Pay0017262.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0017262.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Integrase
Location	chr09: 897184 .. 898560 (-)
Sequence length	777
RNA-Seq Expression	Pay0017262.1
Synteny	Pay0017262.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGACGTAATTAGAAATTGCATTCCCCTTTCAACAATTGCATTCTTAGGTAGAAATATAAATTATTTGACCGGGAGTTGGCAACAAATTTTCGCCGATCAAACTGGTGCTACTACGCCTATGTGCATTCTTCATCTTTAGCAGTACCGTGAGGCTCAATGCATTGCATGGAAAGGAAAGCTGCCCGGAAAATGTGCTGATCGCAGCTCCTAGCAGCGCTGTTATGCCATGCTCTCAGTGGAAAACCATATTTTTAGCTGTTCCTGATGCATTTGAGCTCCGTTTTAACTCCATTTCGATTATGACACCCAACTCTGTTGAAATTAAATTAATCTAAACTTAATACATGAATTTGCATTATTAAATATGCATGAATAGTTTAGATACATGCAATAGTTGTTCATCACTAAATACATTGATATATGAAGAGTCACATGTATTGATATTTATTGTTAATGATTTTTAATATTCTTTTCTACTAGTATAAATATATGTAAGGTTTCTCATTTGTAAATAAGAAAGAAAGTAAGAAGTTCAACTTTAAGAAATATTATTCAAGTTCTTTCTTCTCAATTGTGTGAATAAGAGAACAATCTTCTTATCTTGTTTCTTGATTTGTAATGTGAGGGTCTATTACGTTTCTAACCAGTGGTATCAGAGCTTCAGTTAGATATGACTTCAAATGGTAACATGTTGCAATCCCAACTTCCAAAGTTCAGTGGGAAGAATTTTAATCAATGGAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGATATTGTTGAAAGAGGATACATTAAAGTTGAGAATCAGAGTGAGCTCACAAATCAACAACTTGTTGAGTTAAGAGAAAATCGTAAGAAAGACGAAAAGGCTTTATTCTTTATTTATCAAGTTGTTGATGAATTTATTTTCGAGAGAATTTCAACAGCTACTTCTGCAAAGGCGGCTTGGGATATTCTACGATCTACCTATCAAGGAGAAGATAAGATAAAGATGATAAGGTTACAAGCTCTCAGATCCGAATTTGATTGCATTAAAATGAAAGAAACTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATTGTTAATAGTTTAAGATCAAATGGTGAAGAAGTAGGTGATCAAAGAGTTGTTGAAAAGATTCTTAGAAGTATGCCAAGAAAATTTGAGCATAACGTCGTTGCAATTGAAGAATCGAAAGACTTATCTACGTTGTCTATAAATAGTTTGATGGGTTCTCTTCAATCCGATGAGCTAAGATTAAAACAATTTGATGTTAACCCCGAGGAAGCTTTTCAAATGCAAACTTCATTTAGAGGCGGTTCACGTGGAAGACGTGGTGGTCATGGAAGATGA

mRNA sequence

ATGAGCGACGTAATTAGAAATTGCATTCCCCTTTCAACAATTGCATTCTTAGTGGTATCAGAGCTTCAGTTAGATATGACTTCAAATGGTAACATGTTGCAATCCCAACTTCCAAAGTTCAGTGGGAAGAATTTTAATCAATGGAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGATATTGTTGAAAGAGGATACATTAAAGTTGAGAATCAGAGTGAGCTCACAAATCAACAACTTGTTGAGTTAAGAGAAAATCGTAAGAAAGACGAAAAGGCTTTATTCTTTATTTATCAAGTTGTTGATGAATTTATTTTCGAGAGAATTTCAACAGCTACTTCTGCAAAGGCGGCTTGGGATATTCTACGATCTACCTATCAAGGAGAAGATAAGATAAAGATGATAAGGTTACAAGCTCTCAGATCCGAATTTGATTGCATTAAAATGAAAGAAACTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATTGTTAATAGTTTAAGATCAAATGGTGAAGAAGTAGGTGATCAAAGAGTTGTTGAAAAGATTCTTAGAAGTATGCCAAGAAAATTTGAGCATAACGTCGTTGCAATTGAAGAATCGAAAGACTTATCTACGTTGTCTATAAATAGTTTGATGGGTTCTCTTCAATCCGATGAGCTAAGATTAAAACAATTTGATGTTAACCCCGAGGAAGCTTTTCAAATGCAAACTTCATTTAGAGGCGGTTCACGTGGAAGACGTGGTGGTCATGGAAGATGA

Coding sequence (CDS)

ATGAGCGACGTAATTAGAAATTGCATTCCCCTTTCAACAATTGCATTCTTAGTGGTATCAGAGCTTCAGTTAGATATGACTTCAAATGGTAACATGTTGCAATCCCAACTTCCAAAGTTCAGTGGGAAGAATTTTAATCAATGGAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGATATTGTTGAAAGAGGATACATTAAAGTTGAGAATCAGAGTGAGCTCACAAATCAACAACTTGTTGAGTTAAGAGAAAATCGTAAGAAAGACGAAAAGGCTTTATTCTTTATTTATCAAGTTGTTGATGAATTTATTTTCGAGAGAATTTCAACAGCTACTTCTGCAAAGGCGGCTTGGGATATTCTACGATCTACCTATCAAGGAGAAGATAAGATAAAGATGATAAGGTTACAAGCTCTCAGATCCGAATTTGATTGCATTAAAATGAAAGAAACTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATTGTTAATAGTTTAAGATCAAATGGTGAAGAAGTAGGTGATCAAAGAGTTGTTGAAAAGATTCTTAGAAGTATGCCAAGAAAATTTGAGCATAACGTCGTTGCAATTGAAGAATCGAAAGACTTATCTACGTTGTCTATAAATAGTTTGATGGGTTCTCTTCAATCCGATGAGCTAAGATTAAAACAATTTGATGTTAACCCCGAGGAAGCTTTTCAAATGCAAACTTCATTTAGAGGCGGTTCACGTGGAAGACGTGGTGGTCATGGAAGATGA

Protein sequence

MSDVIRNCIPLSTIAFLVVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR

Homology

[Close]

BLAST of Pay0017262.1 vs. ExPASy TrEMBL
Match: A0A1S3CAX3 (uncharacterized protein LOC103498760 OS=Cucumis melo OX=3656 GN=LOC103498760 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 9.4e-123
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 26  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVE 85
           MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVE
Sbjct: 1   MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVE 60

Query: 86  LRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRS 145
           LRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRS
Sbjct: 61  LRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRS 120

Query: 146 EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEE 205
           EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEE
Sbjct: 121 EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEE 180

Query: 206 SKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 259
           SKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Sbjct: 181 SKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 233

[Close]

BLAST of Pay0017262.1 vs. ExPASy TrEMBL
Match: A0A5D3CXM6 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001540 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.7e-121
Identity = 230/241 (95.44%), Postives = 235/241 (97.51%), Query Frame = 0


Query: 18  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSE 77
           VVSEL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSE
Sbjct: 458 VVSELRLDMASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSE 517

Query: 78  LTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKM 137
           LTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDILRSTYQGEDK+KM
Sbjct: 518 LTNQQLVELRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 577

Query: 138 IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE 197
           IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE
Sbjct: 578 IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE 637

Query: 198 HNVVAIEESKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHG 257
           H VVAIEESKDLSTLSINSLMGSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHG
Sbjct: 638 HIVVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHG 697

Query: 258 R 259
           R
Sbjct: 698 R 698

[Close]

BLAST of Pay0017262.1 vs. ExPASy TrEMBL
Match: A0A5A7U6S3 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001490 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.3e-120
Identity = 227/240 (94.58%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 19  VSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSEL 78
           ++EL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSEL
Sbjct: 34  IAELRLDMASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSEL 93

Query: 79  TNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMI 138
           TNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDILRSTYQGEDK+KMI
Sbjct: 94  TNQQLVELRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKMI 153

Query: 139 RLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH 198
           RLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH
Sbjct: 154 RLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH 213

Query: 199 NVVAIEESKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 258
            VVAIEESKDLSTLSINSLMGSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Sbjct: 214 IVVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 273

[Close]

BLAST of Pay0017262.1 vs. ExPASy TrEMBL
Match: A0A5A7V047 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005920 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.3e-120
Identity = 229/241 (95.02%), Postives = 234/241 (97.10%), Query Frame = 0


Query: 18  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSE 77
           VVSEL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSE
Sbjct: 49  VVSELKLDMASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSE 108

Query: 78  LTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKM 137
           LTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDILRSTYQGEDK+KM
Sbjct: 109 LTNQQLVELRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 168

Query: 138 IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE 197
           IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE
Sbjct: 169 IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE 228

Query: 198 HNVVAIEESKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHG 257
           H VVAIEESKDLSTLSINSLMGSLQS ELRLKQFD NPEEAFQMQTSFRGGSRGRRGGHG
Sbjct: 229 HIVVAIEESKDLSTLSINSLMGSLQSHELRLKQFDDNPEEAFQMQTSFRGGSRGRRGGHG 288

Query: 258 R 259
           R
Sbjct: 289 R 289

[Close]

BLAST of Pay0017262.1 vs. ExPASy TrEMBL
Match: A0A5A7UZJ8 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001310 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.9e-118
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 26  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVE 85
           MTSNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVE
Sbjct: 1   MTSNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 86  LRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRS 145
           LRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDILRSTYQGEDK+KMIRLQALRS
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKMIRLQALRS 120

Query: 146 EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEE 205
           EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEE
Sbjct: 121 EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHIVVAIEE 180

Query: 206 SKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 259
           SKDLSTLSINSLMGSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Sbjct: 181 SKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 233

[Close]

BLAST of Pay0017262.1 vs. NCBI nr
Match: XP_008459718.1 (PREDICTED: uncharacterized protein LOC103498760 [Cucumis melo])

HSP 1 Score: 449.5 bits (1155), Expect = 1.9e-122
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 26  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVE 85
           MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVE
Sbjct: 1   MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVE 60

Query: 86  LRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRS 145
           LRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRS
Sbjct: 61  LRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRS 120

Query: 146 EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEE 205
           EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEE
Sbjct: 121 EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEE 180

Query: 206 SKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 259
           SKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Sbjct: 181 SKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 233

[Close]

BLAST of Pay0017262.1 vs. NCBI nr
Match: TYK16225.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 443.4 bits (1139), Expect = 1.4e-120
Identity = 230/241 (95.44%), Postives = 235/241 (97.51%), Query Frame = 0


Query: 18  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSE 77
           VVSEL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSE
Sbjct: 458 VVSELRLDMASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSE 517

Query: 78  LTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKM 137
           LTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDILRSTYQGEDK+KM
Sbjct: 518 LTNQQLVELRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 577

Query: 138 IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE 197
           IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE
Sbjct: 578 IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE 637

Query: 198 HNVVAIEESKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHG 257
           H VVAIEESKDLSTLSINSLMGSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHG
Sbjct: 638 HIVVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHG 697

Query: 258 R 259
           R
Sbjct: 698 R 698

[Close]

BLAST of Pay0017262.1 vs. NCBI nr
Match: KAA0051603.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 440.7 bits (1132), Expect = 9.0e-120
Identity = 227/240 (94.58%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 19  VSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSEL 78
           ++EL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSEL
Sbjct: 34  IAELRLDMASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSEL 93

Query: 79  TNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMI 138
           TNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDILRSTYQGEDK+KMI
Sbjct: 94  TNQQLVELRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKMI 153

Query: 139 RLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH 198
           RLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH
Sbjct: 154 RLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH 213

Query: 199 NVVAIEESKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 258
            VVAIEESKDLSTLSINSLMGSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Sbjct: 214 IVVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 273

[Close]

BLAST of Pay0017262.1 vs. NCBI nr
Match: KAA0060690.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 440.7 bits (1132), Expect = 9.0e-120
Identity = 229/241 (95.02%), Postives = 234/241 (97.10%), Query Frame = 0


Query: 18  VVSELQLDMTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSE 77
           VVSEL+LDM SNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSE
Sbjct: 49  VVSELKLDMASNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSE 108

Query: 78  LTNQQLVELRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKM 137
           LTNQQLVELRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDILRSTYQGEDK+KM
Sbjct: 109 LTNQQLVELRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKM 168

Query: 138 IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE 197
           IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE
Sbjct: 169 IRLQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFE 228

Query: 198 HNVVAIEESKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHG 257
           H VVAIEESKDLSTLSINSLMGSLQS ELRLKQFD NPEEAFQMQTSFRGGSRGRRGGHG
Sbjct: 229 HIVVAIEESKDLSTLSINSLMGSLQSHELRLKQFDDNPEEAFQMQTSFRGGSRGRRGGHG 288

Query: 258 R 259
           R
Sbjct: 289 R 289

[Close]

BLAST of Pay0017262.1 vs. NCBI nr
Match: KAA0058949.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 433.3 bits (1113), Expect = 1.4e-117
Identity = 224/233 (96.14%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 26  MTSNGNMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVE 85
           MTSNGNMLQ QLP+FSGKNFNQWSIQMKVLYGSQELWDIVERGY +VENQSELTNQQLVE
Sbjct: 1   MTSNGNMLQPQLPRFSGKNFNQWSIQMKVLYGSQELWDIVERGYTEVENQSELTNQQLVE 60

