Pay0022168.1 (mRNA) Melon (Payzawat) v1

Overview
NamePay0022168.1
TypemRNA
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr11: 21745226 .. 21746104 (-)
Sequence length786
RNA-Seq ExpressionPay0022168.1
SyntenyPay0022168.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATCATGGACCTTATCCATAAGGCTGGTTTGGAAAAAACTATCTCGAATGTTAGTCCTTTTTATCCTCAGTTAATTAGAGAATTTATCGTCAATCTTCCTGATGAGTTTAATAATCCTAGTAGTGTTGATTATCAGATAGTTCATATTAGAGGGTTCAAATTTGTGATTTCTCCTGCTGTGATAAATGGTTTTCTTGGGAATATTGTTGATATTGACTACTCTCCATCATGTCCTACTACTGAGGTTCTGGCTACTATTTTATCTGGTGGGACCTTGTTCACATGGCCTGTAAATGGAATTCCTGCGGCTGCTCTCAGCGTCAAGTATGCCATCCTGCACAAGATTGGCATTGCTAATTGGTTTCCTTCCTCACATGTCTCCAGCGTATCTACTGCTTTAAGTACATTTTTGTATCAAATTTGTAATGATGAAAAAGTAGATACGGGTGCCTTCATTTACAATCAGCTGTTGAGGCATGTTGGTTCTTTTGGGGTCAAGGTTCCCATTGCTCTTCTGCGGTTGTTCTCCAGTTTGCTACTTCACTTAAATGGAGCTGTGCTTACTGCAACTGATGCTTCTAGACCTTAGCCTAAGACAATTGCTCTTAGCTACAGACTCTTTCAAGGAAGTCATGTACATCCGACTCGGGGCCTACGTATTTTTGACACTACTGACTGGGATGAGTCTGCTGAAGGCTTCTATGTGGATCGGGAGTTGGCTGCCCACATTGTTAATTCTTTAATTGCTGAATCTCGTGTACTGACCACCTCCATTACTCTGTTATCTGAACGTCGATTAGAGGTTGATGCTCTTCTTCGACATTTGAAGTCTTTGGCACCATCTACTAGTCGTCAGCAGCCCCCATTCGATTAA

mRNA sequence

ATGAGTATCATGGACCTTATCCATAAGGCTGGTTTGGAAAAAACTATCTCGAATGTTAGTCCTTTTTATCCTCAGTTAATTAGAGAATTTATCGTCAATCTTCCTGATGAGTTTAATAATCCTAGTAGTGTTGATTATCAGATAGTTCATATTAGAGGGTTCAAATTTGTGATTTCTCCTGCTGTGATAAATGGTTTTCTTGGGAATATTGTTGATATTGACTACTCTCCATCATGTCCTACTACTGAGGTTCTGGCTACTATTTTATCTGGTGGGACCTTGTTCACATGGCCTGTAAATGGAATTCCTGCGGCTGCTCTCAGCGTCAACGTATCTACTGCTTTAAGTACATTTTTGTATCAAATTTGTAATGATGAAAAAGTAGATACGGGTGCCTTCATTTACAATCAGCTGTTGAGGCATGTTGGTTCTTTTGGGGTCAAGGTTCCCATTGCTCTTCTGCGGTTGTTCTCCAGTTTGCTACTTCACTTAAATGGAGCTCCTAAGACAATTGCTCTTAGCTACAGACTCTTTCAAGGAAGTCATGTACATCCGACTCGGGGCCTACGTATTTTTGACACTACTGACTGGGATGAGTCTGCTGAAGGCTTCTATGTGGATCGGGAGTTGGCTGCCCACATTGTTAATTCTTTAATTGCTGAATCTCGTGTACTGACCACCTCCATTACTCTGTTATCTGAACGTCGATTAGAGGTTGATGCTCTTCTTCGACATTTGAAGTCTTTGGCACCATCTACTAGTCGTCAGCAGCCCCCATTCGATTAA

Coding sequence (CDS)

