Sed0000661.2 (mRNA) Chayote v1

Overview


Name	Sed0000661.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG09: 38152411 .. 38154879 (+)
Sequence length	1823
RNA-Seq Expression	Sed0000661.2
Synteny	Sed0000661.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGACGAAATTTGATAAGCCAAAGCCAATTTAACATAATAAAATAAAACTAAATACAGAGAACTGCCCGAGAGCTACAACCCACCAAATAAAGCTAATGGCGGGTCCACACGGGCAGCCCTAAACACTACCCCAACTGCCCGAAATCCAATTTCAAATCCCAAATCCAAATCTTCTCATCTTTACCCATTTTTCACGGCCAAAAGATCAGATCCGAAACTCCCACAAATGTCCGCCACCGCCACCGCCACCGCCACCGCCGCCGTCACCACCGCCGTCTCGGCCGCTGCGGAGCGGCACACATACTGGTGCCACGAATGCGACATGAGCGTCACCTTGCTTTCCCCTTCTTCTTCATCTCTCATTTGCCCTCACTGCTTCACCGATTACCTCGAACACATGGATTTCACCAACCCCATTTCCGGCCACCCGCCGGACTCCGATGACCTTCCGGCCACCACCTCCGACGACAATAACCTCCTCAACAGCCCCCAATTCCTCCGCCTCTTCCAAGACCTAGCCGATTCGCCGCCCGATTCCGATGTCGCCGCCTTCACTCCAATCAAGCCCTCTGTAATGGCGATTCCCACCATTAAAGTCTCCTCCACCATGCTCGAGCAAGACCCAGTTCTACTTTGCGCCATTTGCAAGGATCCATTCCTTCTCGAAGTTGAAGCCAAACGGCTCCCCTGTTCTCATCTTTACCACCCAGATTGTATCCTTCCTTGGCTTTCGAATCATGATTCTTGCCCCCTTTGTCGATTTAAGCTTCCATCTGATGAGATTTATGAGCTTGATCAACGTCGAGGGGCGGCGACGACGGTGGCGTTGATGAGGGCTAGGGATTTGATGCATCAGGAGGATAGTTATGGGTTGGGGACTACTCTAAGGCATATTGCTAGAAGGCACAATTCTGTTTTTGGTGAGGGAATTCAAGTGGATTCTGAGAATGTTTCTAGTGTGGCTAATGGTGGTGTGATTGTGATTGTTGATAGCAGTGGTGATGAGAATGAGGTTGTGGGAATTGATGGATCTGTAGTTGAGGATGCCGGCTCTGTAGTTTAGGATCTTGGAGTTTTGTTTCTGCCAATTTGAGGTTTGTTTCTCCCTTTTGATTGATGTTTTTTGTTTATTCTTTATGTTCTTGTAGTTTATGTTTGATGAGAGTGATTTCTGTATTGGATTTGGAATGAAAGAACTTATGTTTGATATGAATCAATTTGACATAGACTGGCTTGTTATACTTCAAACCTTTAGTGTAGGAGTTCATTGTCAATTTATACGCATCTCGATTATTCTCTCATTGAGGAAATTCATTCCTAAATAGATGACCACTGTGGATTAAATGCATAATCTATTAGATCCTCAAGACCTTTGTCCACTAAGCCAATCTATTAGATGGTTTAGGGTAGGAGTTCATTTAGTATGGATTTGAGTTCTACAACTTATTGGTTGGCATCCATGTTGAGCATATTGGTTTTAGATTAAAGATCGAAGCTTGATCCAAGCTTAACCTTGATGTTAAAAATCAAAACTTAGTCTTGAGGTGGATAAATTGTATCTGGTTGGTGATTAAAACATTTACTATATGTAATATCAAAATCTTTCATTCTATAATTGGAAGCTCTTTCTTGCATTGCATAATGTTTTAAGTTTTTTTATGTTCAAAAGTGAGATTTCTACTTCTACTTTCTCTAAAACCGCCTTAAATCTTATGACATTACTCCTTCGATGTCTTCCAGTGCCTGGCCTAGGGATGGGCGTGGTTACCTTTGTTTCAAAAATAAAACAGCTTTAAATACGACAAGCTTACACGGTTCGTACTTCTGTGCTCGAGTTGAGTTCTAAAAAACCACCTTAAATCCGTAAAAATCCTATCGTCCTAAGCATTTGTAATGAGCTGGATAGTTCTAAGGATGTATGCATTTAATCAACTTATGGCATGGCTAGTAAAATCACTTCCCTTCAAAGTGATGTTTAATCATTTTGCTTGCATTGGACGAATCTTAATGTTTACATGTTTCCTTAAAGCTAAAGTTTCTTTGTCAAACATTTTTTTTTATCTTATAAGTAATGTCATTTATTTGTTTTGTTACTGCAGGTAATATAGTAGAATATGCTTGTTAGAGAAATCTTAGAAAGCTACCCAAGTAAATGATTGATTTGAAGTGTAAATTTCTACAGCAAAAAGACTCTTCTACCCCTTCGTCTCTTCCTTTTTTTCCTTCTATTTTTCATATTTGGTAACCATGTCTCTACATAATAAGGTTTGAACCTTATGTACAATGTTTTTCCCTACCCTCTTCCCCAGTTCCTCTCTTTCAGTCATGGTTTGAATCAATGAGTATATGTATCAATATCTCTCTATAAAAAGCTCCTAAGTTTGAATCTTCTTTACCTTCATTGTCTGCTCTTTTTAAAATATATATATATATAAT

