCTCCTTACACTGCCGAAGATGCACCAGTAAAGGGGATTAACAATACACTTGTTAGGACTCAGGTTGGTGGCTCTTCATCTAGTTTAGGCAAAAGGAAAAGAAGTCACCATAAATCAGCAATGGTGAATGTGATCGAAGATGCTATGCAAGTGCAACAATCATACCTGAAGGTTATTTCTGAGTGGTCGAGAGAACAACGTGCTATTGAAGCTACACTACATGAAAGATGTCTGGCCGAGCTAAAGAACCTCCCTGACCTTGATGGACCATTATTCACATATGCCATGAAGCAAGTTTTGGCTAGTGAATTCACTATGGAGTTATTCCTCTCTGTTCCAAAGAAGTTCAAGATGGATTACTTAAAACATTTGTAG

Protein sequence

MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDAPVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMELFLSVPKKFKMDYLKHL

Homology

[Close]

BLAST of Sed0005282.1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-31
Identity = 78/218 (35.78%), Postives = 128/218 (58.72%), Query Frame = 0


Query: 1   MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGG 60
           M GP+CSGFGWN E +C+ AE++++D W+KSHPAAKGL +K FP+YD+LS++FGK+RA G
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAEDAPVKGINNTLVRTQVGGSS- 120
           + ++    +GS+ + +  +   L DS +  +P    T     V    + +   + G +S 
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIP----TMYSQGVHMSPDEMFGIRAGQASE 203

Query: 121 ----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELK 180
               SS+ KRKR   +   V VI   M+     LK I++W +E+RA+E  +  + + +L+
Sbjct: 204 RRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQ 263

Query: 181 NLPDLDGPLFTYAMKQVLASEFTMELFLSVPKKFKMDY 213
           ++P L        M+ +  S   +E FLS+P + K++Y
Sbjct: 264 DIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 297

[Close]

BLAST of Sed0005282.1 vs. NCBI nr
Match: XP_038899283.1 (uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899284.1 uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899285.1 uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899286.1 uncharacterized protein LOC120086622 [Benincasa hispida])

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-29
Identity = 79/218 (36.24%), Postives = 120/218 (55.05%), Query Frame = 0


Query: 1   MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGG 60
           M G  CSGFGWN E +C++AE+E +D WVKSHPA KGL NK F ++D+L+++FGK+ A G
Sbjct: 8   MRGLACSGFGWNEEFQCITAEKETFDGWVKSHPATKGLLNKSFSYFDDLAYVFGKDWATG 67

Query: 61  SGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAEDAPVKGINNTLVRTQVGGSSS 120
            GA++  ++ SS    + E  S DDSQE+          D      + T       G +S
Sbjct: 68  EGAEIPGDMASSVPGCMHEGASTDDSQEH----------DLSQDEFHGTPTGFGFEGDNS 127

Query: 121 SLGKRKRSH-HKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPD 180
             G +++ H + S +V V ++AM      LK I+EWS++Q A E  L  + + +L ++P 
Sbjct: 128 LRGSKRKHHGYHSELVKVFKNAMDFANDQLKSIAEWSKKQHATEVELRAKVVNKLNDIPK 187

Query: 181 LDGPLFTYAMKQVLASEFTMELFLSVPKKFKMDYLKHL 217
           L        M  +  +    E FLS+P   K++Y + L
Sbjct: 188 LQTQQKMKFMNIIFRNVHNTESFLSIPADMKLEYCELL 215

[Close]

BLAST of Sed0005282.1 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-29
Identity = 77/211 (36.49%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 8   GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQT 67
           GFGWN + KC+ AE+EV+D WVKSHP AKGL NKP PHYD+L+  FGK+RA G+      
Sbjct: 4   GFGWNDDHKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPV 63

Query: 68  EIGSSRTELLEEFSLDDSQEYYVPIPPY--TAEDAPVKGINNTLVRTQVGGSSSSLGKRK 127
           ++ SS    + E +  ++Q++Y+P PP   T EDA  + + NT       G+SS   KRK
Sbjct: 64  DMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRK 123

Query: 128 RSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFT 187
           RS + S MV+V+   M++Q ++L+ ++ W  ++   +    +    +LK +P+L+   + 
Sbjct: 124 RSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEANDYV 183

Query: 188 YAMKQVLASEFTMELFLSVPKKFKMDYLKHL 217
             +  ++ +      FL VP +FK  +   L
Sbjct: 184 RLVGILMTNVKKSISFLEVPIEFKKMFCMQL 213