ATGAGTATCATGGACCTTATCCATAAGGCTGGTTTGGAAAAAACTATCTCGAATGTTAGTCCTTTTTATCCTCAGTTAATTAGAGAATTTATCGTCAATCTTCCTGATGAGTTTAATAATCCTAGTAGTGTTGATTATCAGATAGTTCATATTAGAGGGTTCAAATTTGTGATTTCTCCTGCTGTGATAAATGGTTTTCTTGGGAATATTGTTGATATTGACTACTCTCCATCATGTCCTACTACTGAGGTTCTGGCTACTATTTTATCTGGTGGGACCTTGTTCACATGGCCTGTAAATGGAATTCCTGCGGCTGCTCTCAGCGTCAACGTATCTACTGCTTTAAGTACATTTTTGTATCAAATTTGTAATGATGAAAAAGTAGATACGGGTGCCTTCATTTACAATCAGCTGTTGAGGCATGTTGGTTCTTTTGGGGTCAAGGTTCCCATTGCTCTTCTGCGGTTGTTCTCCAGTTTGCTACTTCACTTAAATGGAGCTCCTAAGACAATTGCTCTTAGCTACAGACTCTTTCAAGGAAGTCATGTACATCCGACTCGGGGCCTACGTATTTTTGACACTACTGACTGGGATGAGTCTGCTGAAGGCTTCTATGTGGATCGGGAGTTGGCTGCCCACATTGTTAATTCTTTAATTGCTGAATCTCGTGTACTGACCACCTCCATTACTCTGTTATCTGAACGTCGATTAGAGGTTGATGCTCTTCTTCGACATTTGAAGTCTTTGGCACCATCTACTAGTCGTCAGCAGCCCCCATTCGATTAA

Protein sequence

MSIMDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVINGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSVNVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSLLLHLNGAPKTIALSYRLFQGSHVHPTRGLRIFDTTDWDESAEGFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQPPFD
Homology
BLAST of Pay0022168.1 vs. ExPASy TrEMBL
Match: A0A5A7TDT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00530 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 1.0e-113
Identity = 225/297 (75.76%), Postives = 233/297 (78.45%), Query Frame = 0

Query: 1   MSIMDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISP 60
           MSIMDLIHKAGLEKTISNV PFYPQLIREFIVNLPDEFNNPSS DYQ VHIRGFKFVISP
Sbjct: 1   MSIMDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSADYQTVHIRGFKFVISP 60

Query: 61  AVINGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSV----------- 120
             INGFLGN +DID S SCP TEVLAT+LSGGTL TWP+NGIPAAALSV           
Sbjct: 61  TAINGFLGNTIDIDCSRSCPITEVLATVLSGGTLSTWPMNGIPAAALSVKYVILHKIGIA 120

Query: 121 ---------NVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSL 180
                    ++S AL  FLYQICND+KVDTGAFIYNQLLRHVGSFGVKVPIALLRLF SL
Sbjct: 121 NWFPSSHASSISVALGAFLYQICNDDKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFFSL 180

Query: 181 LLHLNGA-----------PKTIALSYRLFQGSH-------VHPTRGLRIFDTTDWDESAE 240
           LLHLNGA           PKTIALSYRLFQG H       VHPT G RIFDT DWDESAE
Sbjct: 181 LLHLNGAVLTASDTPRPEPKTIALSYRLFQGIHMPDIDPDVHPTWGPRIFDTIDWDESAE 240

Query: 241 GFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQPP 260
           GFYVDRELA  I+NSL AES  LT SITLLSERRLEVDAL+RHLKS APSTSRQ PP
Sbjct: 241 GFYVDRELATCIINSLTAESCALTNSITLLSERRLEVDALIRHLKSSAPSTSRQHPP 297

BLAST of Pay0022168.1 vs. ExPASy TrEMBL
Match: A0A5A7VJ16 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold179G00550 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.2e-112
Identity = 220/263 (83.65%), Postives = 222/263 (84.41%), Query Frame = 0

Query: 19  VSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVINGFLGNIVDIDYSPS 78
           +SPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVINGFLGNIVDIDYSPS
Sbjct: 570 MSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVINGFLGNIVDIDYSPS 629

Query: 79  CPTTEVLATILSGGTLFTWPVNGIPAAALSV--------------------NVSTALSTF 138
           CPTTEVLATILSGGTLFTWPVNGIPAAALSV                    +VSTALSTF
Sbjct: 630 CPTTEVLATILSGGTLFTWPVNGIPAAALSVKYAILHKIGIANWFPSSHVSSVSTALSTF 689

Query: 139 LYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSLLLHLNGAPKTIALSYRLF 198
           LYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALL                     RLF
Sbjct: 690 LYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALL---------------------RLF 749

Query: 199 QGSHVHPTRGLRIFDTTDWDESAEGFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLE 258
           QGSHVHPTRGLRIFDTTDWDESAEGFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLE
Sbjct: 750 QGSHVHPTRGLRIFDTTDWDESAEGFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLE 809