mRNA sequence

TAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGACGAAATTTGATAAGCCAAAGCCAATTTAACATAATAAAATAAAACTAAATACAGAGAACTGCCCGAGAGCTACAACCCACCAAATAAAGCTAATGGCGGGTCCACACGGGCAGCCCTAAACACTACCCCAACTGCCCGAAATCCAATTTCAAATCCCAAATCCAAATCTTCTCATCTTTACCCATTTTTCACGGCCAAAAGATCAGATCCGAAACTCCCACAAATGTCCGCCACCGCCACCGCCACCGCCACCGCCGCCGTCACCACCGCCGTCTCGGCCGCTGCGGAGCGGCACACATACTGGTGCCACGAATGCGACATGAGCGTCACCTTGCTTTCCCCTTCTTCTTCATCTCTCATTTGCCCTCACTGCTTCACCGATTACCTCGAACACATGGATTTCACCAACCCCATTTCCGGCCACCCGCCGGACTCCGATGACCTTCCGGCCACCACCTCCGACGACAATAACCTCCTCAACAGCCCCCAATTCCTCCGCCTCTTCCAAGACCTAGCCGATTCGCCGCCCGATTCCGATGTCGCCGCCTTCACTCCAATCAAGCCCTCTGTAATGGCGATTCCCACCATTAAAGTCTCCTCCACCATGCTCGAGCAAGACCCAGTTCTACTTTGCGCCATTTGCAAGGATCCATTCCTTCTCGAAGTTGAAGCCAAACGGCTCCCCTGTTCTCATCTTTACCACCCAGATTGTATCCTTCCTTGGCTTTCGAATCATGATTCTTGCCCCCTTTGTCGATTTAAGCTTCCATCTGATGAGATTTATGAGCTTGATCAACGTCGAGGGGCGGCGACGACGGTGGCGTTGATGAGGGCTAGGGATTTGATGCATCAGGAGGATAGTTATGGGTTGGGGACTACTCTAAGGCATATTGCTAGAAGGCACAATTCTGTTTTTGGTGAGGGAATTCAAGTGGATTCTGAGAATGTTTCTAGTGTGGCTAATGGTGGTGTGATTGTGATTGTTGATAGCAGTGGTGATGAGAATGAGGTTGTGGGAATTGATGGATCTGTAGTTGAGGATGCCGGCTCTGTAGTTTAGGATCTTGGAGTTTTGTTTCTGCCAATTTGAGTGCCTGGCCTAGGGATGGGCGTGGTTACCTTTGTTTCAAAAATAAAACAGCTTTAAATACGACAAGCTTACACGGTTCGTACTTCTGTGCTCGAGTTGAGTTCTAAAAAACCACCTTAAATCCGTAAAAATCCTATCGTCCTAAGCATTTGTAATGAGCTGGATAGTTCTAAGGATGTATGCATTTAATCAACTTATGGCATGGCTAGTAAAATCACTTCCCTTCAAAGTGATGTTTAATCATTTTGCTTGCATTGGACGAATCTTAATGTTTACATGTTTCCTTAAAGCTAAAGTTTCTTTGTCAAACATTTTTTTTTATCTTATAAGTAATGTCATTTATTTGTTTTGTTACTGCAGGTAATATAGTAGAATATGCTTGTTAGAGAAATCTTAGAAAGCTACCCAAGTAAATGATTGATTTGAAGTGTAAATTTCTACAGCAAAAAGACTCTTCTACCCCTTCGTCTCTTCCTTTTTTTCCTTCTATTTTTCATATTTGGTAACCATGTCTCTACATAATAAGGTTTGAACCTTATGTACAATGTTTTTCCCTACCCTCTTCCCCAGTTCCTCTCTTTCAGTCATGGTTTGAATCAATGAGTATATGTATCAATATCTCTCTATAAAAAGCTCCTAAGTTTGAATCTTCTTTACCTTCATTGTCTGCTCTTTTTAAAATATATATATATATAAT

Coding sequence (CDS)

ATGTCCGCCACCGCCACCGCCACCGCCACCGCCGCCGTCACCACCGCCGTCTCGGCCGCTGCGGAGCGGCACACATACTGGTGCCACGAATGCGACATGAGCGTCACCTTGCTTTCCCCTTCTTCTTCATCTCTCATTTGCCCTCACTGCTTCACCGATTACCTCGAACACATGGATTTCACCAACCCCATTTCCGGCCACCCGCCGGACTCCGATGACCTTCCGGCCACCACCTCCGACGACAATAACCTCCTCAACAGCCCCCAATTCCTCCGCCTCTTCCAAGACCTAGCCGATTCGCCGCCCGATTCCGATGTCGCCGCCTTCACTCCAATCAAGCCCTCTGTAATGGCGATTCCCACCATTAAAGTCTCCTCCACCATGCTCGAGCAAGACCCAGTTCTACTTTGCGCCATTTGCAAGGATCCATTCCTTCTCGAAGTTGAAGCCAAACGGCTCCCCTGTTCTCATCTTTACCACCCAGATTGTATCCTTCCTTGGCTTTCGAATCATGATTCTTGCCCCCTTTGTCGATTTAAGCTTCCATCTGATGAGATTTATGAGCTTGATCAACGTCGAGGGGCGGCGACGACGGTGGCGTTGATGAGGGCTAGGGATTTGATGCATCAGGAGGATAGTTATGGGTTGGGGACTACTCTAAGGCATATTGCTAGAAGGCACAATTCTGTTTTTGGTGAGGGAATTCAAGTGGATTCTGAGAATGTTTCTAGTGTGGCTAATGGTGGTGTGATTGTGATTGTTGATAGCAGTGGTGATGAGAATGAGGTTGTGGGAATTGATGGATCTGTAGTTGAGGATGCCGGCTCTGTAGTTTAG

Protein sequence

MSATATATATAAVTTAVSAAAERHTYWCHECDMSVTLLSPSSSSLICPHCFTDYLEHMDFTNPISGHPPDSDDLPATTSDDNNLLNSPQFLRLFQDLADSPPDSDVAAFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDSYGLGTTLRHIARRHNSVFGEGIQVDSENVSSVANGGVIVIVDSSGDENEVVGIDGSVVEDAGSVV

Homology

[Close]

BLAST of Sed0000661.2 vs. NCBI nr
Match: XP_023549060.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.2 bits (892), Expect = 6.5e-92
Identity = 202/325 (62.15%), Postives = 228/325 (70.15%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP-------------SSSSLICPHCFTDYLEH 70
           ++ + A +AAAERHTYWCHECDMSVTL+SP             SSSSL+CPHC TD+LEH
Sbjct: 2   SSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLEH 61

Query: 71  MDFTNP-----ISGH------PPDSD-------DLPATTSDDNNLLNSPQFLRLFQDLAD 130
           MDFT P     IS H      PPDSD       D   TTSDDN LL+SPQFLRLFQ LAD
Sbjct: 62  MDFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLAD 121

Query: 131 SPPDSDVA------AFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRL 190
           S  DSD A       FTPIK SVMAIPTIKVSS MLE+DP+L+CAICKD FLLEVEAK+L
Sbjct: 122 S-SDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQL 181

Query: 191 PCSHLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDS 250
           PCSHLYHPDCILPWLSNHDSCPLCR+KLPSDE  +  + RGA  T+AL+RARDLM QEDS
Sbjct: 182 PCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGA--TMALLRARDLMPQEDS 241

Query: 251 YGLGTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIV 278
           YGL TTL H+ARRH+S+F EG+QVDS                     E VSSVA    IV
Sbjct: 242 YGLRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIV 301

[Close]

BLAST of Sed0000661.2 vs. NCBI nr
Match: XP_022953211.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 6.5e-92
Identity = 202/325 (62.15%), Postives = 228/325 (70.15%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP-------------SSSSLICPHCFTDYLEH 70
           ++ + A +AAAERHTYWCHECDMSVTL+SP             SSSSL+CPHC TD+LEH
Sbjct: 2   SSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLEH 61

Query: 71  MDFTNP-----ISGH------PPDSD-------DLPATTSDDNNLLNSPQFLRLFQDLAD 130
           MDFT P     IS H      PPDSD       D   TTSDDN LL+SPQFLRLFQ LAD
Sbjct: 62  MDFTIPTSSSSISDHPGSSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLAD 121

Query: 131 SPPDSDVA------AFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRL 190
           S  DSD A       FTPIK SVMAIPTIKVSS MLE+DP+L+CAICKD FLLEVEAK+L
Sbjct: 122 S-SDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQL 181

Query: 191 PCSHLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDS 250
           PCSHLYHPDCILPWLSNHDSCPLCR+KLPSDE  +  + RGA  T+AL+RARDLM QEDS
Sbjct: 182 PCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGA--TMALLRARDLMPQEDS 241

Query: 251 YGLGTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIV 278
           YGL TTL H+ARRH+S+F EG+QVDS                     E VSSVA    IV
Sbjct: 242 YGLRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIV 301

[Close]

BLAST of Sed0000661.2 vs. NCBI nr
Match: XP_038899359.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 345.5 bits (885), Expect = 4.2e-91
Identity = 199/321 (61.99%), Postives = 222/321 (69.16%), Query Frame = 0


