Pay0016716.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0016716.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	thioredoxin-like protein HCF164, chloroplastic isoform X1
Location	chr12: 15626217 .. 15627566 (-)
Sequence length	1204
RNA-Seq Expression	Pay0016716.1
Synteny	Pay0016716.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAATTTACTTTCTTGTTTGATCTCCGCAAATTCCATCTCTCTCCACCGAATTCCTCTCTGTTTTTGCATCCCTCACCCTCTCCTTCAACCCTCTGCCGCCCAATTTCCAGCTTCTCGCTGCCGATCTCCTTCCTTAGTCTACCAAATGCTTCCCGAATCGCACGACACCATCTTTGCTCCGGTATGCTTCAATCTCTTCTCTTCTTTTCTTTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTGTTTAATTTCCTTCGATTATTGAGTCAACCAAATTAGCTCTAATTTCCTGAAATCGAAACCAATTCAATTTTACTCTCGCTTTCAGGAAAAATCATCGGACGGTCCTGAATCAGCCGATGACACCATTGGCCAAGCCGCTAGTTCTTCAAGTAATCAAGGTTTTCTTCAGTTTCCCAATAAAGATATCATTAGACGAATTGCAATCATTTCTACTGTTTCGGAACTGGCACTTTTCTCCTCAAGTTGATTGGATTTTGGTGTTTCTTTGAATGACTTAGTTGCTGCGGCTTTGCCTTATGAAGAGGTTTGGAAATTTGGAATCTAATAGTTCTAGCAATCTCTTTGTTTTACCTGATTATGATTTCAAATTCAAGTAATTATAGCTGATGATGAAAATTCATATGATGATTCAGGCTCTTTCAAATTGAAAGCTCACTATGTGGAGTTCTATGCAGATTGGTGTGAAGTTTGTATGGAATTGGCTCCAGATGCATACAAAGTTGAGCAACAGTTTGTGGAAATGTTTGTTCACAAGAATCTTTTATTGTTTGAACTCGAGGAAGGTAAATAAATCTTTGTTCTTCCAGGGACCATGTGAATTTTGTAATGCTTAATGTTGATAATACAAAGTGGGAGCAGGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACATTTTGCTTTTTTATTTAGGTAATAAAAAATCACGGCCCTACAACTTTTTATTTTATATTTGAATAGTTGGATCCTTGAATTTTTTTTGAGTTTTTAGTTTTTTAGGGACTTGGACTACTTCTTTCCTCACAAAGGATTGTAGAACATTTAATTGAATTCTAGTATTGAGCTACGTTTCCTTTATCCTTATTTTTCCTTTTTTTTTTTTTATAACTTTATATAGAGTATAATATATTGTTATCATACAAAACACTGTAATATCTTCCTTTTCTCCTTTGGTTTGAGTTGTAAGTGTATTTGAGGTAAATTGAGACTTATAATCGTTCCTCAATTGGTTATCAAATTTAGTTAAAGTGATATTGTTAGTTTTTATATTTATAATGTAATAATAATGTTTTGTTTTATTCATTTGTTAATAGGGCAAAGAAACA

mRNA sequence

GTCAAATTTACTTTCTTGTTTGATCTCCGCAAATTCCATCTCTCTCCACCGAATTCCTCTCTGTTTTTGCATCCCTCACCCTCTCCTTCAACCCTCTGCCGCCCAATTTCCAGCTTCTCGCTGCCGATCTCCTTCCTTAGTCTACCAAATGCTTCCCGAATCGCACGACACCATCTTTGCTCCGGAAAAATCATCGGACGGTCCTGAATCAGCCGATGACACCATTGGCCAAGCCGCTAGTTCTTCAAGTAATCAAGGTTTTCTTCAGTTTCCCAATAAAGATATCATTAGACGAATTGCAATCATTTCTACTGTTTCGGAACTGGCACTTTTCTCCTCAAGTTGATTGGATTTTGGTGTTTCTTTGAATGACTTAGTTGCTGCGGCTTTGCCTTATGAAGAGGTTTGGAAATTTGGAATCTAATAGTTCTAGCAATCTCTTTGTTTTACCTGATTATGATTTCAAATTCAAGTAATTATAGCTGATGATGAAAATTCATATGATGATTCAGGCTCTTTCAAATTGAAAGCTCACTATGTGGAGTTCTATGCAGATTGGTGTGAAGTTTGTATGGAATTGGCTCCAGATGCATACAAAGTTGAGCAACAGTTTGTGGAAATGTTTGTTCACAAGAATCTTTTATTGTTTGAACTCGAGGAAGGTAAATAAATCTTTGTTCTTCCAGGGACCATGTGAATTTTGTAATGCTTAATGTTGATAATACAAAGTGGGAGCAGGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACATTTTGCTTTTTTATTTAGGTAATAAAAAATCACGGCCCTACAACTTTTTATTTTATATTTGAATAGTTGGATCCTTGAATTTTTTTTGAGTTTTTAGTTTTTTAGGGACTTGGACTACTTCTTTCCTCACAAAGGATTGTAGAACATTTAATTGAATTCTAGTATTGAGCTACGTTTCCTTTATCCTTATTTTTCCTTTTTTTTTTTTTATAACTTTATATAGAGTATAATATATTGTTATCATACAAAACACTGTAATATCTTCCTTTTCTCCTTTGGTTTGAGTTGTAAGTGTATTTGAGGTAAATTGAGACTTATAATCGTTCCTCAATTGGTTATCAAATTTAGTTAAAGTGATATTGTTAGTTTTTATATTTATAATGTAATAATAATGTTTTGTTTTATTCATTTGTTAATAGGGCAAAGAAACA

