Sed0002702.1 (mRNA) Chayote v1

Overview


Name	Sed0002702.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	psbQ-like protein 3, chloroplastic
Location	LG03: 5749586 .. 5750456 (+)
Sequence length	779
RNA-Seq Expression	Sed0002702.1
Synteny	Sed0002702.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACTATCCCTTGCATGCGTGGCACTTTCTCAGCTTCTCTCATCCATAAATAAACTAACACAGAGAGAGTTCACACAAAAAGCTTCACTCCGTTCTCCAATGGCGGAATCAAGCCCAATCTCTCTCTCAACCCTAAATCGCATCCACATCTCTCCCTCTCCTCCCGCAATCGCCTTCCAATCGTCGAAGATCGATTGCACAAACACAACAACCAGAAGATTAGGGCTGGGATTGATAGCGTTAATGGCGACGCCGGTGGAAGTGGTGAACGCTCTGGATCTGAAACTGATCGCGCCGGAGGAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCACGCCGAAGCGCTATTGCAGGTGAGAGGGTTAATCGAATCGGAGTCTTGGAAGGAGGCTCAGAGGCGGCTGAGAAGCAGTTCGTCGGTGCTGAAGCAGGATCTGTACACTATCATCGGATACAAACCGCCGGCTGAGAGACCTCCGCTCCGGAAACTGTATTCGGTTCTCTTCAACAATGTTAGTCGAGTAAGTGAGTTTGATTGTTTGAAGCTCTGATCTGTTGTTCTTCGATTTAGATTTAGATTTAGATTTGGGTTGGTGGTTTTGGTGATTTGCAGATGGATTATGCTGCGAGAGATAGAGATGTGGAGCGAGTTTGGCAGTGCTACGATAACATTGTGATCGCCATATCTGATATTTTGTCCAGAATTTAGAACAAATCAATTTCCTCCCTTCTCTGCATTTATGCTGTTCTTTATTCACTTGCATTTTTAAAAAAAAAAATATATTTTTAAAACAATTAATTAGATTGTGCAAATCAGAAAATTTTGATTCGTAATCAATCCAAGTTGAACTCAAATAATAATAATA

mRNA sequence

AAAACTATCCCTTGCATGCGTGGCACTTTCTCAGCTTCTCTCATCCATAAATAAACTAACACAGAGAGAGTTCACACAAAAAGCTTCACTCCGTTCTCCAATGGCGGAATCAAGCCCAATCTCTCTCTCAACCCTAAATCGCATCCACATCTCTCCCTCTCCTCCCGCAATCGCCTTCCAATCGTCGAAGATCGATTGCACAAACACAACAACCAGAAGATTAGGGCTGGGATTGATAGCGTTAATGGCGACGCCGGTGGAAGTGGTGAACGCTCTGGATCTGAAACTGATCGCGCCGGAGGAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCACGCCGAAGCGCTATTGCAGGTGAGAGGGTTAATCGAATCGGAGTCTTGGAAGGAGGCTCAGAGGCGGCTGAGAAGCAGTTCGTCGGTGCTGAAGCAGGATCTGTACACTATCATCGGATACAAACCGCCGGCTGAGAGACCTCCGCTCCGGAAACTGTATTCGGTTCTCTTCAACAATGTTAGTCGAATGGATTATGCTGCGAGAGATAGAGATGTGGAGCGAGTTTGGCAGTGCTACGATAACATTGTGATCGCCATATCTGATATTTTGTCCAGAATTTAGAACAAATCAATTTCCTCCCTTCTCTGCATTTATGCTGTTCTTTATTCACTTGCATTTTTAAAAAAAAAAATATATTTTTAAAACAATTAATTAGATTGTGCAAATCAGAAAATTTTGATTCGTAATCAATCCAAGTTGAACTCAAATAATAATAATA

Coding sequence (CDS)

ATGGCGGAATCAAGCCCAATCTCTCTCTCAACCCTAAATCGCATCCACATCTCTCCCTCTCCTCCCGCAATCGCCTTCCAATCGTCGAAGATCGATTGCACAAACACAACAACCAGAAGATTAGGGCTGGGATTGATAGCGTTAATGGCGACGCCGGTGGAAGTGGTGAACGCTCTGGATCTGAAACTGATCGCGCCGGAGGAGAGCTTCGAGGAGGCGGAGAGCGGAATCAGAGGCCACGCCGAAGCGCTATTGCAGGTGAGAGGGTTAATCGAATCGGAGTCTTGGAAGGAGGCTCAGAGGCGGCTGAGAAGCAGTTCGTCGGTGCTGAAGCAGGATCTGTACACTATCATCGGATACAAACCGCCGGCTGAGAGACCTCCGCTCCGGAAACTGTATTCGGTTCTCTTCAACAATGTTAGTCGAATGGATTATGCTGCGAGAGATAGAGATGTGGAGCGAGTTTGGCAGTGCTACGATAACATTGTGATCGCCATATCTGATATTTTGTCCAGAATTTAG

Protein sequence

MAESSPISLSTLNRIHISPSPPAIAFQSSKIDCTNTTTRRLGLGLIALMATPVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSSVLKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDILSRI

Homology

[Close]

BLAST of Sed0002702.1 vs. NCBI nr
Match: XP_022991100.1 (psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 260.8 bits (665), Expect = 8.5e-66
Identity = 141/185 (76.22%), Postives = 158/185 (85.41%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAIAFQSSKID---CTN--TTTRRLGLGLIALMA---- 60
           MAE SPIS+S L NRIH S SPP I+FQ   I    C+N  + +RRLGLG +ALMA    
Sbjct: 1   MAELSPISVSNLSNRIHFSSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSSV 60

Query: 61  --TPVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSS 120
             TPV++ NALDLKLIAPE+SFEEAESGIRGHAEA+LQVRGLIESESWKEAQ++LRSSS 
Sbjct: 61  ASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSP 120

Query: 121 VLKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISD 174
           +LKQDLYTII YKPPAERPPLRKLYS+LFNNV+RMDYAARD+D ERVWQCYDNIV+AISD
Sbjct: 121 LLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISD 180

[Close]

BLAST of Sed0002702.1 vs. NCBI nr
Match: XP_023551782.1 (psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-63
Identity = 141/190 (74.21%), Postives = 158/190 (83.16%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHI-SPSPPAIAFQSSKID---CTN------TTTRRLGLGLIALM 60
           MAE SPIS+S L NRIH  S SPP I+ Q   I    C+N      + +RRLGLGLIALM
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPIISVQLFSITAKRCSNCRSISRSISRRLGLGLIALM 60

Query: 61  A------TPVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRL 120
           A      TPV++ NALDLKLIAPE+SFEEAESGIRGHAEA+LQVRGLIESESWKEAQ++L
Sbjct: 61  ASSSVASTPVKIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQL 120

Query: 121 RSSSSVLKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIV 174
           RSSS +LKQDLYTII YKPPAERPPLR+LYS+LFNNV+RMDYAARD+D ERVWQCYDNIV
Sbjct: 121 RSSSPLLKQDLYTIIEYKPPAERPPLRRLYSLLFNNVTRMDYAARDKDAERVWQCYDNIV 180

[Close]

BLAST of Sed0002702.1 vs. NCBI nr
Match: XP_022962345.1 (psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 248.1 bits (632), Expect = 5.7e-62
Identity = 138/186 (74.19%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAI----AFQSSKIDCTN--TTTRRLGLGLIALMA--- 60
           MAE SPIS+S L NRIH S S P I     F  +   C+N  + +RRLGLGLIALMA   
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60

Query: 61  ---TPVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSS 120
              TPV + NALDLKLIAPE+SFEEAESGIRGHAEA+LQVRGLIESESWKEAQ++LR+SS
Sbjct: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120

Query: 121 SVLKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAIS 174
            +LKQDLYTII YKPPAERPPLRKLYS+LFNNV+RMDYAARD+D ERV QCYDNIV+AIS
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIVMAIS 180

[Close]

BLAST of Sed0002702.1 vs. NCBI nr
Match: KAG7032694.1 (PsbQ-like protein 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.8e-61
Identity = 137/186 (73.66%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAI----AFQSSKIDCTN--TTTRRLGLGLIALMA--- 60
           MAE SPIS+S L NRIH S S P I     F  +   C+N  + +RRLGLGLIALMA   
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60

Query: 61  ---TPVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSS 120
              TPV + NALDLKLIAPE+SFEEAESGIRGHAEA+LQVRGLIESESWKEAQ++LR+SS
Sbjct: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120

Query: 121 SVLKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAIS 174
            +LKQDLYTII YKPPAERPPLRKLYS+LFNNV+RMDYAARD+D ERV QCYDNI +AIS
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 180

[Close]

BLAST of Sed0002702.1 vs. NCBI nr
Match: KAG6601995.1 (Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 135/186 (72.58%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAI----AFQSSKIDCTN--TTTRRLGLGLIALMA--- 60
           MAE SPIS+S L NRIH S S P I     F  +   C+N  + +RRLGLGLIAL+A   
Sbjct: 509 MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALLASSS 568

Query: 61  ---TPVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSS 120
              TPV + NALDLKLIAPE+SFEEAESGIRGHAEA+LQVRGLIESESWKEAQ++LR+SS
Sbjct: 569 VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 628

Query: 121 SVLKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAIS 174
            +LKQDLYTII YKPP ERPPLRKLYS+LFNNV+RMDYAARD+D ERV QCYDNI +AIS
Sbjct: 629 PLLKQDLYTIIEYKPPVERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIEMAIS 688

[Close]

BLAST of Sed0002702.1 vs. ExPASy Swiss-Prot
Match: Q2V4B2 (PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.7e-21
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 66  PEESFEEAESGIRGHAEALLQVRG-LIESESWKEAQRRLRSSSSVLKQDLYTIIGYKPPA 125
           PE + E A+ G+R +AE + +++  +IE + WKE  + LR S+S +KQD Y II  KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 126 ERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDILSRI 174
           +RP  R LYS LFN++++MDYAARD D  +V + Y NIV  + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Sed0002702.1 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-10
Identity = 33/102 (32.35%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 72  EAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSSVLKQDLYTIIGYKPPAERPPLRK 131
           EA +  +  A+ ++ V+ LI+ ++W   Q  LRS +S L+ DL TII  KP  E+  L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 132 LYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDILSRI 174
           L + LF+ +  +DYAA+ +   +  + Y   V A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Sed0002702.1 vs. ExPASy TrEMBL
Match: A0A6J1JRX6 (psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487796 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.1e-66
Identity = 141/185 (76.22%), Postives = 158/185 (85.41%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAIAFQSSKID---CTN--TTTRRLGLGLIALMA---- 60
           MAE SPIS+S L NRIH S SPP I+FQ   I    C+N  + +RRLGLG +ALMA    
Sbjct: 1   MAELSPISVSNLSNRIHFSSSPPIISFQLFSITAKRCSNCRSISRRLGLGFMALMASSSV 60

Query: 61  --TPVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSS 120
             TPV++ NALDLKLIAPE+SFEEAESGIRGHAEA+LQVRGLIESESWKEAQ++LRSSS 
Sbjct: 61  ASTPVKITNALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRSSSP 120

Query: 121 VLKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISD 174
           +LKQDLYTII YKPPAERPPLRKLYS+LFNNV+RMDYAARD+D ERVWQCYDNIV+AISD
Sbjct: 121 LLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVWQCYDNIVMAISD 180

[Close]

BLAST of Sed0002702.1 vs. ExPASy TrEMBL
Match: A0A6J1HES6 (psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462819 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.8e-62
Identity = 138/186 (74.19%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAI----AFQSSKIDCTN--TTTRRLGLGLIALMA--- 60
           MAE SPIS+S L NRIH S S P I     F  +   C+N  + +RRLGLGLIALMA   
Sbjct: 1   MAELSPISVSNLSNRIHFSSSSPPINSSQLFSITAKRCSNCRSISRRLGLGLIALMASSS 60

Query: 61  ---TPVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSS 120
              TPV + NALDLKLIAPE+SFEEAESGIRGHAEA+LQVRGLIESESWKEAQ++LR+SS
Sbjct: 61  VASTPVRIANALDLKLIAPEQSFEEAESGIRGHAEAVLQVRGLIESESWKEAQKQLRTSS 120

Query: 121 SVLKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAIS 174
            +LKQDLYTII YKPPAERPPLRKLYS+LFNNV+RMDYAARD+D ERV QCYDNIV+AIS
Sbjct: 121 PLLKQDLYTIIEYKPPAERPPLRKLYSLLFNNVTRMDYAARDKDAERVRQCYDNIVMAIS 180

[Close]

BLAST of Sed0002702.1 vs. ExPASy TrEMBL
Match: A0A6J1CJL2 (psbQ-like protein 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011901 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 7.8e-57
Identity = 127/181 (70.17%), Postives = 149/181 (82.32%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAIAFQSSKI--DCTNTTT---RRLGLGL-IALMAT-P 60
           MAE +PISL +L +R + S SP  ++F+S  I  +C+N  T   RR+GLGL + L  +  
Sbjct: 1   MAELNPISLPSLCSRTNFSSSPAVVSFRSFNIAANCSNENTSISRRIGLGLGLGLTGSMA 60

Query: 61  VEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSSVLKQ 120
           V   NALDLKLIAP +SFEEAESGIRGHAEALL+VRGLIESE+WKEAQ+RLRSSS  LKQ
Sbjct: 61  VGAANALDLKLIAPGQSFEEAESGIRGHAEALLEVRGLIESEAWKEAQKRLRSSSPPLKQ 120

Query: 121 DLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDILSR 174
           DL+TII YKPPAERPPLRKLYS+LFNN++RMDYAARDRD ERVW+CY NIV+AISDILSR
Sbjct: 121 DLHTIIEYKPPAERPPLRKLYSLLFNNITRMDYAARDRDAERVWECYGNIVMAISDILSR 180

[Close]

BLAST of Sed0002702.1 vs. ExPASy TrEMBL
Match: A0A0A0KT23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.6e-56
Identity = 128/184 (69.57%), Postives = 147/184 (79.89%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAIAFQS--SKIDCTNTTT---RRLGLGLIALMAT--- 60
           MA+  PISLS L NRIH S SP  I+F S  +  +C+N  T   RRLGLG IALMA+   
Sbjct: 1   MAKLIPISLSNLTNRIHFSYSPLTISFPSFNTTPNCSNNATNISRRLGLGFIALMASSVT 60

Query: 61  --PVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSSV 120
             P EV NALDLKLIAPE+S +EAESGIR HAEALLQVR LIESE+WKEAQ+RLRS+S++
Sbjct: 61  AIPAEVANALDLKLIAPEQSLDEAESGIRRHAEALLQVRSLIESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDI 174
           LKQDLYTII YKPPAERP LRKLYS+LFNNV+RMDYAARD+DV  VW+ Y  + +AISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVGGVWESYKKMEMAISDI 180

[Close]

BLAST of Sed0002702.1 vs. ExPASy TrEMBL
Match: A0A5A7VLN5 (PsbQ-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G00050 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.7e-54
Identity = 124/184 (67.39%), Postives = 146/184 (79.35%), Query Frame = 0


Query: 1   MAESSPISLSTL-NRIHISPSPPAIAFQS--SKIDCTNTT---TRRLGLGLIALMAT--- 60
           MA+  PISLS L NRIH S SP  I+FQS  +  +C+      +RRLGLG IALMA+   
Sbjct: 1   MAKLIPISLSNLTNRIHFSSSPLTISFQSFNTTPNCSKNAKNISRRLGLGFIALMASSVT 60

Query: 61  --PVEVVNALDLKLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSSV 120
             P EV NAL+LKLIAPE+S +EAE GIRGHAEALLQVR L+ESE+WKEAQ+RLRS+S++
Sbjct: 61  AIPAEVANALNLKLIAPEQSLDEAERGIRGHAEALLQVRSLMESEAWKEAQKRLRSTSAL 120

Query: 121 LKQDLYTIIGYKPPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDI 174
           LKQDLYTII YKPPAERP LRKLYS+LFNNV+RMDYAARD+D   V +CY  + +AISDI
Sbjct: 121 LKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDAGGVRECYKKMEMAISDI 180

[Close]

BLAST of Sed0002702.1 vs. TAIR 10
Match: AT2G01918.1 (PsbQ-like 3 )

HSP 1 Score: 101.7 bits (252), Expect = 6.2e-22
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 66  PEESFEEAESGIRGHAEALLQVRG-LIESESWKEAQRRLRSSSSVLKQDLYTIIGYKPPA 125
           PE + E A+ G+R +AE + +++  +IE + WKE  + LR S+S +KQD Y II  KPP 
Sbjct: 79  PERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPK 138

Query: 126 ERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDILSRI 174
           +RP  R LYS LFN++++MDYAARD D  +V + Y NIV  + DI  RI
Sbjct: 139 DRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187

[Close]

BLAST of Sed0002702.1 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11
Identity = 33/102 (32.35%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 72  EAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSSVLKQDLYTIIGYKPPAERPPLRK 131
           EA +  +  A+ ++ V+ LI+ ++W   Q  LRS +S L+ DL TII  KP  E+  L+ 
Sbjct: 121 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 180

Query: 132 LYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDILSRI 174
           L + LF+ +  +DYAA+ +   +  + Y   V A++++L+++
Sbjct: 181 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of Sed0002702.1 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11
Identity = 33/102 (32.35%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 72  EAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSSVLKQDLYTIIGYKPPAERPPLRK 131
           EA +  +  A+ ++ V+ LI+ ++W   Q  LRS +S L+ DL TII  KP  E+  L+ 
Sbjct: 122 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 181

Query: 132 LYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDILSRI 174
           L + LF+ +  +DYAA+ +   +  + Y   V A++++L+++
Sbjct: 182 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Sed0002702.1 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 43.1 bits (100), Expect = 2.6e-04
Identity = 27/109 (24.77%), Postives = 51/109 (46.79%), Query Frame = 0


Query: 62  KLIAPEESFEEAESGIRGHAEALLQVRGLIESESWKEAQRRLRSSSSVLKQDLYTIIGYK 121
           K   P  S E+A + I+  AE L  +R +++  SW+     +R   + L QDL   +   
Sbjct: 78  KYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNIL 137

Query: 122 PPAERPPLRKLYSVLFNNVSRMDYAARDRDVERVWQCYDNIVIAISDIL 171
           P + R    +  + L  N+S +D+  R   V   +  Y+  + +I +++
Sbjct: 138 PESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVV 186

The following BLAST results are available for this feature:

BLAST of Sed0002702.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991100.1	8.5e-66	76.22	psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_023551782.1	1.4e-63	74.21	psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022962345.1	5.7e-62	74.19	psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita moschata]	[more]
KAG7032694.1	2.8e-61	73.66	PsbQ-like protein 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601995.1	1.8e-60	72.58	Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0002702.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V4B2	8.7e-21	47.71	PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PQL3 PE=2 ...	[more]
Q9XFT3	3.1e-10	32.35	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Sed0002702.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JRX6	4.1e-66	76.22	psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1HES6	2.8e-62	74.19	psbQ-like protein 3, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1CJL2	7.8e-57	70.17	psbQ-like protein 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11101190...	[more]
A0A0A0KT23	8.6e-56	69.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315360 PE=3 SV=1	[more]
A0A5A7VLN5	4.7e-54	67.39	PsbQ-like protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold871G...	[more]

BLAST of Sed0002702.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01918.1	6.2e-22	47.71	PsbQ-like 3	[more]
AT4G21280.1	2.2e-11	32.35	photosystem II subunit QA	[more]
AT4G21280.2	2.2e-11	32.35	photosystem II subunit QA	[more]
AT1G14150.1	2.6e-04	24.77	PsbQ-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 68..172 e-value: 1.7E-17 score: 63.8
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 50..173
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 49..173 e-value: 1.9E-32 score: 114.3
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 66..173
None	No IPR available	PANTHER	PTHR33399:SF6	PSBQ-LIKE PROTEIN 3, CHLOROPLASTIC	coord: 50..173

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0002702	Sed0002702	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002702.1-five_prime_utr	Sed0002702.1-five_prime_utr-LG03:5749586..5749685	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002702.1-exon	Sed0002702.1-exon-LG03:5749586..5750111	exon
Sed0002702.1-exon	Sed0002702.1-exon-LG03:5750204..5750456	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002702.1-cds	Sed0002702.1-cds-LG03:5749686..5750111	CDS
Sed0002702.1-cds	Sed0002702.1-cds-LG03:5750204..5750299	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0002702.1-three_prime_utr	Sed0002702.1-three_prime_utr-LG03:5750300..5750456	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0002702.1	Sed0002702.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity