Sed0000753.1 (mRNA) Chayote v1

Overview
NameSed0000753.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionSeed nucellus-specific protein
LocationLG05: 1243538 .. 1246693 (-)
Sequence length546
RNA-Seq ExpressionSed0000753.1
SyntenySed0000753.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATTAAGGCTCTAGTCACCATGCTTGTGGTCTCGGCAATGGCGATGACGGTTTTGCGAAACGTCGAGGGAGGAAGAGACATGGCCATGGTGAAGGAAGCAAAGGCTCAAAATCCCCATATGTTTGAGGAAAATTTGGGATATAACTACAAACCAAAGGAGGAATATGGCTGTGATGGATACAAATACAAAGATAGAGATTGCTATAAATATGGCTATTGTGACAAATTCAGGAAGGAATGCTACTGCGACGGATACAAAGGCGGAGATTGCGATGAATATGGCAACTGCGACAAATACCCCTACCCCGACAACGATGACGATTGGAGTTCGTACAAGAAACAGGCGGCCGGAAAGAATGGAGCCCATCAGAAGTATCCCTGAAAAGGGATGCAAAAACATTCCCATCATAAGCATAGTATATTGCTTATGGTTTAATTTCTATGAATAAAAAAGTATGAGATATATGTAGTAATTAAGTCTTGCTTATGGAACTTTGCTCATCTAGATATGTAAAGACCAATGTAATGGAAAGAAAGATTAATTAAAGTATGCTTATTTTCCAACTTTCTCAAACAAAATTCAAAAAGAAATCAAGAGATTATGGAACTCAAACAAGAGATAATATAATATGTTCACAAAACCTGTCTTTCAATAAAAAAGAAGTAAGGTTTGTCTAAATAAATTATGGGCCAAATATATTTCACAAGCTAAAAATCTTTTTAAAAAATTAACACAATATTTGGGCACTGTGGATTCAAACCTTCAACCTCTTGATCGAGAATACATGTCTTCACCATTGGGGTTATATAGTTTTCCCTTTATTCATTTTATGTCCTGACTTTAAAATTAGATCATCATTTGATAACTATTTGATTTTTGAAATTTTAACTTCATTTTACTCAAATTTCTTACAATATGTCTTTCTTTATTAATATTTGAATACAAACCAAATTTGTATTTGATAAAAAATAAAATTGATACATTGCGTTGATTTGATACATTCGATAGAACAAGAATCCGAAGACGATGAAATGAGTTGAAATCCTCGACTTAAAATTTACGAACAAATTTACAACTCCGGGATGAATTTTTCATATAACCCACCAAATGCTTCTTGTTGTCTCTCAAGTTAGGTCACGACGCAGTGGTCGAAGGTTAGGTGTGCTTGTTTAAGGTCTCAGGTTCAAAATTCACTCATGACTTTAATTTGTAGGTACTTCTAATATATGTTTTTTTGTACTTGGCCTAAGAATGGATGTGGTTACCCCGACCTGAATATACTAGAACTACACTTCGATTTTTCGGTTTCCAAAATAATATAGGCTTGAGTAAAATCGATTGAGATTTTCAATTTACATTTTTTTTCGTTCTAACTACAATATAAAAATAAAAATACCTCTATTTTTCATAATTACAAATCATATATGTCAACTTTAAAAAATAATACAAAAATGTTAGGACAAATAACGGAGGTATTCCACAATCATGATTCATGTCTAACGTTTCATCCAATATTTCGACCAAATTTCTTTTATTTTATTATGAAAAGTCAAAAAAGTAATATTACAAAATTTTGAAGTATAAAGACATTTTTAAGATAATTTACCCACAACAACACATCTCTCGTATTATATTTGCAGCATAATTTCTAAAATAATTCATTTATAACACATCATTTTCTATGATAGAACTCAGTCAGTAATAGAATGAGTTCTCTACTAATTGAATTCTATCAATGATAGAACACAACTAGTGATAAAACTCAATTTTCTATCAATGATAAAAATTAATTGAAATCTCTAATAGAACTCAACCTGTGATAGAACTTAATTTGTGGATTTCCAGCTACAAATAAATTAGTTTTAATTTTGTGCTATATATGAAAATATTTTACCATTTCTTATTATACATTGAAAATCCCTTTTTTTTAATAAAAGATAAAAGTTCAACAGTAATACTAGGTAATATTTTTAAAATGATTCAACTTTTTTTTAAATCAAAGTGCCTTAAACAACCGTTCTCTCCCAAGAGGAAAACCAAATTTAAACCATAAGAAATTATTAATGCTGCAATTCGTTGAACTAAATTCAAATTAACACATCATTCAAATTTTAACGTGTAATTGAAGAATATACGTAAAAAAGCTAAAGTTCAGAACAATGTATAACTTTTTATATATATATATATATATATATATATATATATATATATATATATATATATACAACTAATAAATTTGAATTCTCCTGCTCCAATAGTTATTAAACAACTATTAACAAAAAAAAAATACTGTTTCTGGTGAAATTATGAGATTTATAATGAACCATATTTGTAAACAATGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCACTTGAGTGAGCAAAAATCTACATTTTTGTAAGAATCATAATGTTGTTACATAATTTTATTTTGACCTAAAGCAAGTTGAGTGGAAGGTATTACTCTGCCCCTAAAAGTAATTATGAATCAGTAATGGCACTACCAGTATTATATATTATATATAGATCATTTGCTAAGATTTAGCAATTCCTCTGACATCAAAATAACCTCAAACCAGCTATAGCAGAAATGAAAATTGAAAACCAAATGAATTGCATAAGGACCACTCAACAACTTGTTGCCATTAGAACAAAGATTCCAATGCAGAAACCCATTAATCTTCATACTCAAAAAGCTTACCTAAATTCCATTGTGGCCTACAAATTTGGAAGCTTTCCAAAGCATTTTCATCCAAACATAAAAAAGTGAGAAACAAAAAAGAGAAGATGATGATCAGTAAGGCACTAGTCACCTTGCTTGCAGTCTCGGCAATGGCAATGGCGGTTTTGCAAAAGGTCGAAGGAGGAAGAGACATGGCCATGATGAAGGAAGCAAAGGCTCAAAATCCCCAGATGTTCAATGAAAACTTGGGGTATAACTACAAACCCAAGGAGGAATATGGCTGTGATGGATACAAATACAAAGATAGGGATTGCTACAAATACGGATACTGTGACAAATCCAGGAAGGAATGCTACTGTGACAGATACAAAGCTGGAGATTGCGACGAATATGGCAACTGCAACAAATCCCCGTACCGTGAGGACGATGATCATCAGTACAATTGGAATTCCTACAAATAA

mRNA sequence

ATGACCATTAAGGCTCTAGTCACCATGCTTGTGGTCTCGGCAATGGCGATGACGGTTTTGCGAAACTGGTCGAAGGTTAGGTGTGCTTGTTTAAGGTCTCAGAAACCCATTAATCTTCATACTCAAAAAGCTTACCTAAATTCCATTGTGGCCTACAAATTTGGAAGCTTTCCAAAGCATTTTCATCCAAACATAAAAAATAAGGCACTAGTCACCTTGCTTGCAGTCTCGGCAATGGCAATGGCGGTTTTGCAAAAGGTCGAAGGAGGAAGAGACATGGCCATGATGAAGGAAGCAAAGGCTCAAAATCCCCAGATGTTCAATGAAAACTTGGGGTATAACTACAAACCCAAGGAGGAATATGGCTGTGATGGATACAAATACAAAGATAGGGATTGCTACAAATACGGATACTGTGACAAATCCAGGAAGGAATGCTACTGTGACAGATACAAAGCTGGAGATTGCGACGAATATGGCAACTGCAACAAATCCCCGTACCGTGAGGACGATGATCATCAGTACAATTGGAATTCCTACAAATAA

Coding sequence (CDS)

ATGACCATTAAGGCTCTAGTCACCATGCTTGTGGTCTCGGCAATGGCGATGACGGTTTTGCGAAACTGGTCGAAGGTTAGGTGTGCTTGTTTAAGGTCTCAGAAACCCATTAATCTTCATACTCAAAAAGCTTACCTAAATTCCATTGTGGCCTACAAATTTGGAAGCTTTCCAAAGCATTTTCATCCAAACATAAAAAATAAGGCACTAGTCACCTTGCTTGCAGTCTCGGCAATGGCAATGGCGGTTTTGCAAAAGGTCGAAGGAGGAAGAGACATGGCCATGATGAAGGAAGCAAAGGCTCAAAATCCCCAGATGTTCAATGAAAACTTGGGGTATAACTACAAACCCAAGGAGGAATATGGCTGTGATGGATACAAATACAAAGATAGGGATTGCTACAAATACGGATACTGTGACAAATCCAGGAAGGAATGCTACTGTGACAGATACAAAGCTGGAGATTGCGACGAATATGGCAACTGCAACAAATCCCCGTACCGTGAGGACGATGATCATCAGTACAATTGGAATTCCTACAAATAA

Protein sequence

MTIKALVTMLVVSAMAMTVLRNWSKVRCACLRSQKPINLHTQKAYLNSIVAYKFGSFPKHFHPNIKNKALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCDGYKYKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPYREDDDHQYNWNSYK
Homology
[Close]
BLAST of Sed0000753.1 vs. NCBI nr
Match: KAG6606309.1 (hypothetical protein SDJN03_03626, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-31
Identity = 79/119 (66.39%), Postives = 89/119 (74.79%), Query Frame = 0 

Query: 67  NKALVTLLAVSAMAMAV--LQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCD 126
           +KALV LLAVSAMAMA+  LQ  EG         AK QNPQ+F ENLG  YK K +YGCD
Sbjct: 3   SKALVILLAVSAMAMAMTALQSAEG---------AKTQNPQVFKENLG--YKSKGDYGCD 62

Query: 127 GYKYKDRDCYKYGYCDKSRKECYCD--RYKAGDCDEYGNCNKSPYREDDDHQYNWNSYK 182
           GYKYKDRDCYKYGYCDKS ++C CD  +YK GDCDEYGNC+K+PY E  DH Y+ NSYK
Sbjct: 63  GYKYKDRDCYKYGYCDKSNEDCDCDEYKYKDGDCDEYGNCDKAPYYEAGDHPYDGNSYK 110

[Close]
BLAST of Sed0000753.1 vs. NCBI nr
Match: KAA0068070.1 (Seed nucellus-specific protein [Cucumis melo var. makuwa] >TYK26054.1 Seed nucellus-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-18
Identity = 58/123 (47.15%), Postives = 70/123 (56.91%), Query Frame = 0 

Query: 67  NKALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENL-GY-------NYKPK 126
           +K L+ +L VSA+AM +L+ VEGGR+MA  K      PQ  ++N  GY        YKPK
Sbjct: 4   SKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGYKPK 63

Query: 127 EEYGCDGYKYKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPYREDDDHQYNWN 182
           E+Y CDGYKYKD+DCY                       EYGNC+KSPY ED DHQYNW 
Sbjct: 64  EDYECDGYKYKDKDCY-----------------------EYGNCDKSPYNEDVDHQYNWG 103

[Close]
BLAST of Sed0000753.1 vs. NCBI nr
Match: TYK14008.1 (Seed nucellus-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 4.5e-17
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 0 

Query: 68  KALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCDGYK 127
           K LV +LA+S + M  ++ VEGGR+M + +  KA N  + NEN+  +YKPKEE GCDGYK
Sbjct: 6   KNLVAVLAISTLVMMFMENVEGGREMGLKEATKAYNGHVSNENV--DYKPKEEDGCDGYK 65

Query: 128 YKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPYREDDDHQYNWNSY 181
           YKD+DCY                       EYGNC KSPY + DD QYNWNS+
Sbjct: 66  YKDKDCY-----------------------EYGNCGKSPYPDYDDGQYNWNSH 93

[Close]
BLAST of Sed0000753.1 vs. NCBI nr
Match: KAE8650853.1 (hypothetical protein Csa_001704, partial [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-15
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 0 

Query: 67  NKALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCDGY 126
           +K LV +L VSAMAMA L+ VEGGR+MA+ K       Q  +EN    YKPKE+Y  +GY
Sbjct: 4   SKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENY-EGYKPKEDY--EGY 63

Query: 127 KYKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPYREDDDHQYNWNSYK 182
           K K+   Y+ GY  K   EC   +Y   DC EYGNC+KSPY ED DHQYNW   K
Sbjct: 64  KPKED--YE-GYKPKEDYECDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNK 112

[Close]
BLAST of Sed0000753.1 vs. NCBI nr
Match: KGN46573.1 (hypothetical protein Csa_005092 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-15
Identity = 53/116 (45.69%), Postives = 67/116 (57.76%), Query Frame = 0 

Query: 68  KALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCDGYK 127
           K LV +LA S +AM  ++ VEG R M + +  KA N Q+ NE + YN   ++EY CDGYK
Sbjct: 6   KNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKMEYN-PNEDEYDCDGYK 65

Query: 128 YKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPY--REDDDHQYNWNSYK 182
           YKD+DCY                       +YGNC+KSPY   +DDD QYNWNSYK
Sbjct: 66  YKDKDCY-----------------------DYGNCDKSPYDHSDDDDGQYNWNSYK 97

[Close]
BLAST of Sed0000753.1 vs. ExPASy TrEMBL
Match: A0A5A7VLH5 (Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00080 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 58/123 (47.15%), Postives = 70/123 (56.91%), Query Frame = 0 

Query: 67  NKALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENL-GY-------NYKPK 126
           +K L+ +L VSA+AM +L+ VEGGR+MA  K      PQ  ++N  GY        YKPK
Sbjct: 4   SKVLIAILVVSAVAMTLLENVEGGREMAPKKPTAKTYPQELDDNYEGYKPKEDYEGYKPK 63

Query: 127 EEYGCDGYKYKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPYREDDDHQYNWN 182
           E+Y CDGYKYKD+DCY                       EYGNC+KSPY ED DHQYNW 
Sbjct: 64  EDYECDGYKYKDKDCY-----------------------EYGNCDKSPYNEDVDHQYNWG 103

[Close]
BLAST of Sed0000753.1 vs. ExPASy TrEMBL
Match: A0A5D3CS37 (Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00050 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-17
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 0 

Query: 68  KALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCDGYK 127
           K LV +LA+S + M  ++ VEGGR+M + +  KA N  + NEN+  +YKPKEE GCDGYK
Sbjct: 6   KNLVAVLAISTLVMMFMENVEGGREMGLKEATKAYNGHVSNENV--DYKPKEEDGCDGYK 65

Query: 128 YKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPYREDDDHQYNWNSY 181
           YKD+DCY                       EYGNC KSPY + DD QYNWNS+
Sbjct: 66  YKDKDCY-----------------------EYGNCGKSPYPDYDDGQYNWNSH 93

[Close]
BLAST of Sed0000753.1 vs. ExPASy TrEMBL
Match: A0A0A0L8T2 (Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.1e-16
Identity = 60/115 (52.17%), Postives = 72/115 (62.61%), Query Frame = 0 

Query: 67  NKALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCDGY 126
           +K LV +L VSAMAMA L+ VEGGR+MA+ K       Q  +EN    YKPKE+Y  +GY
Sbjct: 4   SKVLVAILMVSAMAMAFLENVEGGREMALKKPTAKTYSQELDENY-EGYKPKEDY--EGY 63

Query: 127 KYKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPYREDDDHQYNWNSYK 182
           K K+   Y+ GY  K   EC   +Y   DC EYGNC+KSPY ED DHQYNW   K
Sbjct: 64  KPKED--YE-GYKPKEDYECDGYKYSDKDCYEYGNCDKSPYNEDIDHQYNWGPNK 112

[Close]
BLAST of Sed0000753.1 vs. ExPASy TrEMBL
Match: A0A0A0KAR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 53/116 (45.69%), Postives = 67/116 (57.76%), Query Frame = 0 

Query: 68  KALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCDGYK 127
           K LV +LA S +AM  ++ VEG R M + +  KA N Q+ NE + YN   ++EY CDGYK
Sbjct: 6   KNLVAVLAFSTLAMMFMENVEGERKMGLKEATKAYNGQVLNEKMEYN-PNEDEYDCDGYK 65

Query: 128 YKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPY--REDDDHQYNWNSYK 182
           YKD+DCY                       +YGNC+KSPY   +DDD QYNWNSYK
Sbjct: 66  YKDKDCY-----------------------DYGNCDKSPYDHSDDDDGQYNWNSYK 97

[Close]
BLAST of Sed0000753.1 vs. ExPASy TrEMBL
Match: O22351 (Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-15
Identity = 53/118 (44.92%), Postives = 68/118 (57.63%), Query Frame = 0 

Query: 65  IKNKALVTLLAVSAMAMAVLQKVEGGRDMAMMKEAKAQNPQMFNENLGYNYKPKEEYGCD 124
           I  K LV +L +SA+AMA+L+ VEGGR+M + +      P + NE     YKPKE+Y CD
Sbjct: 3   IVGKVLVAMLVISAIAMALLENVEGGREMGLKEATANAYPHVLNEKY-EGYKPKEDYECD 62

Query: 125 GYKYKDRDCYKYGYCDKSRKECYCDRYKAGDCDEYGNCNKSPY-REDDDHQYNWNSYK 182
           GYKYKD++CY                       EYGNC+KSPY  E+DD QYN + YK
Sbjct: 63  GYKYKDKNCY-----------------------EYGNCDKSPYNEEEDDRQYNGSPYK 96

The following BLAST results are available for this feature:
BLAST of Sed0000753.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606309.14.2e-3166.39hypothetical protein SDJN03_03626, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0068070.14.1e-1847.15Seed nucellus-specific protein [Cucumis melo var. makuwa] >TYK26054.1 Seed nucel... [more]
TYK14008.14.5e-1747.79Seed nucellus-specific protein [Cucumis melo var. makuwa][more]
KAE8650853.11.9e-1552.17hypothetical protein Csa_001704, partial [Cucumis sativus][more]
KGN46573.17.2e-1545.69hypothetical protein Csa_005092 [Cucumis sativus][more]
BLAST of Sed0000753.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0000753.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VLH52.0e-1847.15Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3CS372.2e-1747.79Seed nucellus-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0L8T29.1e-1652.17Seed nucellus-specific protein OS=Cucumis sativus OX=3659 GN=Csa_3G630260 PE=4 S... [more]
A0A0A0KAR73.5e-1545.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109680 PE=4 SV=1[more]
O223514.5e-1544.92Seed nucellus-specific protein OS=Citrullus lanatus OX=3654 GN=WM403 PE=4 SV=1[more]
BLAST of Sed0000753.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0000753Sed0000753gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0000753.1-cdsSed0000753.1-cds-LG05:1243538..1243883CDS
Sed0000753.1-cdsSed0000753.1-cds-LG05:1243916..1244013CDS
Sed0000753.1-cdsSed0000753.1-cds-LG05:1245507..1245542CDS
Sed0000753.1-cdsSed0000753.1-cds-LG05:1246628..1246693CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0000753.1-exonSed0000753.1-exon-LG05:1243538..1243883exon
Sed0000753.1-exonSed0000753.1-exon-LG05:1243916..1244013exon
Sed0000753.1-exonSed0000753.1-exon-LG05:1245507..1245542exon
Sed0000753.1-exonSed0000753.1-exon-LG05:1246628..1246693exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0000753.1Sed0000753.1-proteinpolypeptide