Query: 9   ATAAVTTAVSAAAERHTYWCHECDMSVTLLSP------SSSSLICPHCFTDYLEHMDFTN 68
           + +A T   + AAERHTYWCHECDMSVTL+SP      SSSSL+CPHC TD+LEHMDFT 
Sbjct: 3   SASAATVTATTAAERHTYWCHECDMSVTLVSPSSSSSSSSSSLLCPHCLTDFLEHMDFTI 62

Query: 69  P-----ISGH------PPDSD-------DLPATTSDDNNLLNSPQFLRLFQDLADSPPDS 128
           P     IS H      PPDSD       D    T+DDN LLNSPQFLRLFQ LADS  DS
Sbjct: 63  PTSSSSISDHPNSSSSPPDSDPSSFVVVDPIPITTDDNYLLNSPQFLRLFQQLADS-SDS 122

Query: 129 DVA------AFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHL 188
           D         FTPIK SVMAIPTIKV+S +LE+DPVL+CAICKD FLLEVEAK+LPCSHL
Sbjct: 123 DFVPSVPFNPFTPIKASVMAIPTIKVTSALLEEDPVLICAICKDQFLLEVEAKQLPCSHL 182

Query: 189 YHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDSYGLGT 248
           YHPDCILPWLSNHDSCPLCRFKLPSD+    D  R    T AL+RARDL+HQEDSYGL T
Sbjct: 183 YHPDCILPWLSNHDSCPLCRFKLPSDD--PSDHVRCRRATTALLRARDLIHQEDSYGLRT 242

Query: 249 TLRHIARRHNSVFGEGIQVD---------------------SENVSSVANGGVIVIVDSS 279
           TL H+ARRH S++ EGIQVD                      E VSSVA    IVIV+S+
Sbjct: 243 TLEHMARRHISIYSEGIQVDLSQSSTQFGVAEMGNGEQTDSVETVSSVATDDGIVIVNSN 302

[Close]

BLAST of Sed0000661.2 vs. NCBI nr
Match: XP_022991911.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita maxima])

HSP 1 Score: 345.1 bits (884), Expect = 5.5e-91
Identity = 200/324 (61.73%), Postives = 227/324 (70.06%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP------------SSSSLICPHCFTDYLEHM 70
           ++ + A +AAAERHTYWCHECDMSVTL+SP            SSSSL+CPHC TD+LEHM
Sbjct: 2   SSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSLLCPHCLTDFLEHM 61

Query: 71  DFTNP-----ISGH------PPDSD-------DLPATTSDDNNLLNSPQFLRLFQDLADS 130
           DFT P     IS H      PPDSD       D   TTSDDN LL+SPQFLRLFQ LADS
Sbjct: 62  DFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLADS 121

Query: 131 PPDSDVA------AFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLP 190
             DSD A       FTPIK SVMAIPTIKVSS MLE+DP+L+CAICKD FLL+VEAK+LP
Sbjct: 122 -SDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLDVEAKQLP 181

Query: 191 CSHLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDSY 250
           CSHLYHPDCILPWLSNHDSCPLCR+KLPSDE  +  + RGA  T+AL+RARDLM QEDSY
Sbjct: 182 CSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGA--TMALLRARDLMPQEDSY 241

Query: 251 GLGTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIVI 278
           GL TTL H+ARRH+S+F EG+QVD                      E VSSVA    IVI
Sbjct: 242 GLRTTLEHMARRHSSIFSEGVQVDPSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIVI 301

[Close]

BLAST of Sed0000661.2 vs. NCBI nr
Match: KAG7014205.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.0 bits (868), Expect = 4.0e-89
Identity = 196/311 (63.02%), Postives = 218/311 (70.10%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP------------SSSSLICPHCFTDYLEHM 70
           ++ + A +AAAERHTYWCHECDMSVTL+SP            SSSSL+CPHC TD+LEHM
Sbjct: 2   SSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSLLCPHCLTDFLEHM 61

Query: 71  DFTNP-----ISGH------PPDSD-------DLPATTSDDNNLLNSPQFLRLFQDLADS 130
           DFT P     IS H      PPDSD       D   TTSDDN LL+SPQFLRLFQ LADS
Sbjct: 62  DFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLADS 121

Query: 131 PPDSDVA------AFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLP 190
             DSD A       FTPIK SVMAIPTIKVSS MLE+DP+L+CAICKD FLLEVEAK+LP
Sbjct: 122 -SDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQLP 181

Query: 191 CSHLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDSY 250
           CSHLYHPDCILPWLSNHDSCPLCR+KLPSDE  +  + RGA  T+AL+RARDLM QEDSY
Sbjct: 182 CSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGA--TMALLRARDLMPQEDSY 241

Query: 251 GLGTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIVI 265
           GL TTL H+ARRH+S+F EG+QVDS                     E VSSVA    IVI
Sbjct: 242 GLRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIVI 301

[Close]

