Sed0003146.1 (mRNA) Chayote v1

Overview


Name	Sed0003146.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Ubiquitin-conjugating enzyme, E2
Location	LG01: 5882787 .. 5884946 (-)
Sequence length	673
RNA-Seq Expression	Sed0003146.1
Synteny	Sed0003146.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTCCTATTAGCACCACAGTTGGAAACCCTTCCCCTTCATTCCTCGTCGATCCATCTCCAAAGGGTATTATTTCTGCACTTAATTTCTGAATGTCGATTTGTTATTTTCTTGAGCTCAAATCTTTTGTTCGGATTGTTTTTTCCTGTTGGGGATTCAAGTTTCCCGTTTGTATTGTTCTGTAGGAATTAATGGCGTCGAAGCGTATTCTTAAAGAGCTCAAGGATTTGCAGAAGGATCCTCCTACGTCTTGCAGCGCCGGTATATTTGACCTTTTCCTTGTGGTTTATGGAGTTCTGTAATGATCGTTTCTAATCTGGCTATCTATTTTTGGTTATTTTCTATTTTGAGGTTCTCAAGTATGGGGTCTGTTGTTTTTTCAATCCATTTTGGTTTTTTGAAAATCAAGTCTTCAATGGCTACTCTAACCCATGATTTTGTTTACTTAAATATTCCTACACTTCACCCTGAAAACTAGAGAAAAAAAAGAGCTTCCAAAAACTTGTTAGGATTCATTTACTTCCAGAAATATTACTTCCTTAAAAGGGCTTCCAAAAACTAGAAAAAAATGGCTTCCAAAAACTTTTAGGATTCAATTACTTCCTTAAAAAAGATGAAATATTTTGTAAAGAAATTTAATGAAATGAAAACCAGCTTGAATTTCAAAAACAAATAAACTAATGGTTCAATGGTCAAGGGGTTCTAAGTAATTAAGAGGTGATGAAGTTCAATTCACAGAGGGCACTTACCTAGGAATTAATTTCCCACGAGTTTCATTGGCATCCAAATATTATAGGGTCTGGTGGTAATATCTTGTCACATTAGTCGAAGTGTGCGTAAGATGGCTTGAATAGTCACGGATATTAAAAAAAAAAAAAGCTTTTCCCTGTTTTATTAGTTTTCAAGTTTCTGCCAAAAGTACCTCAAAACTTTTCTCTAAATCCATATGGGTTATTGTCATCATACTGTTTTCAATAGGGCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAACTATCATGGGTCCTGCTGACTCTCCATATTCAGGAGGTGTATTCTTGGTTTCTATTCATTTCCCCCCGGATTATCCTTTCAAGCCCCCAAAGGTAAAATATTTTCTAGTTTGAATACTTGTGTTTGTATTTGTTGTTTCTAATAGCCATGTGTTCTAATTTGACCTATTAATCGACATCTGCATTTACCGTAATTAGATATCTATTACTATGATATTGTGTTTTGGCTAGCCGAAGTCAAGATTGTTTTATTAGTTTTCACTAAGTTTGATGCTCTCGATTTTGATTGTCTTGTGCTACACTGTCATTGTATACTGGTGTATGGTTCTTAAAAACTGAACATCGCAGGTTGCTTTTAGGACTAAGGTGTTCCACCCTAACATTAATAGCAATGGAAGCATATGTCTGGACATTCTTAAAGAACAATGGAGCCCTGCTCTAACTATCTCTAAGGTTAGCGTAAATTTACTGTCTTGTTAAACTTAACAAACTAAACTAGTTTCGAACTTTGGTCAGTGGTCTTTGCTCATGTTCTATGTTTATCTTTAAACCATCTGTTACTCGTTTTACCAACACTGTTTGGTTGTTTGTTCCAACGTATTAGAGTCATACATTTTGCTTGTTTAATTAGGGAATAAGTGATCTTTCCAGAATAACCGCATTATTTATCTATTTTCTGTCTTCTTGGAACTGTGATATTTGACTGAGTGGCCTTGAAATTGATACTCTTTGCCTTCTTGCATTTAGTTCTCTGTATTTTTGCATACTTGCTTCTCTTGGTCTTGATTTCGAGATTAACCGATAGAAGTTGTAGAACATTAACATGAACCAAGTGTGTTAATATTTCAGGTGCTTTTGTCCATTTGCTCCCTGTTAACTGATCCCAACCCCGACGATCCTCTTGTTCCCGAAATTGCTCACATGTACAAGACTGATCGAGCCAAGTACGAATCTACTGCACGCAGCTGGACTCAAAAGTATGCTATGGGATAATAAACTACAGCTCTCGAAGGGAGAGGTGTCCTTGAATCTTATTTTCAGGAAGTCGTAACACCTAAAACTTTTCTATGGAACTTAATTTTCATTGTGAATATTGATTTGAAGAAATTATATAATGGAAGAAATTATATTGCTCTATATTATCAAA

mRNA sequence

TGTCTCCTATTAGCACCACAGTTGGAAACCCTTCCCCTTCATTCCTCGTCGATCCATCTCCAAAGGGAATTAATGGCGTCGAAGCGTATTCTTAAAGAGCTCAAGGATTTGCAGAAGGATCCTCCTACGTCTTGCAGCGCCGGGCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAACTATCATGGGTCCTGCTGACTCTCCATATTCAGGAGGTGTATTCTTGGTTTCTATTCATTTCCCCCCGGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACTAAGGTGTTCCACCCTAACATTAATAGCAATGGAAGCATATGTCTGGACATTCTTAAAGAACAATGGAGCCCTGCTCTAACTATCTCTAAGGTGCTTTTGTCCATTTGCTCCCTGTTAACTGATCCCAACCCCGACGATCCTCTTGTTCCCGAAATTGCTCACATGTACAAGACTGATCGAGCCAAGTACGAATCTACTGCACGCAGCTGGACTCAAAAGTATGCTATGGGATAATAAACTACAGCTCTCGAAGGGAGAGGTGTCCTTGAATCTTATTTTCAGGAAGTCGTAACACCTAAAACTTTTCTATGGAACTTAATTTTCATTGTGAATATTGATTTGAAGAAATTATATAATGGAAGAAATTATATTGCTCTATATTATCAAA

Coding sequence (CDS)

ATGGCGTCGAAGCGTATTCTTAAAGAGCTCAAGGATTTGCAGAAGGATCCTCCTACGTCTTGCAGCGCCGGGCCTGTGGCTGAAGACATGTTTCATTGGCAAGCAACTATCATGGGTCCTGCTGACTCTCCATATTCAGGAGGTGTATTCTTGGTTTCTATTCATTTCCCCCCGGATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACTAAGGTGTTCCACCCTAACATTAATAGCAATGGAAGCATATGTCTGGACATTCTTAAAGAACAATGGAGCCCTGCTCTAACTATCTCTAAGGTGCTTTTGTCCATTTGCTCCCTGTTAACTGATCCCAACCCCGACGATCCTCTTGTTCCCGAAATTGCTCACATGTACAAGACTGATCGAGCCAAGTACGAATCTACTGCACGCAGCTGGACTCAAAAGTATGCTATGGGATAA

Protein sequence

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG

Homology

[Close]

BLAST of Sed0003146.1 vs. NCBI nr
Match: XP_022757501.1 (ubiquitin-conjugating enzyme E2 28 [Durio zibethinus])

HSP 1 Score: 310.5 bits (794), Expect = 8.0e-81
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. NCBI nr
Match: XP_004294717.1 (PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Fragaria vesca subsp. vesca])

HSP 1 Score: 310.5 bits (794), Expect = 8.0e-81
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPY+GGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. NCBI nr
Match: XP_019432381.1 (PREDICTED: ubiquitin-conjugating enzyme E2 28 [Lupinus angustifolius] >XP_019432388.1 PREDICTED: ubiquitin-conjugating enzyme E2 28 [Lupinus angustifolius] >XP_019432390.1 PREDICTED: ubiquitin-conjugating enzyme E2 28 [Lupinus angustifolius] >XP_019432399.1 PREDICTED: ubiquitin-conjugating enzyme E2 28 [Lupinus angustifolius] >XP_019432406.1 PREDICTED: ubiquitin-conjugating enzyme E2 28 [Lupinus angustifolius] >XP_038901211.1 ubiquitin-conjugating enzyme E2 28 [Benincasa hispida] >KAF1868945.1 hypothetical protein Lal_00048224 [Lupinus albus] >KAF7816246.1 ubiquitin-conjugating enzyme E2-17 kDa [Senna tora] >OIW16104.1 hypothetical protein TanjilG_18819 [Lupinus angustifolius])

HSP 1 Score: 310.5 bits (794), Expect = 8.0e-81
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE+TARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. NCBI nr
Match: XP_022944038.1 (ubiquitin-conjugating enzyme E2 28 [Cucurbita moschata] >XP_022944039.1 ubiquitin-conjugating enzyme E2 28 [Cucurbita moschata] >XP_023512533.1 ubiquitin-conjugating enzyme E2 28 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023512534.1 ubiquitin-conjugating enzyme E2 28 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.1 bits (793), Expect = 1.0e-80
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE TARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEGTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. NCBI nr
Match: XP_006391653.1 (ubiquitin-conjugating enzyme E2 28 [Eutrema salsugineum] >ESQ28938.1 hypothetical protein EUTSA_v10023744mg [Eutrema salsugineum] >ESQ28939.1 hypothetical protein EUTSA_v10023744mg [Eutrema salsugineum])

HSP 1 Score: 310.1 bits (793), Expect = 1.0e-80
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy Swiss-Prot
Match: Q94F47 (Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 3.1e-83
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy Swiss-Prot
Match: P35135 (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 6.8e-83
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY+GGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE+TARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy Swiss-Prot
Match: P35131 (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana OX=3702 GN=UBC8 PE=1 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-82
Identity = 144/148 (97.30%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPA+SPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE+TAR+WTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARNWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy Swiss-Prot
Match: P35132 (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana OX=3702 GN=UBC9 PE=1 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 5.8e-82
Identity = 143/148 (96.62%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTD+ KYESTAR+WTQKYAMG
Sbjct: 121 PEIAHMYKTDKNKYESTARTWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy Swiss-Prot
Match: Q8S919 (Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5B PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 9.9e-82
Identity = 142/148 (95.95%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQAT+MGP+DSPY+GGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATLMGPSDSPYAGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVA +TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVALKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy TrEMBL
Match: A0A6A5MDS8 (UBC core domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00048224 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 3.9e-81
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE+TARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy TrEMBL
Match: A0A4P1RQB3 (UBC core domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_18819 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 3.9e-81
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE+TARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy TrEMBL
Match: A0A6P5ZYI1 (ubiquitin-conjugating enzyme E2 28 OS=Durio zibethinus OX=66656 GN=LOC111304809 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 3.9e-81
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy TrEMBL
Match: V4KNM6 (UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023744mg PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.1e-81
Identity = 146/148 (98.65%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. ExPASy TrEMBL
Match: A0A6J1FVW2 (ubiquitin-conjugating enzyme E2 28 OS=Cucurbita moschata OX=3662 GN=LOC111448584 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.1e-81
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE TARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEGTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. TAIR 10
Match: AT1G64230.1 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 308.9 bits (790), Expect = 2.2e-84
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. TAIR 10
Match: AT1G64230.2 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 308.9 bits (790), Expect = 2.2e-84
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYESTARSWTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. TAIR 10
Match: AT5G41700.2 (ubiquitin conjugating enzyme 8 )

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-83
Identity = 144/148 (97.30%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPA+SPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE+TAR+WTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARNWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. TAIR 10
Match: AT5G41700.1 (ubiquitin conjugating enzyme 8 )

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-83
Identity = 144/148 (97.30%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPA+SPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE+TAR+WTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARNWTQKYAMG 148

[Close]

BLAST of Sed0003146.1 vs. TAIR 10
Match: AT5G41700.5 (ubiquitin conjugating enzyme 8 )

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-83
Identity = 144/148 (97.30%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVSIHFPPDY 60
           MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPA+SPYSGGVFLV+IHFPPDY
Sbjct: 1   MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDY 60

Query: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120
           PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV
Sbjct: 61  PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLV 120

Query: 121 PEIAHMYKTDRAKYESTARSWTQKYAMG 149
           PEIAHMYKTDRAKYE+TAR+WTQKYAMG
Sbjct: 121 PEIAHMYKTDRAKYEATARNWTQKYAMG 148

The following BLAST results are available for this feature:

BLAST of Sed0003146.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022757501.1	8.0e-81	99.32	ubiquitin-conjugating enzyme E2 28 [Durio zibethinus]	[more]
XP_004294717.1	8.0e-81	99.32	PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Fragaria vesca subsp. vesca]	[more]
XP_019432381.1	8.0e-81	99.32	PREDICTED: ubiquitin-conjugating enzyme E2 28 [Lupinus angustifolius] >XP_019432...	[more]
XP_022944038.1	1.0e-80	99.32	ubiquitin-conjugating enzyme E2 28 [Cucurbita moschata] >XP_022944039.1 ubiquiti...	[more]
XP_006391653.1	1.0e-80	98.65	ubiquitin-conjugating enzyme E2 28 [Eutrema salsugineum] >ESQ28938.1 hypothetica...	[more]

BLAST of Sed0003146.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F47	3.1e-83	97.97	Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1...	[more]
P35135	6.8e-83	97.97	Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P35131	1.5e-82	97.30	Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana OX=3702 GN=UBC8 PE=1 S...	[more]
P35132	5.8e-82	96.62	SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana OX=3702 GN=UBC9 PE=1 SV=1	[more]
Q8S919	9.9e-82	95.95	Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica OX=39947 GN=U...	[more]

BLAST of Sed0003146.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5MDS8	3.9e-81	99.32	UBC core domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00048224 PE=3...	[more]
A0A4P1RQB3	3.9e-81	99.32	UBC core domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_1...	[more]
A0A6P5ZYI1	3.9e-81	99.32	ubiquitin-conjugating enzyme E2 28 OS=Durio zibethinus OX=66656 GN=LOC111304809 ...	[more]
V4KNM6	5.1e-81	98.65	UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v100...	[more]
A0A6J1FVW2	5.1e-81	99.32	ubiquitin-conjugating enzyme E2 28 OS=Cucurbita moschata OX=3662 GN=LOC111448584...	[more]

BLAST of Sed0003146.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64230.1	2.2e-84	97.97	ubiquitin-conjugating enzyme 28	[more]
AT1G64230.2	2.2e-84	97.97	ubiquitin-conjugating enzyme 28	[more]
AT5G41700.2	1.1e-83	97.30	ubiquitin conjugating enzyme 8	[more]
AT5G41700.1	1.1e-83	97.30	ubiquitin conjugating enzyme 8	[more]
AT5G41700.5	1.1e-83	97.30	ubiquitin conjugating enzyme 8	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 4..147 e-value: 1.9E-80 score: 283.3
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 3..145
None	No IPR available	PANTHER	PTHR24068:SF346	BNAA01G32320D PROTEIN	coord: 3..145
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 1..148 e-value: 2.4E-75 score: 253.5
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 2..147
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 5..141 e-value: 7.8E-54 score: 181.1
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 1..147 score: 60.935078
IPR000608	Ubiquitin-conjugating enzyme E2	CDD	cd00195	UBCc	coord: 3..142 e-value: 1.89886E-75 score: 219.381
IPR023313	Ubiquitin-conjugating enzyme, active site	PROSITE	PS00183	UBC_1	coord: 74..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0003146	Sed0003146	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003146.1-exon	Sed0003146.1-exon-LG01:5882787..5883084	exon
Sed0003146.1-exon	Sed0003146.1-exon-LG01:5883481..5883585	exon
Sed0003146.1-exon	Sed0003146.1-exon-LG01:5883841..5883968	exon
Sed0003146.1-exon	Sed0003146.1-exon-LG01:5884686..5884761	exon
Sed0003146.1-exon	Sed0003146.1-exon-LG01:5884881..5884946	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003146.1-three_prime_utr	Sed0003146.1-three_prime_utr-LG01:5882787..5882940	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003146.1-cds	Sed0003146.1-cds-LG01:5882941..5883084	CDS
Sed0003146.1-cds	Sed0003146.1-cds-LG01:5883481..5883585	CDS
Sed0003146.1-cds	Sed0003146.1-cds-LG01:5883841..5883968	CDS
Sed0003146.1-cds	Sed0003146.1-cds-LG01:5884686..5884755	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003146.1-five_prime_utr	Sed0003146.1-five_prime_utr-LG01:5884756..5884761	five_prime_UTR
Sed0003146.1-five_prime_utr	Sed0003146.1-five_prime_utr-LG01:5884881..5884946	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0003146.1	Sed0003146.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016746	acyltransferase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004839	ubiquitin activating enzyme activity
molecular_function	GO:0061631	ubiquitin conjugating enzyme activity