[Close]

BLAST of Sed0005282.1 vs. NCBI nr
Match: XP_031744343.1 (uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharacterized protein LOC116404989 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 8.8e-28
Identity = 77/216 (35.65%), Postives = 120/216 (55.56%), Query Frame = 0


Query: 1   MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGG 60
           M GP+C GFGWN ++KC+ AE+E++D WV+SHPAAKGL NK FP+YDEL+++FGK+RA G
Sbjct: 34  MRGPSCGGFGWNDDVKCIVAEKELFDNWVRSHPAAKGLLNKLFPYYDELAYVFGKDRAMG 93

Query: 61  SGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPP----YTAEDAPVKGINNTLVRTQVGG 120
           + A+   ++GS+     EEF   D  +   P         ++D   +    T  RT   G
Sbjct: 94  THAETFADVGSNVPPGFEEFPPVDLNDMEFPSMSSHRFNMSQDDIARPSRGTDSRTTSSG 153

Query: 121 SSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNL 180
           S     KR+R        +VI+DAM +Q   L++I+EW R     E+ +    +  L+ +
Sbjct: 154 S-----KRRRGGQTLETADVIKDAMALQTDELRLIAEWPRLALEDESRVRREVVRALRAI 213

Query: 181 PDLDGPLFTYAMKQVLASEFTMELFLSVPKKFKMDY 213
           P+L         + ++ +   M+ FL +  + K+DY
Sbjct: 214 PELSRLDMAQCNRILMNNLTDMKGFLELSNEEKLDY 244

[Close]

BLAST of Sed0005282.1 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-26
Identity = 72/186 (38.71%), Postives = 109/186 (58.60%), Query Frame = 0


Query: 1   MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGG 60
           M GP+CSGFGWN + KC+ AE+E +D WV+SHPAAKGL NKPFP+YD+ +++FGK+RA G
Sbjct: 84  MRGPSCSGFGWNDDAKCIIAEKEFFDNWVRSHPAAKGLLNKPFPYYDKFAYVFGKDRAMG 143

Query: 61  SGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPP-----YTAED--APVKGINNTLVRTQ 120
           +  +   ++GS+     EEF   D  +  +P         + +D   P +GI++   RT 
Sbjct: 144 AHVETFADVGSNVPPGFEEFPPVDQNDMEIPSMSSHRFNMSQDDITRPSRGIDS---RTT 203

Query: 121 VGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAEL 180
             GS     K +R    S   +VI+DAM +Q   L++I+EW R     E+ +    +  L
Sbjct: 204 SSGS-----KCRRGGQTSKTADVIKDAMALQTDQLRLIAEWPRLALEDESRVRREVVRAL 261

[Close]

BLAST of Sed0005282.1 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 78/218 (35.78%), Postives = 128/218 (58.72%), Query Frame = 0


Query: 1   MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGG 60
           M GP+CSGFGWN E +C+ AE++++D W+KSHPAAKGL +K FP+YD+LS++FGK+RA G
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAEDAPVKGINNTLVRTQVGGSS- 120
           + ++    +GS+ + +  +   L DS +  +P    T     V    + +   + G +S 
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIP----TMYSQGVHMSPDEMFGIRAGQASE 203

Query: 121 ----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELK 180
               SS+ KRKR   +   V VI   M+     LK I++W +E+RA+E  +  + + +L+
Sbjct: 204 RRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQ 263

Query: 181 NLPDLDGPLFTYAMKQVLASEFTMELFLSVPKKFKMDY 213
           ++P L        M+ +  S   +E FLS+P + K++Y
Sbjct: 264 DIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 297

[Close]

BLAST of Sed0005282.1 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 78/218 (35.78%), Postives = 128/218 (58.72%), Query Frame = 0


Query: 1   MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGG 60
           M GP+CSGFGWN E +C+ AE++++D W+KSHPAAKGL +K FP+YD+LS++FGK+RA G
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  SGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAEDAPVKGINNTLVRTQVGGSS- 120
           + ++    +GS+ + +  +   L DS +  +P    T     V    + +   + G +S 
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIP----TMYSQGVHMSPDEMFGIRAGQASE 203

Query: 121 ----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELK 180
               SS+ KRKR   +   V VI   M+     LK I++W +E+RA+E  +  + + +L+
Sbjct: 204 RRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQ 263

Query: 181 NLPDLDGPLFTYAMKQVLASEFTMELFLSVPKKFKMDY 213
           ++P L        M+ +  S   +E FLS+P + K++Y
Sbjct: 264 DIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 297

[Close]

BLAST of Sed0005282.1 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 77/211 (36.49%), Postives = 122/211 (57.82%), Query Frame = 0


Query: 8   GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQT 67
           GFGWN + KC+ AE+EV+D WVKSHP AKGL NKP PHYD+L+  FGK+RA G+      
Sbjct: 4   GFGWNDDHKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPV 63

Query: 68  EIGSSRTELLEEFSLDDSQEYYVPIPPY--TAEDAPVKGINNTLVRTQVGGSSSSLGKRK 127
           ++ SS    + E +  ++Q++Y+P PP   T EDA  + + NT       G+SS   KRK
Sbjct: 64  DMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRK 123

Query: 128 RSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFT 187
           RS + S MV+V+   M++Q ++L+ ++ W  ++   +    +    +LK +P+L+   + 
Sbjct: 124 RSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEANDYV 183

Query: 188 YAMKQVLASEFTMELFLSVPKKFKMDYLKHL 217
             +  ++ +      FL VP +FK  +   L
Sbjct: 184 RLVGILMTNVKKSISFLEVPIEFKKMFCMQL 213

[Close]

BLAST of Sed0005282.1 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.1e-27
Identity = 70/212 (33.02%), Postives = 117/212 (55.19%), Query Frame = 0


Query: 1   MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGG 60
           M GP+CSGFGWN E +C+ AE++++D WVKSHPA KGL +K FP+YD+LS++FGK+RA G
Sbjct: 366 MRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGKDRATG 425

Query: 61  SGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDAPVKGINNTLVRTQVGGSSSS 120
           + ++   ++GS+   +  +          +P+     ED P      T+    V  S   
Sbjct: 426 ARSETFVDVGSNVPNMFND---------TIPLGDSHDEDIP------TMYSQGVHISPDE 485

Query: 121 LGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLD 180
           +              VI   M+     LK I++W++E+RA+E  +  + + +L+++P+L 
Sbjct: 486 M--------FGIRAEVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQLQDIPELR 545

Query: 181 GPLFTYAMKQVLASEFTMELFLSVPKKFKMDY 213
               T  M+ +  S   +  FLS+P + K++Y
Sbjct: 546 SQYRTKLMQILFRSLEAIGGFLSIPTELKLEY 554

[Close]

BLAST of Sed0005282.1 vs. ExPASy TrEMBL
Match: A0A5D3BQP3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00070 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 69/206 (33.50%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 1   MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGG 60
           M GP CSGFGWN E KC+ AE++++D WV+SHPA KGL NKPFP+YDEL+++FG++RA G
Sbjct: 34  MWGPACSGFGWNDEEKCIIAEKKLFDNWVRSHPATKGLFNKPFPYYDELTYVFGRDRATG 93

Query: 61  SGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDAPVKGINNTLVRTQVGGSSSS 120
             A+   ++GS+  +  + F + D  E + P+     +        +   RT  G + SS
Sbjct: 94  RFAETFADMGSNEPDEYDRFDIGDGNEEFPPVYSQGIDLLQDDVHASRPSRTLEGRTGSS 153

Query: 121 LGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLD 180
             KRKR   +   V  +  A+      L++I+ WS    A +  +       L+ +P L 
Sbjct: 154 GSKRKRGSQREVDVEGVHLALDQTNEQLRMIARWSARALANDNHVRTEFFCILREMPKLT 213

Query: 181 GPLFTYAMKQVLASEFTMELFLSVPK 207
               T   + +L+    +  F+ +P+
Sbjct: 214 SLDRTLLQRHLLSCMDDLRGFVLMPE 239

[Close]

BLAST of Sed0005282.1 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-07
Identity = 51/193 (26.42%), Postives = 77/193 (39.90%), Query Frame = 0


Query: 7   SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGA--- 66
           SGFGW+P  K  +A  EV+  ++K+HP  K L    F  +DEL  IFG+  A G  A   
Sbjct: 92  SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAIGL 151

Query: 67  -----QLQTEIGSS-RTELLEEF---------SLDDSQEYYVPIPPYTAEDAPVKGINNT 126
                 L    G + R E +++F         +  +S E+Y P   +   ++P       
Sbjct: 152 CDSTDGLTYRAGENPRKEYVDDFDNVYEYDTTTHHESSEHYAPFMSHGTSESP------- 211