Query: 259 VDALLRHLKSLAPSTSRQQPPFD 262
           VDALLRHLKSLAPSTSRQQPPFD
Sbjct: 810 VDALLRHLKSLAPSTSRQQPPFD 811

BLAST of Pay0022168.1 vs. ExPASy TrEMBL
Match: A0A1S3CRT1 (uncharacterized protein LOC103504033 OS=Cucumis melo OX=3656 GN=LOC103504033 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 2.6e-112
Identity = 222/294 (75.51%), Postives = 230/294 (78.23%), Query Frame = 0

Query: 4   MDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVI 63
           MDLIHKAGLEKTISNV PFYPQLIREFIVNLPDEFNNPSS DYQ VHIRGFKFVISP  I
Sbjct: 1   MDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSADYQTVHIRGFKFVISPTAI 60

Query: 64  NGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSV-------------- 123
           NGFLGN +DID S SCP TEVLAT+LSGGTL TWP+NGIPAAALSV              
Sbjct: 61  NGFLGNTIDIDCSRSCPITEVLATVLSGGTLSTWPMNGIPAAALSVKYVILHKIGIANWF 120

Query: 124 ------NVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSLLLH 183
                 ++S AL  FLYQICND+KVDTGAFIYNQLLRHVGSFGVKVPIALLRLF SLLLH
Sbjct: 121 PSSHASSISVALGAFLYQICNDDKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFFSLLLH 180

Query: 184 LNGA-----------PKTIALSYRLFQGSH-------VHPTRGLRIFDTTDWDESAEGFY 243
           LNGA           PKTIALSYRLFQG H       VHPT G RIFDT DWDESAEGFY
Sbjct: 181 LNGAVLTASDTPRPEPKTIALSYRLFQGIHMPDIDPDVHPTWGPRIFDTIDWDESAEGFY 240

Query: 244 VDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQPP 260
           VDRELA  I+NSL AES  LT SITLLSERRLEVDAL+RHLKS APSTSRQ PP
Sbjct: 241 VDRELATCIINSLTAESCALTNSITLLSERRLEVDALIRHLKSSAPSTSRQHPP 294

BLAST of Pay0022168.1 vs. ExPASy TrEMBL
Match: A0A1S3CHW3 (uncharacterized protein LOC103501137 OS=Cucumis melo OX=3656 GN=LOC103501137 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 7.5e-112
Identity = 221/294 (75.17%), Postives = 231/294 (78.57%), Query Frame = 0

Query: 4   MDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVI 63
           M+L HKAGLEKTISNV PFYPQLIREFIVNLPD+FN+PSSV+YQ VHIRGFKFVISPAVI
Sbjct: 1   MNLTHKAGLEKTISNVGPFYPQLIREFIVNLPDDFNDPSSVNYQTVHIRGFKFVISPAVI 60

Query: 64  NGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSV-------------- 123
           N FLGN VDIDYS SCPTTEVLA +LSGGTL TWPVNGIP AALSV              
Sbjct: 61  NEFLGNTVDIDYSSSCPTTEVLANVLSGGTLSTWPVNGIPVAALSVKYAILHKIGIANWF 120

Query: 124 ------NVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSLLLH 183
                 ++S AL TFLYQICN +KVDTGAFIYNQLL HVGSF VKVPIA  RLFSSLLLH
Sbjct: 121 PSSHASSISAALDTFLYQICNSDKVDTGAFIYNQLLTHVGSFRVKVPIAFPRLFSSLLLH 180

Query: 184 LNGA-----------PKTIALSYRLFQGSH-------VHPTRGLRIFDTTDWDESAEGFY 243
           LNG            PKTIALSYRLFQGSH       VHPT G RIFDTTDWDESAEGFY
Sbjct: 181 LNGVVLTASDAPGPEPKTIALSYRLFQGSHVPDIDHDVHPTWGPRIFDTTDWDESAEGFY 240

Query: 244 VDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQPP 260
           VDRELA  I+NSL AESR LT SITLLSERRLEVDAL+RHLKS APSTSRQQPP
Sbjct: 241 VDRELATRIINSLTAESRALTNSITLLSERRLEVDALIRHLKSSAPSTSRQQPP 294

BLAST of Pay0022168.1 vs. ExPASy TrEMBL
Match: A0A5A7SZY3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001920 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.7e-109
Identity = 215/295 (72.88%), Postives = 232/295 (78.64%), Query Frame = 0