Query: 86  LRENRKKDEKALFFIYQVVDEFIFERISTATSAKAAWDILRSTYQGEDKIKMIRLQALRS 145
           LRENRKKD+KALFFIYQ VDEFIFERISTATSAKAAWDILRSTYQGEDK+KMIRLQALRS
Sbjct: 61  LRENRKKDKKALFFIYQAVDEFIFERISTATSAKAAWDILRSTYQGEDKVKMIRLQALRS 120

Query: 146 EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEE 205
           EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEH VVAIEE
Sbjct: 121 EFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHIVVAIEE 180

Query: 206 SKDLSTLSINSLMGSLQSDELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 259
           SKDLSTLSINSLMGSLQS ELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR
Sbjct: 181 SKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGR 233

[Close]

BLAST of Pay0017262.1 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-16
Identity = 39/89 (43.82%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 31  NMLQSQLPKFSGKNFNQWSIQMKVLYGSQELWDIVERGYIKVENQSELTNQQLVELRENR 90
           N +  Q+P  +  N++ WS++MK + G+ ++W+IVE+G+I+ EN+  L+  Q   LR++R
Sbjct: 4   NNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSR 63

Query: 91  KKDEKALFFIYQVVDEFIFERISTATSAK 120
           K+D+KAL  IYQ +DE  FE++  ATSAK
Sbjct: 64  KRDKKALCLIYQGLDEDTFEKVVEATSAK 92

[Close]

BLAST of Pay0017262.1 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-07
Identity = 40/182 (21.98%), Postives = 86/182 (47.25%), Query Frame = 0


Query: 44  NFNQWSIQMKVLYGSQELWDIVERGYIK-----VENQSELTNQQLVELRENRKKDEKALF 103
           ++  W+   K     Q LWD+V  G  +      E  + +  ++L + R+   KD KAL 
Sbjct: 16  DYEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQ 75

Query: 104 FIYQVVDEFIFERISTATSAKAAWDILRSTYQGED--KIKMIRLQALRSEFDCIKMKETE 163
            +   + + +F +  +A+SAK  WD+LR   +     +++ + ++ L  + + +KM + E
Sbjct: 76  ILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKE 135

Query: 164 TIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHNVVAIEESKDLSTLSINS 219
           +   + ++ L I+  L     E  D  + + +  ++   F+     +EE  D+  ++  S
Sbjct: 136 SGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKS 195

The following BLAST results are available for this feature:

BLAST of Pay0017262.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0017262.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAX3	9.4e-123	100.00	uncharacterized protein LOC103498760 OS=Cucumis melo OX=3656 GN=LOC103498760 PE=...	[more]
A0A5D3CXM6	6.7e-121	95.44	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001540 PE=...	[more]
A0A5A7U6S3	4.3e-120	94.58	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001490 PE=...	[more]
A0A5A7V047	4.3e-120	95.02	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005920 PE=4...	[more]
A0A5A7UZJ8	6.9e-118	96.14	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001310 PE=4...	[more]

BLAST of Pay0017262.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459718.1	1.9e-122	100.00	PREDICTED: uncharacterized protein LOC103498760 [Cucumis melo]	[more]
TYK16225.1	1.4e-120	95.44	integrase [Cucumis melo var. makuwa]	[more]
KAA0051603.1	9.0e-120	94.58	integrase [Cucumis melo var. makuwa]	[more]
KAA0060690.1	9.0e-120	95.02	integrase [Cucumis melo var. makuwa]	[more]
KAA0058949.1	1.4e-117	96.14	integrase [Cucumis melo var. makuwa]	[more]

BLAST of Pay0017262.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	2.0e-16	43.82	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]
AT3G21000.1	2.9e-07	21.98	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 69..89
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 90..229 e-value: 1.1E-26 score: 93.2
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 51..257
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 51..257

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0017262	Pay0017262	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0017262.1-exon	Pay0017262.1-exon-chr09:897184..897908	exon
Pay0017262.1-exon	Pay0017262.1-exon-chr09:898509..898560	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0017262.1-cds	Pay0017262.1-cds-chr09:897184..897908	CDS
Pay0017262.1-cds	Pay0017262.1-cds-chr09:898509..898560	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0017262.1	Pay0017262.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006397	mRNA processing
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0008270	zinc ion binding