Query: 127 LVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQS-YLKVISEWSREQRAIEATLHE 181
                       L  RKR+  + +     E  M V  S  L +I +    Q+   A    
Sbjct: 212 -----------KLPPRKRTRSERSTSQKEESPMMVVSSKILDIIQQREERQQNEVAQKKN 266

[Close]

BLAST of Sed0005282.1 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-07
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 7   SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGA 64
           SGFGW+PE K  +A  EV+  ++K+HP  K +  +   H+++L  IFG   A GS A
Sbjct: 88  SGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFEDLQIIFGDVVATGSFA 144

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BLAST of Sed0005282.1 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 4.1e-07
Identity = 32/107 (29.91%), Postives = 51/107 (47.66%), Query Frame = 0


Query: 8   GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFG-------KERAGG 67
           GF W+     +SA+  V+D ++K HP A+    K  P Y++L  IF          R  G
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDHRDDG 304

Query: 68  SGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDAPVKGINN 108
           S AQ      +S T+  +E + D ++ ++ P   Y   D  V+ +NN
Sbjct: 305 SAAQ------TSETKASQEQNSDRTRIFWTPPMDYHLIDLLVEQVNN 345

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BLAST of Sed0005282.1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 22/69 (31.88%), Postives = 36/69 (52.17%), Query Frame = 0


Query: 7   SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQ 66
           +GF W+     V A+ ++++ ++++HP A+    K  P Y  L FIFGKE + G   +L 
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYTRLA 458

Query: 67  TEIGSSRTE 76
                S  E
Sbjct: 459 QAFDPSPAE 467

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BLAST of Sed0005282.1 vs. TAIR 10
Match: AT2G29880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 260 Blast hits to 212 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 240; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 9.5e-04
Identity = 44/184 (23.91%), Postives = 76/184 (41.30%), Query Frame = 0


Query: 7   SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQ 66
           SGFGW+P  K  +A  +V+  ++  HP    +    F  +++L  IF    A G+ A   
Sbjct: 97  SGFGWDPITKQFTAPDDVWAAYLMGHPNHHHMRTSTFEDFEDLQLIFESAIAKGNNA--- 156

Query: 67  TEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDAPVKGINNTLVR----TQVGGSSSSLG 126
              G       E F  +D  +    +      D  V   N TL +    T+    ++  G
Sbjct: 157 --FGLGGDSNAETFEEEDDLQAGDNVNHMEINDDEV---NETLPKEKLPTRKRSKTNRNG 216

Query: 127 KRKRS-HHKSAMVNVIEDAMQVQQSYLKVISE-WSREQRAIEATLHER----CLAELKNL 181
            R  S +H  +   V+ + + V  + + +I +   R QR +E    E+        +K +
Sbjct: 217 DRSDSINHGESSEKVLSEMIGVGTNIINLIQQREERHQREVEFRETEKKKNNVWDAIKEI 272

The following BLAST results are available for this feature:

BLAST of Sed0005282.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	2.2e-31	35.78	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
XP_038899283.1	1.6e-29	36.24	uncharacterized protein LOC120086622 [Benincasa hispida] >XP_038899284.1 unchara...	[more]
XP_022158565.1	4.7e-29	36.49	uncharacterized protein LOC111025018 [Momordica charantia]	[more]
XP_031744343.1	8.8e-28	35.65	uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharact...	[more]
XP_031742657.1	1.3e-26	38.71	uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact...	[more]

BLAST of Sed0005282.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005282.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	1.1e-31	35.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.1e-31	35.78	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A6J1DW73	2.3e-29	36.49	uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3DG22	8.1e-27	33.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQP3	1.4e-26	33.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0005282.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	1.1e-07	26.42	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G30140.1	2.4e-07	42.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.1	4.1e-07	29.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	1.2e-06	31.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G29880.1	9.5e-04	23.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..213
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 1..213

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0005282	Sed0005282	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005282.1-five_prime_utr	Sed0005282.1-five_prime_utr-LG10:9220809..9220942	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005282.1-exon	Sed0005282.1-exon-LG10:9220809..9221032	exon
Sed0005282.1-exon	Sed0005282.1-exon-LG10:9221102..9221882	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005282.1-cds	Sed0005282.1-cds-LG10:9220943..9221032	CDS
Sed0005282.1-cds	Sed0005282.1-cds-LG10:9221102..9221662	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0005282.1-three_prime_utr	Sed0005282.1-three_prime_utr-LG10:9221663..9221882	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0005282.1	Sed0005282.1-protein	polypeptide