Query: 1    MSIMDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISP 60
            MSIMDLIH+AGLEKTISNV PFYPQLIREFIVNLPDEFNNPSS+ YQ++HIRGF+FVIS 
Sbjct: 1023 MSIMDLIHRAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSLGYQMIHIRGFQFVISR 1082

Query: 61   AVINGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSV----------- 120
            AVINGFLGN +DIDYS SCP TEVLA +LSGGTL TWPVNGIP AALS+           
Sbjct: 1083 AVINGFLGNTIDIDYSRSCPPTEVLAIVLSGGTLSTWPVNGIPTAALSIKYVFLHKIGIA 1142

Query: 121  ---------NVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSL 180
                     ++STAL  FLYQICND+KVDTGAFIYNQL+RHVGSFGVKVPIAL R FSSL
Sbjct: 1143 NWFPSSHAFSISTALGKFLYQICNDDKVDTGAFIYNQLVRHVGSFGVKVPIALPRFFSSL 1202

Query: 181  LLHLNGA-----------PKTIALSYRLFQGSH-------VHPTRGLRIFDTTDWDESAE 240
            LLHLNGA           PKTIA SY+LFQGSH       VH TR  RIFDTTDWDES +
Sbjct: 1203 LLHLNGAVLIAADAPGPEPKTIAFSYKLFQGSHVSDINHDVHLTRSPRIFDTTDWDESVD 1262

Query: 241  GFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQ 258
            GF VD ELAA IVNSL AESR LT SI LLSERRLEVDAL++HLKSLAPST+RQQ
Sbjct: 1263 GFSVDHELAARIVNSLTAESRALTNSINLLSERRLEVDALIQHLKSLAPSTTRQQ 1317

BLAST of Pay0022168.1 vs. NCBI nr
Match: KAA0041594.1 (uncharacterized protein E6C27_scaffold93G00610 [Cucumis melo var. makuwa] >TYK19661.1 uncharacterized protein E5676_scaffold242G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 419.5 bits (1077), Expect = 2.2e-113
Identity = 225/297 (75.76%), Postives = 233/297 (78.45%), Query Frame = 0

Query: 1   MSIMDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISP 60
           MSIMDLIHKAGLEKTISNV PFYPQLIREFIVNLPDEFNNPSS DYQ VHIRGFKFVISP
Sbjct: 1   MSIMDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSADYQTVHIRGFKFVISP 60

Query: 61  AVINGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSV----------- 120
             INGFLGN +DID S SCP TEVLAT+LSGGTL TWP+NGIPAAALSV           
Sbjct: 61  TAINGFLGNTIDIDCSRSCPITEVLATVLSGGTLSTWPMNGIPAAALSVKYVILHKIGIA 120

Query: 121 ---------NVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSL 180
                    ++S AL  FLYQICND+KVDTGAFIYNQLLRHVGSFGVKVPIALLRLF SL
Sbjct: 121 NWFPSSHASSISVALGAFLYQICNDDKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFFSL 180

Query: 181 LLHLNGA-----------PKTIALSYRLFQGSH-------VHPTRGLRIFDTTDWDESAE 240
           LLHLNGA           PKTIALSYRLFQG H       VHPT G RIFDT DWDESAE
Sbjct: 181 LLHLNGAVLTASDTPRPEPKTIALSYRLFQGIHMPDIDPDVHPTWGPRIFDTIDWDESAE 240

Query: 241 GFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQPP 260
           GFYVDRELA  I+NSL AES  LT SITLLSERRLEVDAL+RHLKS APSTSRQ PP
Sbjct: 241 GFYVDRELATCIINSLTAESCALTNSITLLSERRLEVDALIRHLKSSAPSTSRQHPP 297

BLAST of Pay0022168.1 vs. NCBI nr
Match: KAA0067344.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 416.0 bits (1068), Expect = 2.4e-112
Identity = 220/263 (83.65%), Postives = 222/263 (84.41%), Query Frame = 0

Query: 19  VSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVINGFLGNIVDIDYSPS 78
           +SPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVINGFLGNIVDIDYSPS
Sbjct: 570 MSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVINGFLGNIVDIDYSPS 629

Query: 79  CPTTEVLATILSGGTLFTWPVNGIPAAALSV--------------------NVSTALSTF 138
           CPTTEVLATILSGGTLFTWPVNGIPAAALSV                    +VSTALSTF
Sbjct: 630 CPTTEVLATILSGGTLFTWPVNGIPAAALSVKYAILHKIGIANWFPSSHVSSVSTALSTF 689