Coding sequence (CDS)

ATGCTTCCCGAATCGCACGACACCATCTTTGCTCCGGAAAAATCATCGGACGGTCCTGAATCAGCCGATGACACCATTGGCCAAGCCGCTAGTTCTTCAAGTAATCAAGGTTTTCTTCAGTTTCCCAATAAAGATATCATTAGACGAATTGCAATCATTTCTACTGTTTCGGAACTGGCACTTTTCTCCTCAAGTTGA

Protein sequence

MLPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELALFSSS

Homology

[Close]

BLAST of Pay0016716.1 vs. ExPASy TrEMBL
Match: A0A5D3CPH8 (Thioredoxin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005290 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.4e-19
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 58  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 117

Query: 62  FSSS 66
           FSSS
Sbjct: 118 FSSS 121

[Close]

BLAST of Pay0016716.1 vs. ExPASy TrEMBL
Match: A0A1S4DU52 (thioredoxin-like protein HCF164, chloroplastic isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484729 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.4e-19
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 55  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 114

Query: 62  FSSS 66
           FSSS
Sbjct: 115 FSSS 118

[Close]

BLAST of Pay0016716.1 vs. ExPASy TrEMBL
Match: A0A1S3B0J9 (thioredoxin-like protein HCF164, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484729 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.4e-19
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 88  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 147

Query: 62  FSSS 66
           FSSS
Sbjct: 148 FSSS 151

[Close]

BLAST of Pay0016716.1 vs. ExPASy TrEMBL
Match: A0A1S4DTC4 (thioredoxin-like protein HCF164, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484729 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.4e-19
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 88  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 147

Query: 62  FSSS 66
           FSSS
Sbjct: 148 FSSS 151

[Close]

BLAST of Pay0016716.1 vs. ExPASy TrEMBL
Match: A0A1S3B047 (thioredoxin-like protein HCF164, chloroplastic isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484729 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.4e-19
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 75  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 134

Query: 62  FSSS 66
           FSSS
Sbjct: 135 FSSS 138

[Close]

BLAST of Pay0016716.1 vs. NCBI nr
Match: TYK12934.1 (thioredoxin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 58  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 117

Query: 62  FSSS 66
           FSSS
Sbjct: 118 FSSS 121

[Close]

BLAST of Pay0016716.1 vs. NCBI nr
Match: XP_016899240.1 (PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X4 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 55  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 114

Query: 62  FSSS 66
           FSSS
Sbjct: 115 FSSS 118

[Close]

BLAST of Pay0016716.1 vs. NCBI nr
Match: XP_008440187.2 (PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 75  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 134

Query: 62  FSSS 66
           FSSS
Sbjct: 135 FSSS 138

[Close]

BLAST of Pay0016716.1 vs. NCBI nr
Match: XP_016899239.1 (PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 88  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 147

Query: 62  FSSS 66
           FSSS
Sbjct: 148 FSSS 151

[Close]

BLAST of Pay0016716.1 vs. NCBI nr
Match: XP_008440188.2 (PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2   LPESHDTIFAPEKSSDGPESADDTIGQAASSSSNQGFLQFPNKDIIRRIAIISTVSELAL 61
           LPESHDT  APEKSSDGPESA DT GQAASSSSNQGF +FPNKDI RRIAIISTVS LAL
Sbjct: 88  LPESHDTSSAPEKSSDGPESAGDTTGQAASSSSNQGFPEFPNKDINRRIAIISTVSALAL 147

Query: 62  FSSS 66
           FSSS
Sbjct: 148 FSSS 151

The following BLAST results are available for this feature:

BLAST of Pay0016716.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0016716.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPH8	5.4e-19	87.50	Thioredoxin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4DU52	5.4e-19	87.50	thioredoxin-like protein HCF164, chloroplastic isoform X4 OS=Cucumis melo OX=365...	[more]
A0A1S3B0J9	5.4e-19	87.50	thioredoxin-like protein HCF164, chloroplastic isoform X2 OS=Cucumis melo OX=365...	[more]
A0A1S4DTC4	5.4e-19	87.50	thioredoxin-like protein HCF164, chloroplastic isoform X1 OS=Cucumis melo OX=365...	[more]
A0A1S3B047	5.4e-19	87.50	thioredoxin-like protein HCF164, chloroplastic isoform X3 OS=Cucumis melo OX=365...	[more]

BLAST of Pay0016716.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12934.1	1.1e-18	87.50	thioredoxin-like protein [Cucumis melo var. makuwa]	[more]
XP_016899240.1	1.1e-18	87.50	PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X4 [Cucumis me...	[more]
XP_008440187.2	1.1e-18	87.50	PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X3 [Cucumis me...	[more]
XP_016899239.1	1.1e-18	87.50	PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X1 [Cucumis me...	[more]
XP_008440188.2	1.1e-18	87.50	PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X2 [Cucumis me...	[more]

BLAST of Pay0016716.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..38

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0016716	Pay0016716	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0016716.1-exon	Pay0016716.1-exon-chr12:15626217..15627236	exon
Pay0016716.1-exon	Pay0016716.1-exon-chr12:15627383..15627566	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0016716.1-three_prime_utr	Pay0016716.1-three_prime_utr-chr12:15626217..15627074	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0016716.1-cds	Pay0016716.1-cds-chr12:15627075..15627236	CDS
Pay0016716.1-cds	Pay0016716.1-cds-chr12:15627383..15627418	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0016716.1-five_prime_utr	Pay0016716.1-five_prime_utr-chr12:15627419..15627566	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0016716.1	Pay0016716.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor