Sed0001399.1 (mRNA) Chayote v1

Overview


Name	Sed0001399.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Protein transport protein Sec61 subunit beta
Location	LG05: 39711864 .. 39713055 (-)
Sequence length	375
RNA-Seq Expression	Sed0001399.1
Synteny	Sed0001399.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAGGCGCTTCTCAGTCCCAATCCACCTCCAGGCCCGGCGTCGGGGCTCCTCGTGGATCCGCGGCGGCGACGGCCGGCCTCCGCCGTCGCCGTCTCGGCTCCTCCACTTCCGCCGCCGGATCTACCGGACTTGTTGGCGCCGGATCAAGCGGCGGCGGCAACATGCTGAGGTTCTACACCGACGATGCTCCTGGTTTGAAGATTTCTCCGACAGTCGTCCTCGTCGTCAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTCGGTAAACTCTACCGCGCCCGATCTGCCGCTTAAGCTTAATCCTGTGTTGATTGTGTATCGCGTGTTAATTTTTTCTGGATCTTTTCATTCCATAGATCTATAAAATGTTCATGTGACCTAACGCTTTGTTTTCGGATTTTACTCGGTAAATTTAACAATCGTTTTAGTGCCTTGAGGTTTTGATTTGATCAGTTGTGGACGAATTAAGAGGAGCGAGATAGTTCTTTTGCCGATATTTGCTTTTAGGTCATTCTACTTCGTGTTAGTGATCCGGATTGCTGCTGGTTCTTTTTACTGTTCTGTCTATAGTGTTTGTTTCCACTGAAAATTGTGCTTTTATAAGCTATGGTATGAATAACTGTTGTGAAATATGCTATGAATTACTGTTTCTTCTAGCTTTCATTTTGGATTAGTGGAGGTTGTTCTATATATGGGTTCCTGTTTATTATCAATTGCGCATCAATTATGGATTAAGTACATTTATTAATGGATACCGCGCATGTGACATTCATTTGTAGACACGTCTCGTATTTTCATTCCTTTTATGTCTCTCGGTGCCTAACTAGAGACGGCGTGGTTACCCCGCATATTATAATGGGGCGAAGTTCTAATTTTCTGGTTTTAAAAATAAAAATGAATGGATACTCCCACCTTAGATTTGTTTAATAAAGTTGAAGGCTAGCTGTTTTTGGGAAGTGCTATTGACAATCTTCTCTACTGACACAATTAGAGTTAGAAGATAGAATCCAACTTTCATGATTTGTGGTTTCTTACCTTTTGTCATTGCCTTTTTCAAGTGAAAAGTGCACATGAATAAGGTATCTCTGTTAATAAAGTAGAGATTTTGAGGATGGCTAAAATAGGCTCCACTATGCACAAGCAAGATTTTAAGTATTCTTTGTTGAGTAAACTTTAG

mRNA sequence

ATGGCCAGAGGCGCTTCTCAGTCCCAATCCACCTCCAGGCCCGGCGTCGGGGCTCCTCGTGGATCCGCGGCGGCGACGGCCGGCCTCCGCCGTCGCCGTCTCGGCTCCTCCACTTCCGCCGCCGGATCTACCGGACTTGTTGGCGCCGGATCAAGCGGCGGCGGCAACATGCTGAGGTTCTACACCGACGATGCTCCTGGTTTGAAGATTTCTCCGACAGTCGTCCTCGTCGTCAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTCGGTATCTCTGTTAATAAAGTAGAGATTTTGAGGATGGCTAAAATAGGCTCCACTATGCACAAGCAAGATTTTAAGTATTCTTTGTTGAGTAAACTTTAG

Coding sequence (CDS)

ATGGCCAGAGGCGCTTCTCAGTCCCAATCCACCTCCAGGCCCGGCGTCGGGGCTCCTCGTGGATCCGCGGCGGCGACGGCCGGCCTCCGCCGTCGCCGTCTCGGCTCCTCCACTTCCGCCGCCGGATCTACCGGACTTGTTGGCGCCGGATCAAGCGGCGGCGGCAACATGCTGAGGTTCTACACCGACGATGCTCCTGGTTTGAAGATTTCTCCGACAGTCGTCCTCGTCGTCAGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTCGGTATCTCTGTTAATAAAGTAGAGATTTTGAGGATGGCTAAAATAGGCTCCACTATGCACAAGCAAGATTTTAAGTATTCTTTGTTGAGTAAACTTTAG

Protein sequence

MARGASQSQSTSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGISVNKVEILRMAKIGSTMHKQDFKYSLLSKL

Homology

[Close]

BLAST of Sed0001399.1 vs. NCBI nr
Match: KAG6605540.1 (Syntaxin-71, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 86/97 (88.66%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGN 60
          MARG SQSQ    STSRPGV APRGSAAATAGLRRRRLG STS AG+TGLV  GSSGGGN
Sbjct: 1  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLG-STSGAGTTGLVSGGSSGGGN 60

Query: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
Sbjct: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 96

[Close]

BLAST of Sed0001399.1 vs. NCBI nr
Match: XP_022958107.1 (protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532.1 protein transport protein Sec61 subunit beta [Cucurbita maxima] >XP_023534505.1 protein transport protein Sec61 subunit beta [Cucurbita pepo subsp. pepo] >KAG7013903.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 86/97 (88.66%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGN 60
          MARG SQSQ    STSRPGV APRGSAAATAGLRRRRLG STS AG+TGLV  GSSGGGN
Sbjct: 1  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLG-STSGAGTTGLVSGGSSGGGN 60

Query: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
Sbjct: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 96

[Close]

BLAST of Sed0001399.1 vs. NCBI nr
Match: XP_038902812.1 (protein transport protein Sec61 subunit beta [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-31
Identity = 86/97 (88.66%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGN 60
          MARG SQSQ    STSRPGV APRGSAAATAGLRRRR G STSAA STGLVG GSSGGGN
Sbjct: 1  MARGVSQSQSTSSSTSRPGVVAPRGSAAATAGLRRRRPG-STSAAASTGLVGGGSSGGGN 60

Query: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          MLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Sbjct: 61 MLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFG 96

[Close]

BLAST of Sed0001399.1 vs. NCBI nr
Match: XP_022140347.1 (protein transport protein Sec61 subunit beta [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 3.7e-31
Identity = 84/97 (86.60%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGN 60
          MARG SQSQ    STSRPGV APRGSAAATAGLRRRRL +ST +AGS G+VGAGSSGGGN
Sbjct: 1  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRL-TSTGSAGSGGVVGAGSSGGGN 60

Query: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          MLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Sbjct: 61 MLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFG 96

[Close]

BLAST of Sed0001399.1 vs. NCBI nr
Match: XP_004149541.1 (protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypothetical protein Csa_023023 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 8.3e-31
Identity = 85/99 (85.86%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG 60
          MARGASQSQ      ST+RPGV APRGSAAATAGLRRRR G STSA+ STGLVG GSSGG
Sbjct: 1  MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPG-STSASASTGLVGGGSSGG 60

Query: 61 GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          GNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Sbjct: 61 GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFG 98

[Close]

BLAST of Sed0001399.1 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-13
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 15 GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKIS 74
          G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKIS
Sbjct: 3  GSGAPQRGSAAATASMRRRK---PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKIS 62

Query: 75 PTVVLVVSLCFIGFVTGLHVFG 94
          P VVL++S+ FI FV  LHV G
Sbjct: 63 PNVVLIMSIGFIAFVAVLHVMG 76

[Close]

BLAST of Sed0001399.1 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 4.8e-05
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 10 STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLK 69
          S+ R    A    AA +   +R+     T +AG T      S+G G M RFYT+D+PGLK
Sbjct: 13 SSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRT-----TSAGTGGMWRFYTEDSPGLK 72

Query: 70 ISPTVVLVVSLCFIGFVTGLHVFG 94
          + P  VLV+SL FI  V  LH++G
Sbjct: 73 VGPVPVLVMSLLFIASVFMLHIWG 91

[Close]

BLAST of Sed0001399.1 vs. ExPASy Swiss-Prot
Match: A8I6P9 (Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=3055 GN=SEC61B PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.8e-05
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 6  SQSQSTSRPGVGAPRGSAAAT--AGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTD 65
          SQSQ+++    G    S A T  AG  RRR    +  +G+T    A        + FYTD
Sbjct: 4  SQSQASTLVARGGRSSSNAPTGAAGALRRRPVRGSGGSGTTKAQQAA-------MNFYTD 63

Query: 66 DAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          D PG K+SP VV+ +SL FI FVT LHV G
Sbjct: 64 DTPGWKMSPVVVITMSLSFIAFVTILHVVG 86

[Close]

BLAST of Sed0001399.1 vs. ExPASy Swiss-Prot
Match: P60468 (Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 4.8e-05
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 10 STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLK 69
          S+ R    A    AA +   +R+     T +AG T      S+G G M RFYT+D+PGLK
Sbjct: 13 SSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRT-----TSAGTGGMWRFYTEDSPGLK 72

Query: 70 ISPTVVLVVSLCFIGFVTGLHVFG 94
          + P  VLV+SL FI  V  LH++G
Sbjct: 73 VGPVPVLVMSLLFIASVFMLHIWG 91

[Close]

BLAST of Sed0001399.1 vs. ExPASy Swiss-Prot
Match: Q9CQS8 (Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b PE=1 SV=3)

HSP 1 Score: 48.9 bits (115), Expect = 4.8e-05
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 10 STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGNMLRFYTDDAPGLK 69
          S+ R    A    AA +   +R+     T +AG T      S+G G M RFYT+D+PGLK
Sbjct: 13 SSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRT-----TSAGTGGMWRFYTEDSPGLK 72

Query: 70 ISPTVVLVVSLCFIGFVTGLHVFG 94
          + P  VLV+SL FI  V  LH++G
Sbjct: 73 VGPVPVLVMSLLFIAAVFMLHIWG 91

[Close]

BLAST of Sed0001399.1 vs. ExPASy TrEMBL
Match: A0A6J1JZ65 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111491039 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.2e-32
Identity = 86/97 (88.66%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGN 60
          MARG SQSQ    STSRPGV APRGSAAATAGLRRRRLG STS AG+TGLV  GSSGGGN
Sbjct: 1  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLG-STSGAGTTGLVSGGSSGGGN 60

Query: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
Sbjct: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 96

[Close]

BLAST of Sed0001399.1 vs. ExPASy TrEMBL
Match: A0A6J1H102 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111459432 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.2e-32
Identity = 86/97 (88.66%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGN 60
          MARG SQSQ    STSRPGV APRGSAAATAGLRRRRLG STS AG+TGLV  GSSGGGN
Sbjct: 1  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLG-STSGAGTTGLVSGGSSGGGN 60

Query: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG
Sbjct: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 96

[Close]

BLAST of Sed0001399.1 vs. ExPASy TrEMBL
Match: A0A6J1CGL0 (Protein transport protein Sec61 subunit beta OS=Momordica charantia OX=3673 GN=LOC111011042 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 84/97 (86.60%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MARGASQSQ----STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGGGN 60
          MARG SQSQ    STSRPGV APRGSAAATAGLRRRRL +ST +AGS G+VGAGSSGGGN
Sbjct: 1  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRL-TSTGSAGSGGVVGAGSSGGGN 60

Query: 61 MLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          MLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Sbjct: 61 MLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFG 96

[Close]

BLAST of Sed0001399.1 vs. ExPASy TrEMBL
Match: A0A0A0KHR1 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G293930 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.0e-31
Identity = 85/99 (85.86%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 1  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG 60
          MARGASQSQ      ST+RPGV APRGSAAATAGLRRRR G STSA+ STGLVG GSSGG
Sbjct: 1  MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPG-STSASASTGLVGGGSSGG 60

Query: 61 GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          GNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Sbjct: 61 GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFG 98

[Close]

BLAST of Sed0001399.1 vs. ExPASy TrEMBL
Match: A0A5D3CTD4 (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00270 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.3e-31
Identity = 85/99 (85.86%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1  MARGASQSQ------STSRPGVGAPRGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG 60
          MARGASQSQ      ST+RPGV APRGSAAATAGLRRRR G STSA  STGLVG GSSGG
Sbjct: 1  MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPG-STSATASTGLVGGGSSGG 60

Query: 61 GNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          GNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFG
Sbjct: 61 GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFG 98

[Close]

BLAST of Sed0001399.1 vs. TAIR 10
Match: AT5G60460.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-27
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1  MARGASQSQ-------STSRPGVGAPRGSAAATAGLRRRRL--GSSTSAAGSTGLVGAGS 60
          MARG+SQSQ       ST+RPG+ APRGSAAATAG+RRRRL  G   S+ G +G VG+GS
Sbjct: 1  MARGSSQSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSG-VGSGS 60

Query: 61 SGGGNMLRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFG 94
          S   NMLRFYTDDAPGLKISPTVVL++SLCFIGFVT LHVFG
Sbjct: 61 S---NMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFG 98

[Close]

BLAST of Sed0001399.1 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 77.4 bits (189), Expect = 8.9e-15
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 15 GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKIS 74
          G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKIS
Sbjct: 3  GSGAPQRGSAAATASMRRRK---PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKIS 62

Query: 75 PTVVLVVSLCFIGFVTGLHVFG 94
          P VVL++S+ FI FV  LHV G
Sbjct: 63 PNVVLIMSIGFIAFVAVLHVMG 76

[Close]

BLAST of Sed0001399.1 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 77.4 bits (189), Expect = 8.9e-15
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 15 GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKIS 74
          G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKIS
Sbjct: 3  GSGAPQRGSAAATASMRRRK---PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKIS 62

Query: 75 PTVVLVVSLCFIGFVTGLHVFG 94
          P VVL++S+ FI FV  LHV G
Sbjct: 63 PNVVLIMSIGFIAFVAVLHVMG 76

[Close]

BLAST of Sed0001399.1 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 77.4 bits (189), Expect = 8.9e-15
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 15 GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKIS 74
          G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKIS
Sbjct: 3  GSGAPQRGSAAATASMRRRK---PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKIS 62

Query: 75 PTVVLVVSLCFIGFVTGLHVFG 94
          P VVL++S+ FI FV  LHV G
Sbjct: 63 PNVVLIMSIGFIAFVAVLHVMG 76

[Close]

BLAST of Sed0001399.1 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 77.4 bits (189), Expect = 8.9e-15
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 15 GVGAP-RGSAAATAGLRRRRLGSSTSAAGSTGLVGAGSSGG--GNMLRFYTDDAPGLKIS 74
          G GAP RGSAAATA +RRR+    TS AG     G G+SGG  G+ML+FYTDDAPGLKIS
Sbjct: 3  GSGAPQRGSAAATASMRRRK---PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKIS 62

Query: 75 PTVVLVVSLCFIGFVTGLHVFG 94
          P VVL++S+ FI FV  LHV G
Sbjct: 63 PNVVLIMSIGFIAFVAVLHVMG 76

The following BLAST results are available for this feature:

BLAST of Sed0001399.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605540.1	1.3e-31	88.66	Syntaxin-71, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022958107.1	1.3e-31	88.66	protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532....	[more]
XP_038902812.1	2.9e-31	88.66	protein transport protein Sec61 subunit beta [Benincasa hispida]	[more]
XP_022140347.1	3.7e-31	86.60	protein transport protein Sec61 subunit beta [Momordica charantia]	[more]
XP_004149541.1	8.3e-31	85.86	protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypot...	[more]

BLAST of Sed0001399.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	1.3e-13	63.41	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P60467	4.8e-05	41.67	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 G...	[more]
A8I6P9	4.8e-05	43.33	Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=305...	[more]
P60468	4.8e-05	41.67	Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B P...	[more]
Q9CQS8	4.8e-05	41.67	Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b ...	[more]

BLAST of Sed0001399.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ65	6.2e-32	88.66	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H102	6.2e-32	88.66	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1CGL0	1.8e-31	86.60	Protein transport protein Sec61 subunit beta OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0KHR1	4.0e-31	85.86	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A5D3CTD4	5.3e-31	85.86	Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Sed0001399.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60460.1	3.5e-27	71.57	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.1	8.9e-15	63.41	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	8.9e-15	63.41	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.3	8.9e-15	63.41	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.4	8.9e-15	63.41	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 55..93 e-value: 8.0E-17 score: 61.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR13509:SF14	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 2..93
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 2..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0001399	Sed0001399	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0001399.1-cds	Sed0001399.1-cds-LG05:39711864..39711961	CDS
Sed0001399.1-cds	Sed0001399.1-cds-LG05:39712779..39713055	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0001399.1-exon	Sed0001399.1-exon-LG05:39711864..39711961	exon
Sed0001399.1-exon	Sed0001399.1-exon-LG05:39712779..39713055	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0001399.1	Sed0001399.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component	GO:0005784	Sec61 translocon complex
cellular_component	GO:0016021	integral component of membrane