Query: 139 LYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSLLLHLNGAPKTIALSYRLF 198
           LYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALL                     RLF
Sbjct: 690 LYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALL---------------------RLF 749

Query: 199 QGSHVHPTRGLRIFDTTDWDESAEGFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLE 258
           QGSHVHPTRGLRIFDTTDWDESAEGFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLE
Sbjct: 750 QGSHVHPTRGLRIFDTTDWDESAEGFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLE 809

Query: 259 VDALLRHLKSLAPSTSRQQPPFD 262
           VDALLRHLKSLAPSTSRQQPPFD
Sbjct: 810 VDALLRHLKSLAPSTSRQQPPFD 811

BLAST of Pay0022168.1 vs. NCBI nr
Match: XP_008466681.1 (PREDICTED: uncharacterized protein LOC103504033 [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 5.3e-112
Identity = 222/294 (75.51%), Postives = 230/294 (78.23%), Query Frame = 0

Query: 4   MDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVI 63
           MDLIHKAGLEKTISNV PFYPQLIREFIVNLPDEFNNPSS DYQ VHIRGFKFVISP  I
Sbjct: 1   MDLIHKAGLEKTISNVGPFYPQLIREFIVNLPDEFNNPSSADYQTVHIRGFKFVISPTAI 60

Query: 64  NGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSV-------------- 123
           NGFLGN +DID S SCP TEVLAT+LSGGTL TWP+NGIPAAALSV              
Sbjct: 61  NGFLGNTIDIDCSRSCPITEVLATVLSGGTLSTWPMNGIPAAALSVKYVILHKIGIANWF 120

Query: 124 ------NVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSLLLH 183
                 ++S AL  FLYQICND+KVDTGAFIYNQLLRHVGSFGVKVPIALLRLF SLLLH
Sbjct: 121 PSSHASSISVALGAFLYQICNDDKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFFSLLLH 180

Query: 184 LNGA-----------PKTIALSYRLFQGSH-------VHPTRGLRIFDTTDWDESAEGFY 243
           LNGA           PKTIALSYRLFQG H       VHPT G RIFDT DWDESAEGFY
Sbjct: 181 LNGAVLTASDTPRPEPKTIALSYRLFQGIHMPDIDPDVHPTWGPRIFDTIDWDESAEGFY 240

Query: 244 VDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQPP 260
           VDRELA  I+NSL AES  LT SITLLSERRLEVDAL+RHLKS APSTSRQ PP
Sbjct: 241 VDRELATCIINSLTAESCALTNSITLLSERRLEVDALIRHLKSSAPSTSRQHPP 294

BLAST of Pay0022168.1 vs. NCBI nr
Match: XP_008462856.1 (PREDICTED: uncharacterized protein LOC103501137 [Cucumis melo])

HSP 1 Score: 413.3 bits (1061), Expect = 1.6e-111
Identity = 221/294 (75.17%), Postives = 231/294 (78.57%), Query Frame = 0

Query: 4   MDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISPAVI 63
           M+L HKAGLEKTISNV PFYPQLIREFIVNLPD+FN+PSSV+YQ VHIRGFKFVISPAVI
Sbjct: 1   MNLTHKAGLEKTISNVGPFYPQLIREFIVNLPDDFNDPSSVNYQTVHIRGFKFVISPAVI 60

Query: 64  NGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSV-------------- 123
           N FLGN VDIDYS SCPTTEVLA +LSGGTL TWPVNGIP AALSV              
Sbjct: 61  NEFLGNTVDIDYSSSCPTTEVLANVLSGGTLSTWPVNGIPVAALSVKYAILHKIGIANWF 120

Query: 124 ------NVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSLLLH 183
                 ++S AL TFLYQICN +KVDTGAFIYNQLL HVGSF VKVPIA  RLFSSLLLH
Sbjct: 121 PSSHASSISAALDTFLYQICNSDKVDTGAFIYNQLLTHVGSFRVKVPIAFPRLFSSLLLH 180

Query: 184 LNGA-----------PKTIALSYRLFQGSH-------VHPTRGLRIFDTTDWDESAEGFY 243
           LNG            PKTIALSYRLFQGSH       VHPT G RIFDTTDWDESAEGFY
Sbjct: 181 LNGVVLTASDAPGPEPKTIALSYRLFQGSHVPDIDHDVHPTWGPRIFDTTDWDESAEGFY 240