BLAST of Sed0000661.2 vs. ExPASy Swiss-Prot
Match: O22283 (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-18
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 113 KPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHD 172
           K ++ A+P I++  T L  D    CA+CK+ F+L+  A+ +PC+H+YHPDCILPWL+  +
Sbjct: 177 KSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRN 236

Query: 173 SCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDS 214
           SCP+CR +LP++   +L    GAA T     A +   +EDS
Sbjct: 237 SCPVCRHELPAE---DLTDGTGAALTAVTATAEE---EEDS 271

[Close]

BLAST of Sed0000661.2 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-17
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 57  HMDFTNPISGHPPD-SDDLPATTSDDNNLLNSPQFLRLFQDLADSPPDSDVAAFTPIKPS 116
           H +F   I  HP D  + +P    D       P   +L Q LA++ P+         K +
Sbjct: 142 HFEFV--IENHPSDPGNRMPGNFGD---YFFGPGLEQLIQQLAENDPNR-YGTPPASKSA 201

Query: 117 VMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHDSCP 176
           + A+PT+KV+  ML+ + +  CA+C D F    + K++PC H++H DC+LPWL  H+SCP
Sbjct: 202 IDALPTVKVTKDMLKSE-MNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCP 261

Query: 177 LCRFKLPSDE 186
           +CRF+LP+D+
Sbjct: 262 VCRFELPTDD 264

[Close]

BLAST of Sed0000661.2 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-16
Identity = 37/88 (42.05%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 113 KPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHD 172
           K ++ A+ T +VSS+  E + V++CA+CKD  ++    K+LPC H YH DCI+PWL   +
Sbjct: 235 KSAIEALETFEVSSS--EGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRN 294

Query: 173 SCPLCRFKLPSDEIYELDQRRGAATTVA 201
           SCP+CRF+L +D+    ++R+   +TV+
Sbjct: 295 SCPVCRFQLETDDAEYEEERKKRTSTVS 320

[Close]

BLAST of Sed0000661.2 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-16
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 113 KPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHD 172
           K S+ A+PTIK++   L+      C +CKD F L+ EAK++PC H+YH DCI+PWL  H+
Sbjct: 163 KSSIDALPTIKITQKHLKSSD-SHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHN 222

Query: 173 SCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDS 214
           SCP+CR +LPS         RG++++    + R    +E+S
Sbjct: 223 SCPVCRKELPS---------RGSSSSTQSSQNRSTNGRENS 253

[Close]

BLAST of Sed0000661.2 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.1e-16
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 64  ISGHPPDSD-DLPATTSDDNNLLNSPQFLRLFQDLADSPPDSDVAAFTPIKPSVMAIPTI 123
           I  +P D    LPA   D       P   +L Q LA++ P+         K ++ A+P +
Sbjct: 155 IQNNPSDQGFRLPANIGD---YFIGPGLEQLIQQLAENDPNR-YGTPPASKSAIEALPLV 214

Query: 124 KVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHDSCPLCRFKLP 183
            ++ + L  +    CA+C D F    EAK++PC HLYH DC+LPWL  H+SCP+CR +LP
Sbjct: 215 NITKSNLNSE-FNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELP 274

Query: 184 SDEIYELDQRRGAATT 199
           +D+     + RGA  T
Sbjct: 275 TDDPDYERRVRGAQGT 285

[Close]

BLAST of Sed0000661.2 vs. ExPASy TrEMBL
Match: A0A6J1GMD4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111455823 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 3.2e-92
Identity = 202/325 (62.15%), Postives = 228/325 (70.15%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP-------------SSSSLICPHCFTDYLEH 70
           ++ + A +AAAERHTYWCHECDMSVTL+SP             SSSSL+CPHC TD+LEH
Sbjct: 2   SSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSSLLCPHCLTDFLEH 61

Query: 71  MDFTNP-----ISGH------PPDSD-------DLPATTSDDNNLLNSPQFLRLFQDLAD 130
           MDFT P     IS H      PPDSD       D   TTSDDN LL+SPQFLRLFQ LAD
Sbjct: 62  MDFTIPTSSSSISDHPGSSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLAD 121

Query: 131 SPPDSDVA------AFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRL 190
           S  DSD A       FTPIK SVMAIPTIKVSS MLE+DP+L+CAICKD FLLEVEAK+L
Sbjct: 122 S-SDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLEVEAKQL 181

Query: 191 PCSHLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDS 250
           PCSHLYHPDCILPWLSNHDSCPLCR+KLPSDE  +  + RGA  T+AL+RARDLM QEDS
Sbjct: 182 PCSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGA--TMALLRARDLMPQEDS 241

Query: 251 YGLGTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIV 278
           YGL TTL H+ARRH+S+F EG+QVDS                     E VSSVA    IV
Sbjct: 242 YGLRTTLEHMARRHSSIFSEGVQVDSSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIV 301

[Close]

BLAST of Sed0000661.2 vs. ExPASy TrEMBL
Match: A0A6J1JS41 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111488408 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.7e-91
Identity = 200/324 (61.73%), Postives = 227/324 (70.06%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP------------SSSSLICPHCFTDYLEHM 70
           ++ + A +AAAERHTYWCHECDMSVTL+SP            SSSSL+CPHC TD+LEHM
Sbjct: 2   SSASAATAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSSLLCPHCLTDFLEHM 61

Query: 71  DFTNP-----ISGH------PPDSD-------DLPATTSDDNNLLNSPQFLRLFQDLADS 130
           DFT P     IS H      PPDSD       D   TTSDDN LL+SPQFLRLFQ LADS
Sbjct: 62  DFTIPTSSSSISDHPISSSSPPDSDPSSFVIVDPLPTTSDDNYLLSSPQFLRLFQQLADS 121

Query: 131 PPDSDVA------AFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLP 190
             DSD A       FTPIK SVMAIPTIKVSS MLE+DP+L+CAICKD FLL+VEAK+LP
Sbjct: 122 -SDSDFAPSVPFNPFTPIKASVMAIPTIKVSSAMLEEDPILICAICKDKFLLDVEAKQLP 181

Query: 191 CSHLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDSY 250
           CSHLYHPDCILPWLSNHDSCPLCR+KLPSDE  +  + RGA  T+AL+RARDLM QEDSY
Sbjct: 182 CSHLYHPDCILPWLSNHDSCPLCRYKLPSDEPSDHVRCRGA--TMALLRARDLMPQEDSY 241

Query: 251 GLGTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIVI 278
           GL TTL H+ARRH+S+F EG+QVD                      E VSSVA    IVI
Sbjct: 242 GLRTTLEHMARRHSSIFSEGVQVDPSQSPTQLGVAVMGNGEQTDSVETVSSVATDDGIVI 301

[Close]

BLAST of Sed0000661.2 vs. ExPASy TrEMBL
Match: A0A5D3CET0 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001260 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 9.5e-89
Identity = 195/323 (60.37%), Postives = 217/323 (67.18%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP----------SSSSLICPHCFTDYLEHMDF 70
           ++ T   +AAAERHTYWCHECDMSVTL+SP          SSSSL+CPHC TD+LEHMDF
Sbjct: 2   SSATITATAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSLLCPHCLTDFLEHMDF 61

Query: 71  TNP-----ISGHPPDS--------------DDLPATTSDDNNLLNSPQFLRLFQDLADSP 130
           T P     IS HP  S              D LP  TSDDN LLNSPQFLRLFQ LADS 
Sbjct: 62  TIPTSSSSISDHPNSSSSPTDSDPSSFVVVDPLP-ITSDDNYLLNSPQFLRLFQHLADSS 121

Query: 131 -----PDSDVAAFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCS 190
                P      FTPIK SVMAIPTIKV+S +L++DPVL+CAICKD FLLEVEAK+LPCS
Sbjct: 122 ESDFVPSVPFNPFTPIKASVMAIPTIKVTSALLDEDPVLICAICKDQFLLEVEAKQLPCS 181

Query: 191 HLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDSYGL 250
           HLYHPDCILPWLSNHDSCPLCRFKLPSD+       R    T AL+RARDLMHQEDSYGL
Sbjct: 182 HLYHPDCILPWLSNHDSCPLCRFKLPSDD----PSDRVRCRTSALLRARDLMHQEDSYGL 241

Query: 251 GTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIVIVD 279
            TTL  +ARRH+S+  EGI VDS                     E VSSVA    IVIV+
Sbjct: 242 RTTLELMARRHSSISSEGIHVDSFQSPTQFGVAMMRSGEQTDSVETVSSVATDDGIVIVN 301

[Close]

BLAST of Sed0000661.2 vs. ExPASy TrEMBL
Match: A0A0A0KBK3 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G429620 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.8e-88
Identity = 193/323 (59.75%), Postives = 217/323 (67.18%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP-----------SSSSLICPHCFTDYLEHMD 70
           ++ T   +AAAERHTYWCHECDMSVTL+SP           SSSSL+CPHC TD++EHMD
Sbjct: 2   SSATITATAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSSLVCPHCLTDFIEHMD 61

Query: 71  FT----------NPISGHPP-DSD-------DLPATTSDDNNLLNSPQFLRLFQDLADSP 130
           FT          NP S  PP DSD       D    TSDDN LLNSPQFLRLFQ LADS 
Sbjct: 62  FTIPTSSSSISDNPNSSSPPTDSDPSSFVFVDPLPITSDDNYLLNSPQFLRLFQHLADSS 121

Query: 131 -----PDSDVAAFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCS 190
                P      FTPIK SVMAIPTIKV+S +L++DPVL+CAICKD FLLEVEAK+LPCS
Sbjct: 122 ESDFVPSVPFNPFTPIKASVMAIPTIKVTSALLDEDPVLICAICKDQFLLEVEAKQLPCS 181

Query: 191 HLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDSYGL 250
           HLYHPDCILPWLSNHDSCPLCRFKLPSD+       R    T AL+RARDLMHQEDSYGL
Sbjct: 182 HLYHPDCILPWLSNHDSCPLCRFKLPSDD----PSDRVRCRTSALLRARDLMHQEDSYGL 241

Query: 251 GTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIVIVD 279
            TTL  +ARRH+S+  EGI VDS                     E VSSVA    IVIV+
Sbjct: 242 RTTLELMARRHSSISSEGIHVDSFQSPTQFGVAMMESGEQTDSVETVSSVATDDGIVIVN 301

[Close]

BLAST of Sed0000661.2 vs. ExPASy TrEMBL
Match: A0A1S3CE92 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103499880 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 8.1e-88
Identity = 194/323 (60.06%), Postives = 216/323 (66.87%), Query Frame = 0


Query: 11  AAVTTAVSAAAERHTYWCHECDMSVTLLSP----------SSSSLICPHCFTDYLEHMDF 70
           ++ T   +AAAERHTYWCHECDMSVTL+SP          SSSSL+CPHC TD+LEHMDF
Sbjct: 2   SSATITAAAAAERHTYWCHECDMSVTLVSPSSSSSSSSSSSSSSLLCPHCLTDFLEHMDF 61

Query: 71  TNP-----ISGHPPDS--------------DDLPATTSDDNNLLNSPQFLRLFQDLADSP 130
           T P     IS HP  S              D LP  TSDDN LLNSPQFLRLFQ LADS 
Sbjct: 62  TIPTSSSSISDHPNSSSSPTDSDPSSFVVVDPLP-ITSDDNYLLNSPQFLRLFQHLADSS 121

Query: 131 -----PDSDVAAFTPIKPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCS 190
                P      FTPIK SVMAIPTIKV+S +L++D VL+CAICKD FLLEVEAK+LPCS
Sbjct: 122 ESDFVPSVPFNPFTPIKASVMAIPTIKVTSALLDEDQVLICAICKDQFLLEVEAKQLPCS 181

Query: 191 HLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDSYGL 250
           HLYHPDCILPWLSNHDSCPLCRFKLPSD+       R    T AL+RARDLMHQEDSYGL
Sbjct: 182 HLYHPDCILPWLSNHDSCPLCRFKLPSDD----PSDRVRCRTSALLRARDLMHQEDSYGL 241

Query: 251 GTTLRHIARRHNSVFGEGIQVDS---------------------ENVSSVANGGVIVIVD 279
            TTL  +ARRH+S+  EGI VDS                     E VSSVA    IVIV+
Sbjct: 242 RTTLELMARRHSSISSEGINVDSFQSPTQFGVAMMRSGEQTDSVETVSSVATDDGIVIVN 301

[Close]

BLAST of Sed0000661.2 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.9 bits (429), Expect = 3.0e-42
Identity = 104/265 (39.25%), Postives = 146/265 (55.09%), Query Frame = 0


Query: 8   TATAAVTTAVSAAAERHTYWCHECDMSVTLLSPS-----SSSLICPHCFTDYLEHMDFTN 67
           +++   TT V    ER TYWCHECDMS++LLS S     SS L+CP C  D+LE MD  +
Sbjct: 2   SSSTTTTTTVHGEPERRTYWCHECDMSLSLLSSSDSDSDSSPLLCPQCRVDFLERMDHDS 61

Query: 68  PIS--------------GHPPDSDDL-------PATTSDDNNLLNSPQFLRLFQDLADSP 127
             S              G   D DD        PA  SDDN LL+SP   RL + LA   
Sbjct: 62  SSSNLFDVTIGDFEEQDGENDDEDDEEDWCFVDPAVNSDDNFLLDSPYLHRLLRHLASDN 121

Query: 128 PDSDVAAFTPIKPSVM------AIPTIKVSSTML------EQDPVLLCAICKDPFLLEVE 187
             S  ++ +    S++      +IPTI++SS++L      + D VLLCA+CK+ F++   
Sbjct: 122 SGSSSSSSSSSSSSLLKSSDIDSIPTIQISSSLLCSTDDSDPDSVLLCAVCKEDFIIGES 181

Query: 188 AKRLPCSHLYHPDCILPWLSNHDSCPLCRFKLPSDEIYELD----QRRGAATTVALMRAR 231
           A+RLPCSH+YH DCI+PWLS+H+SCPLCRF+LP+     +     + R   + +A + A 
Sbjct: 182 ARRLPCSHIYHSDCIVPWLSDHNSCPLCRFELPTTAKVGIGGSEAEMRIRLSDLATIAAD 241

[Close]

BLAST of Sed0000661.2 vs. TAIR 10
Match: AT2G39720.1 (RING-H2 finger C2A )

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-19
Identity = 43/101 (42.57%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 113 KPSVMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHD 172
           K ++ A+P I++  T L  D    CA+CK+ F+L+  A+ +PC+H+YHPDCILPWL+  +
Sbjct: 177 KSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRN 236

Query: 173 SCPLCRFKLPSDEIYELDQRRGAATTVALMRARDLMHQEDS 214
           SCP+CR +LP++   +L    GAA T     A +   +EDS
Sbjct: 237 SCPVCRHELPAE---DLTDGTGAALTAVTATAEE---EEDS 271

[Close]

BLAST of Sed0000661.2 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-19
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 118 AIPTIKVSSTML----EQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHDS 177
           ++PTIK+SS+ML      D  L CAIC++ F++   A+RLPC+HLYH DCI+PWL++H+S
Sbjct: 73  SLPTIKISSSMLSSASSDDSALPCAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNS 132

Query: 178 CPLCRFKLP 183
           CPLCR +LP
Sbjct: 133 CPLCRVELP 141

[Close]

BLAST of Sed0000661.2 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-18
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 57  HMDFTNPISGHPPD-SDDLPATTSDDNNLLNSPQFLRLFQDLADSPPDSDVAAFTPIKPS 116
           H +F   I  HP D  + +P    D       P   +L Q LA++ P+         K +
Sbjct: 142 HFEFV--IENHPSDPGNRMPGNFGD---YFFGPGLEQLIQQLAENDPNR-YGTPPASKSA 201

Query: 117 VMAIPTIKVSSTMLEQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHDSCP 176
           + A+PT+KV+  ML+ + +  CA+C D F    + K++PC H++H DC+LPWL  H+SCP
Sbjct: 202 IDALPTVKVTKDMLKSE-MNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCP 261

Query: 177 LCRFKLPSDE 186
           +CRF+LP+D+
Sbjct: 262 VCRFELPTDD 264

[Close]

BLAST of Sed0000661.2 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-17
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 70  DSDDLPATTSDDNNLLNSPQFLRLFQDLADSPPDSDVAAFTPIKPSVMAIPTIKVSSTML 129
           D D +PA +  D  +   P F  L Q LA++ P+         K +V A+ T+K+  T  
Sbjct: 166 DMDSVPAGSLGDYFI--GPGFEMLLQRLAENDPNR-YGTPPAKKEAVEALATVKIEET-- 225

Query: 130 EQDPVLLCAICKDPFLLEVEAKRLPCSHLYHPDCILPWLSNHDSCPLCRFKLPSDE 186
                L C++C D F +  EAK +PC+H +H DC+LPWL  H SCP+CR++LP+DE
Sbjct: 226 -----LQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLPADE 271

The following BLAST results are available for this feature:

BLAST of Sed0000661.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549060.1	6.5e-92	62.15	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953211.1	6.5e-92	62.15	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_038899359.1	4.2e-91	61.99	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]
XP_022991911.1	5.5e-91	61.73	E3 ubiquitin-protein ligase RING1-like [Cucurbita maxima]	[more]
KAG7014205.1	4.0e-89	63.02	E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0000661.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22283	6.5e-18	42.57	Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q8LPN7	3.2e-17	36.92	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9SPL2	2.7e-16	42.05	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]
Q94AK4	4.6e-16	41.58	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
P0CH30	6.1e-16	36.76	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]

BLAST of Sed0000661.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GMD4	3.2e-92	62.15	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111455823...	[more]
A0A6J1JS41	2.7e-91	61.73	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111488408 P...	[more]
A0A5D3CET0	9.5e-89	60.37	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KBK3	2.8e-88	59.75	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G429620 PE...	[more]
A0A1S3CE92	8.1e-88	60.06	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103499880 PE=4 ...	[more]

BLAST of Sed0000661.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60080.1	3.0e-42	39.25	RING/U-box superfamily protein	[more]
AT2G39720.1	4.6e-19	42.57	RING-H2 finger C2A	[more]
AT2G44330.1	6.0e-19	56.52	RING/U-box superfamily protein	[more]
AT3G19950.1	2.3e-18	36.92	RING/U-box superfamily protein	[more]
AT1G55530.1	3.3e-17	39.66	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 137..177 e-value: 4.1E-6 score: 36.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 137..178 e-value: 2.3E-10 score: 40.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 137..178 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 108..184 e-value: 1.0E-17 score: 65.5
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon	PFAM	PF14369	zinc_ribbon_9	coord: 25..58 e-value: 3.5E-10 score: 40.0
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 18..231
None	No IPR available	PANTHER	PTHR15710:SF89	FINGER PROTEIN, PUTATIVE-RELATED	coord: 18..231
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 121..183

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000661	Sed0000661	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000661.2-five_prime_utr	Sed0000661.2-five_prime_utr-LG09:38152411..38152669	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000661.2-exon	Sed0000661.2-exon-LG09:38152411..38153537	exon
Sed0000661.2-exon	Sed0000661.2-exon-LG09:38154184..38154879	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000661.2-cds	Sed0000661.2-cds-LG09:38152670..38153506	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000661.2-three_prime_utr	Sed0000661.2-three_prime_utr-LG09:38153507..38153537	three_prime_UTR
Sed0000661.2-three_prime_utr	Sed0000661.2-three_prime_utr-LG09:38154184..38154879	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000661.2	Sed0000661.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044267	cellular protein metabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity