Sed0003244.1 (mRNA) Chayote v1

Overview


Name	Sed0003244.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG11: 1622020 .. 1623047 (-)
Sequence length	258
RNA-Seq Expression	Sed0003244.1
Synteny	Sed0003244.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAATATTTTGTGTCTGTTCCAAAGAGGCAACAACCCATTTCAAGAAGTAATCGACTCTTTTTGAGTAATTGACTCTTTTTTACAAAATGTTTAAAAAATAGATCCCTAAACACAATTAACCCCACAAAAAGGCTATTCATTCCAAAATGTGGTAGTATAAGTGTCACCATGTCTTTAGGTTGCATATAGTTTGCAATTTTTATTTCATAATTAGCATAAGTCTTTATCAAACTAACAATTTTTAATTTCTTTTTGTTTAATTACAGAGAGCTTTATTCATTCTTCTCTTTCAGGCCGTCGTGCCGCTGCCTCCGCTAGCCTTCAACGCCAGCTTCCAGGGGCTTTCTCCCCGGTCGTTACACCTGATCTTCCACCTGCGAATCATTCTTCAAATGCTGGTGCTATCGCTGCCGGCCCCCCTCGCCCGCCTCGTCCCTGCTCTCTTCGCTCCTCCGCCACCGACATCCCCATTCTCGCACAAGTTAGGGCAGGGCTTTCACCTCCAAGTGTCAATTCGCAAGCCCGAGTCCAAGAACGAATCCAAGCCCAAGCCCCGGCCTTGGCCCCAGGGCCGCGAGCCCCAGCCCAGCCCCACGAGCCCCAACATCGTGAGCCCCGCGATCCCCAACATTGCCAGCACAGCGAGCCCGACCAGAAATGTGTCGGAACTGTAGAAATTGTGATATCCGTCGGTGCCCTTGTCGTTGGGCAGGACGGCCGTGCACCGGTGCATGTGGCTGCAATCCAGAAATTTGCCAAAATCGACATTGATGTTTTTTCTTTATTTTAGTGACTGGTGCCTCCTAACAAGAACTACTTTCTTATATCTTTTATTCATTAGTAGCAATGAACAATGCCTTTGTAGAATGATAGTGACAACACTAAATGTGTGGTATGAAACGGAGAAATTACAGTGATATTAGCATATTTTTAGTGAATCTTAATACACATTCGATGGGTCAAACTTAGATGGAAAGTCAACTTTTTGTTTTCTCTTAATTTAGGTTGTGATTGGACACTGA

mRNA sequence

ATGAGAAAATATTTTGTGTCTGTTCCAAAGAGGCAACAACCCATTTCAAGAAGCCGTCGTGCCGCTGCCTCCGCTAGCCTTCAACGCCAGCTTCCAGGGGCTTTCTCCCCGGTCGTTACACCTGATCTTCCACCTGCGAATCATTCTTCAAATGCTGGTGCTATCGCTGCCGGCCCCCCTCGCCCGCCTCGTCCCTGCTCTCTTCGCTCCTCCGCCACCGACATCCCCATTCTCGCACAAGTTGTGATTGGACACTGA

Coding sequence (CDS)

ATGAGAAAATATTTTGTGTCTGTTCCAAAGAGGCAACAACCCATTTCAAGAAGCCGTCGTGCCGCTGCCTCCGCTAGCCTTCAACGCCAGCTTCCAGGGGCTTTCTCCCCGGTCGTTACACCTGATCTTCCACCTGCGAATCATTCTTCAAATGCTGGTGCTATCGCTGCCGGCCCCCCTCGCCCGCCTCGTCCCTGCTCTCTTCGCTCCTCCGCCACCGACATCCCCATTCTCGCACAAGTTGTGATTGGACACTGA

Protein sequence

MRKYFVSVPKRQQPISRSRRAAASASLQRQLPGAFSPVVTPDLPPANHSSNAGAIAAGPPRPPRPCSLRSSATDIPILAQVVIGH

Homology

The following BLAST results are available for this feature:

BLAST of Sed0003244.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0003244.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0003244.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0003244.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0003244	Sed0003244	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003244.1-cds	Sed0003244.1-cds-LG11:1622020..1622037	CDS
Sed0003244.1-cds	Sed0003244.1-cds-LG11:1622561..1622748	CDS
Sed0003244.1-cds	Sed0003244.1-cds-LG11:1622996..1623047	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003244.1-exon	Sed0003244.1-exon-LG11:1622020..1622037	exon
Sed0003244.1-exon	Sed0003244.1-exon-LG11:1622561..1622748	exon
Sed0003244.1-exon	Sed0003244.1-exon-LG11:1622996..1623047	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0003244.1	Sed0003244.1-protein	polypeptide