Query: 244 VDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQPP 260
           VDRELA  I+NSL AESR LT SITLLSERRLEVDAL+RHLKS APSTSRQQPP
Sbjct: 241 VDRELATRIINSLTAESRALTNSITLLSERRLEVDALIRHLKSSAPSTSRQQPP 294

BLAST of Pay0022168.1 vs. NCBI nr
Match: TYK29236.1 (uncharacterized protein E5676_scaffold1228G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 404.8 bits (1039), Expect = 5.5e-109
Identity = 218/296 (73.65%), Postives = 231/296 (78.04%), Query Frame = 0

Query: 1   MSIMDLIHKAGLEKTISNVSPFYPQLIREFIVNLPDEFNNPSSVDYQIVHIRGFKFVISP 60
           MSIM+LIHKAGL+KTISNV PFYPQLIREFIVNLPDEFN+PSS DY  VHIRGFKFVISP
Sbjct: 1   MSIMNLIHKAGLKKTISNVGPFYPQLIREFIVNLPDEFNDPSSADYHTVHIRGFKFVISP 60

Query: 61  AVINGFLGNIVDIDYSPSCPTTEVLATILSGGTLFTWPVNGIPAAALSV----------- 120
           AVINGFLGN VDID SPSCPTT+VLA +L GGTL TW VNGIP AALSV           
Sbjct: 61  AVINGFLGNTVDIDCSPSCPTTKVLANVLFGGTLSTWLVNGIPTAALSVKYAILHKIGIA 120

Query: 121 ---------NVSTALSTFLYQICNDEKVDTGAFIYNQLLRHVGSFGVKVPIALLRLFSSL 180
                    ++S AL TFLYQICN +KVDTGAFIYNQLLRHVGSFGVKVPIA  RLFSSL
Sbjct: 121 NWFPSLHASSISVALGTFLYQICNSDKVDTGAFIYNQLLRHVGSFGVKVPIAFSRLFSSL 180

Query: 181 LLHLNGA-----------PKTIALSYRLFQGSH-------VHPTRGLRIFDTTDWDESAE 240
           LL+LNGA           PKTIALSYRLFQGSH       VHPTRG  IF+TTDWD+ AE
Sbjct: 181 LLYLNGAVLTASDAPGPEPKTIALSYRLFQGSHMPDIDHDVHPTRGPCIFETTDWDDFAE 240

Query: 241 GFYVDRELAAHIVNSLIAESRVLTTSITLLSERRLEVDALLRHLKSLAPSTSRQQP 259
           GFYVDRELA  I+NSL AES  LT SITLLSERRLEVDAL+RHLKS A STSRQQP
Sbjct: 241 GFYVDRELATRIINSLTAESHALTNSITLLSERRLEVDALIRHLKSSALSTSRQQP 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TDT91.0e-11375.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VJ161.2e-11283.65Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A1S3CRT12.6e-11275.51uncharacterized protein LOC103504033 OS=Cucumis melo OX=3656 GN=LOC103504033 PE=... [more]
A0A1S3CHW37.5e-11275.17uncharacterized protein LOC103501137 OS=Cucumis melo OX=3656 GN=LOC103501137 PE=... [more]
A0A5A7SZY32.7e-10972.88Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v... [more]
Match NameE-valueIdentityDescription
KAA0041594.12.2e-11375.76uncharacterized protein E6C27_scaffold93G00610 [Cucumis melo var. makuwa] >TYK19... [more]
KAA0067344.12.4e-11283.65putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
XP_008466681.15.3e-11275.51PREDICTED: uncharacterized protein LOC103504033 [Cucumis melo][more]
XP_008462856.11.6e-11175.17PREDICTED: uncharacterized protein LOC103501137 [Cucumis melo][more]
TYK29236.15.5e-10973.65uncharacterized protein E5676_scaffold1228G00270 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Pay0022168Pay0022168gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0022168.1-cdsPay0022168.1-cds-chr11:21745226..21745510CDS
Pay0022168.1-cdsPay0022168.1-cds-chr11:21745544..21745715CDS
Pay0022168.1-cdsPay0022168.1-cds-chr11:21745776..21746104CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0022168.1-exonPay0022168.1-exon-chr11:21745226..21745510exon
Pay0022168.1-exonPay0022168.1-exon-chr11:21745544..21745715exon
Pay0022168.1-exonPay0022168.1-exon-chr11:21745776..21746104exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Pay0022168.1Pay0022168.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane