Sed0002726.1 (mRNA) Chayote v1

Overview


Name	Sed0002726.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Importin subunit beta-1
Location	LG01: 63925027 .. 63925284 (+)
Sequence length	258
RNA-Seq Expression	Sed0002726.1
Synteny	Sed0002726.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATGGGTGTGTTGAGTTGTTGGGGTCCAGATTGCATCTCACAAGTCTTCATTCTCAGGGCAACAGGGAGCTGTTCACTTCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGGTCTTGTGTGTCATGGTCGAAGTGGGAGGAGAGAAGCATCCATTAGTGCCCCCGGTGGTTCGTATGGTTTGGTCGGTTCGAATTGTATCTCTGACTTGAGATAG

mRNA sequence

ATGCATATGGGTGTGTTGAGTTGTTGGGGTCCAGATTGCATCTCACAAGTCTTCATTCTCAGGGCAACAGGGAGCTGTTCACTTCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGGTCTTGTGTGTCATGGTCGAAGTGGGAGGAGAGAAGCATCCATTAGTGCCCCCGGTGGTTCGTATGGTTTGGTCGGTTCGAATTGTATCTCTGACTTGAGATAG

Coding sequence (CDS)

ATGCATATGGGTGTGTTGAGTTGTTGGGGTCCAGATTGCATCTCACAAGTCTTCATTCTCAGGGCAACAGGGAGCTGTTCACTTCCAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGGTCTTGTGTGTCATGGTCGAAGTGGGAGGAGAGAAGCATCCATTAGTGCCCCCGGTGGTTCGTATGGTTTGGTCGGTTCGAATTGTATCTCTGACTTGAGATAG

Protein sequence

MHMGVLSCWGPDCISQVFILRATGSCSLPVVTNSCIIMKALLTIALAASSRGLVCHGRSGRREASISAPGGSYGLVGSNCISDLR

Homology

[Close]

BLAST of Sed0002726.1 vs. NCBI nr
Match: KGN49854.1 (hypothetical protein Csa_000509 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MHMGVLSCWGPDCISQVFILRATGSCSLPVVTNSCI--IMKALLTIALAASSRGLVCHGR 60
          MHMGVLS WGPDCI QVF LR TGSCSL VVTNSCI  IMKALLTIALAASSR LVCHGR
Sbjct: 1  MHMGVLS-WGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGR 60

Query: 61 SGRREASISAP 70
          SGRRE  ++ P
Sbjct: 61 SGRRERPLAPP 70

[Close]

BLAST of Sed0002726.1 vs. NCBI nr
Match: KAA0042542.1 (importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit beta-1 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-19
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MHMGVLSCWGPDCISQVFILRATGSCSLPVVTNSCI--IMKALLTIALAASSRGLVCHGR 60
           MHMGVLS WGPDCI QVF LR TGSCSL VVTNSCI  IMKALLTIALAASSR LVCHGR
Sbjct: 865 MHMGVLS-WGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGR 924

Query: 61  SGRREASISAP 70
           SG+RE  ++ P
Sbjct: 925 SGKRERPLAPP 934

[Close]

BLAST of Sed0002726.1 vs. ExPASy TrEMBL
Match: A0A0A0KLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.4e-20
Identity = 58/71 (81.69%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MHMGVLSCWGPDCISQVFILRATGSCSLPVVTNSCI--IMKALLTIALAASSRGLVCHGR 60
          MHMGVLS WGPDCI QVF LR TGSCSL VVTNSCI  IMKALLTIALAASSR LVCHGR
Sbjct: 1  MHMGVLS-WGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGR 60

Query: 61 SGRREASISAP 70
          SGRRE  ++ P
Sbjct: 61 SGRRERPLAPP 70

[Close]

BLAST of Sed0002726.1 vs. ExPASy TrEMBL
Match: A0A5A7TGL2 (Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00380 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1   MHMGVLSCWGPDCISQVFILRATGSCSLPVVTNSCI--IMKALLTIALAASSRGLVCHGR 60
           MHMGVLS WGPDCI QVF LR TGSCSL VVTNSCI  IMKALLTIALAASSR LVCHGR
Sbjct: 865 MHMGVLS-WGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGR 924

Query: 61  SGRREASISAP 70
           SG+RE  ++ P
Sbjct: 925 SGKRERPLAPP 934

The following BLAST results are available for this feature:

BLAST of Sed0002726.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49854.1	1.7e-19	81.69	hypothetical protein Csa_000509 [Cucumis sativus]	[more]
KAA0042542.1	3.8e-19	80.28	importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit ...	[more]

BLAST of Sed0002726.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002726.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLW1	8.4e-20	81.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1	[more]
A0A5A7TGL2	1.9e-19	80.28	Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0002726.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0002726	Sed0002726	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002726.1-exon	Sed0002726.1-exon-LG01:63925027..63925284	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002726.1-cds	Sed0002726.1-cds-LG01:63925027..63925284	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0002726.1	Sed0002726.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0031267	small GTPase binding