Pay0015868.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0015868.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Dynein light chain
Location	chr09: 19180622 .. 19183412 (-)
Sequence length	1066
RNA-Seq Expression	Pay0015868.1
Synteny	Pay0015868.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTGAAAAGAAAAAAAGTTGGGGTTTGGTTGGTATCTAAGCACAGATTACCAATGAAGAAATGGGAATTATTTCATTGGATTTCGTCTTTGACCGATGCCGTGGTTCAAAGACAGAATCCCACAAACACCAACCCAATAAAATTCAAAAATTTTGATTTTTGTCTCGCAATTCCAACTCTTTCTTGGCATTGTCTTCCCCTCCTTGCGCCATTGTTTCTCTTTTTCCTCCCCTTCCCCTTGTCTTCTTCTTTCTTCTGCCAGACATTTTGTCATACACGTTACGGGCATCGTGTATTATTTCCTCTGATTCTGAACTTCTGTAGAAGAAGAAGAAGAAGGTGGGGTTGTTCTTTTGTAGATTTTTTCCCCCAATTTCATGAAATTGTAGCGTTTGTGGGTCATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGTAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAGCAGCAAGAGCAGCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGGCCTTTCCTCTGCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGTCTTGCTCTTGCCCTTAAAAAGGTTAGAAGATGGAAAGAAAAAAATCTAACCTTGAACTAACTTTTGGTTCTGAAATGAATCTTCGTGGTTGCGATTTTCTATGAACTGCAGCTTCGTTGCCCAGTTTTCGTTTTGGATTTCGAGTTAGTGAAAGTGTTTTTTTGGTATGGTTATTTGACTGCTTTGAGTATTATCTGGACTGTGTTTGATGAAATGCCTCTTTTGGTTTGAACTGAACTTTTTTTTTTTTTGGGATTTCAAGTCTGGAATTTCTGGGATCTCTATAAATTTATGTAGAGAACTCATTGCAATTGTTTCTGTTTTGGGTTCTTACAAAAGTCGGTTTCTGTATCATGAAAGTACTCTGCAGTTGAAAGGGTCTCTGAATTAATTAACTAGCTCTGTAAACTGTTCATGTTTTTCCTGATTTGAGCACTTTCAAACTTTAGGATTAGCTTTTCCATTATAATCGTAAGTAGCAAATTAAATGTTCTTTATTGCTCCACGGTCCTCCCTAGACTTGTAGTTCGGTAGAGAGGGGATGACATGAAAAAAGTTGTGGACACGACAATTCCAGTGGGAATTTGCTGCCCACCATTAATGATCATAGCTTATGGCCATCCACTACTGACACTTGCCAGTTTCCTTGATTTTTCTCTGGTTCTCTAGAAAACTTGTCGGAATTAGGAGATTGGTGTCATTGTCAAATGCGTGATGTTACAACTAAACTCTAGATTTAAGAGGCTACTTTATTCTAAGTTGAAATTTTCCCTGAATTTGCCTATTGTAATCCTTCAAAGTATCAGCTTTATCTATAATGGCTGGTCCTCCTTCTCTACCCTCTCTTTCTAGCTATAAGAAAAAAGAGCTGTCTGAAAATCTGTTTCCAAAATAGGTTTTTGGTTTGAAAATTGTGATGGATTGATTGTAAAAGTTAATATTGTTGTGTATATAGTAACTATTACTTAAAATTTCAGAAGATTGAAACGAGGAAGGACCTCTATTTTGGTGATAAATAGGTTACTTGTGATAGCATACCTAAAAAAACTTTCTTTTTTTCTTTTTAAACCTCTTTTGTGTACTTGATAGGCAAGGACTATAACTGATTTTTTTTTTTTTTTTTTTTTGTGTGAAGATCCAATGCTCTCACACCATTCTTGTGGAAAACATACCATACAAAAACATAATCATTATAGTGTTCTTGACAACAAAATAATTAAGTCTGAAACCATCAAGCTGCATGTCATTGTGCTTAGGACAAAATCCAGTCGTTAAAGTTGAGACCTTATTTGCTATGTGACAAAATCCACTCTTATTAAAGCATTTTTGTTGTCCTACCTGAGAAGTGTAACAAGTTCAAAAAAGGAACTCTACGAATAACTTTATATGTTGTAGCATCAAGTGGTTGGTCGTAGTATGATAGGAGTACGTCAAAACATAATCACAATGTATTGTAATGTAAAAGGTGGAGTACTTATGAGTTAAACCAAGTAATTTGAGAAACTTTGACCCTTTTTTTGTAAAACGAGTCAGGCCCTAACCCAACTGAATTAATGTCTAACTTCTCCCATCCTCACCCTTTTAATTTATATACCCTAACAATTACTCCAACTAGTTGCTAATATACCCTTTAACAACATTCTTGTCATAGTATTAGCGGAGATACCTATACGTAATCACTTGAAAACATTCTCTAATTGAATGAAGTTAAGTTTGATGGTAGTGAGTTTGTAATGGTTTTTTCAGGAATTTGATTCCTCCTATGGTCCAGCCTGGCATTGCATCGTGGGAACTAGCTTTGGGTCCTATGTAACACATTCCCTTGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTATATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTATCTCGTGGAGCATCCTTGAAAGATTGAGTTTCTCTATTATATTCGTGGAACAGGTATCAGATTTTAAGTCATGAGCAAGAACAACCAGGTTCAGCCATATTATTCTTTTTGGTTGTATCATTGACTTTACCTTGTTAAAGTGATGTGAGTTGTCTTGTGCATTAATTTTACTAGTGGATTATGAAAATTTTGTTGTGTGCAGTCCAACCCCAGGGATTTGTGATGTTATCTTATATTTCATGCTTTGTTTTGGTTCGAGGGAGTAAATAAAAAGTTGTATGGTGA

mRNA sequence

AAAGTGAAAAGAAAAAAAGTTGGGGTTTGGTTGGTATCTAAGCACAGATTACCAATGAAGAAATGGGAATTATTTCATTGGATTTCGTCTTTGACCGATGCCGTGGTTCAAAGACAGAATCCCACAAACACCAACCCAATAAAATTCAAAAATTTTGATTTTTGTCTCGCAATTCCAACTCTTTCTTGGCATTGTCTTCCCCTCCTTGCGCCATTGTTTCTCTTTTTCCTCCCCTTCCCCTTGTCTTCTTCTTTCTTCTGCCAGACATTTTGTCATACACGTTACGGGCATCGTGTATTATTTCCTCTGATTCTGAACTTCTGTAGAAGAAGAAGAAGAAGGTGGGGTTGTTCTTTTGTAGATTTTTTCCCCCAATTTCATGAAATTGTAGCGTTTGTGGGTCATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGTAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAGCAGCAAGAGCAGCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGGCCTTTCCTCTGCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGTCTTGCTCTTGCCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCAGCCTGGCATTGCATCGTGGGAACTAGCTTTGGGTCCTATGTAACACATTCCCTTGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTATATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTATCTCGTGGAGCATCCTTGAAAGATTGAGTTTCTCTATTATATTCGTGGAACAGGTATCAGATTTTAAGTCATGAGCAAGAACAACCAGGTTCAGCCATATTATTCTTTTTGGTTGTATCATTGACTTTACCTTGTTAAAGTGATGTGAGTTGTCTTGTGCATTAATTTTACTAGTGGATTATGAAAATTTTGTTGTGTGCAGTCCAACCCCAGGGATTTGTGATGTTATCTTATATTTCATGCTTTGTTTTGGTTCGAGGGAGTAAATAAAAAGTTGTATGGTGA

Coding sequence (CDS)

ATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGTAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAGCAGCAAGAGCAGCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGGCCTTTCCTCTGCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGTCTTGCTCTTGCCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCAGCCTGGCATTGCATCGTGGGAACTAGCTTTGGGTCCTATGTAACACATTCCCTTGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTATATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTATCTCGTGGAGCATCCTTGAAAGATTGA

Protein sequence

MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGASLKD

Homology

[Close]

BLAST of Pay0015868.1 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-14
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 38  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM+  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSDDMQQDAIDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Pay0015868.1 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-14
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 38  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM+  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Pay0015868.1 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-14
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 38  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM+  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAFIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Pay0015868.1 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQALEKFNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAVLLFKS 88

[Close]

BLAST of Pay0015868.1 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 38  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM+  +Q  A  CA + ++    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Pay0015868.1 vs. ExPASy TrEMBL
Match: A0A0A0KPF8 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.0e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRGASLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Pay0015868.1 vs. ExPASy TrEMBL
Match: A0A1S3CSY6 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.0e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRGASLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Pay0015868.1 vs. ExPASy TrEMBL
Match: A0A6J1FHG9 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111445494 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Pay0015868.1 vs. ExPASy TrEMBL
Match: A0A6J1I7W2 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472109 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.3e-64
Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           M+GAEMELERRSKFLNGLILKKKAGE QE RDRLN+RVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Pay0015868.1 vs. ExPASy TrEMBL
Match: A0A6J1CWZ8 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015562 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           M+GAEMELERRSKFLNGLI KKKA EQQE+RDRLN+RVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLIQKKKAVEQQEERDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKR ALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRFALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGTSLKD 134

[Close]

BLAST of Pay0015868.1 vs. NCBI nr
Match: XP_004150121.1 (dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo] >KGN51478.1 hypothetical protein Csa_008341 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRGASLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of Pay0015868.1 vs. NCBI nr
Match: XP_038906759.1 (dynein light chain LC6, flagellar outer arm [Benincasa hispida])

HSP 1 Score: 260.4 bits (664), Expect = 8.6e-66
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           MDGAEMELERRSKFL+GLILKKKAGEQQEQRDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLSGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGTSLKD 134

[Close]

BLAST of Pay0015868.1 vs. NCBI nr
Match: XP_023551552.1 (dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           M+GAEMELERRSKFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Pay0015868.1 vs. NCBI nr
Match: XP_022939677.1 (dynein light chain LC6, flagellar outer arm [Cucurbita moschata] >KAG6579264.1 hypothetical protein SDJN03_23712, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016780.1 hypothetical protein SDJN02_21890 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.4 bits (651), Expect = 2.8e-64
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           M+GAEMELERR+KFLNGLILKKKAGE QE RDRLNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Pay0015868.1 vs. NCBI nr
Match: XP_022973572.1 (dynein light chain LC6, flagellar outer arm [Cucurbita maxima])

HSP 1 Score: 254.6 bits (649), Expect = 4.7e-64
Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           M+GAEMELERRSKFLNGLILKKKAGE QE RDRLN+RVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDSKRLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGASLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of Pay0015868.1 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-52
Identity = 99/128 (77.34%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60
           M+G E+ELERRSKFLN LI KKKA EQQ+Q+D  NVRVRASDM  P QNRAFS +RE+L+
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILN 60

Query: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           + PGK D+KRLA ALKK+FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF IDKVY+LLFK
Sbjct: 61  ATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFK 120

Query: 121 TAVEPLSR 129
           TAVEPL +
Sbjct: 121 TAVEPLDQ 128

[Close]

BLAST of Pay0015868.1 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 32  DRLNVRVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIV 91
           + L VR+ A+DM   +Q  AF CAR  LDS+  K  SK +A  LKKEFD  YGPAWHCIV
Sbjct: 113 EMLTVRILAADMPGFMQAHAFRCARMTLDSLE-KFSSKHMAFNLKKEFDKGYGPAWHCIV 172

Query: 92  GTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS 128
           G+SFGS+VTHS G F+YFS+DK+Y+LLFKT V P S
Sbjct: 173 GSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

[Close]

BLAST of Pay0015868.1 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-14
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 38  VRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGS 97
           V  SDM   +Q +A + A + LD +    D K +A  +KKEFD  YG  W C+VG++FG 
Sbjct: 8   VEDSDMPVKMQMQAMAFASQALD-LFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGC 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKTAVEP 126
           + THS G F+YF ++ +  L+FK A  P
Sbjct: 68  FFTHSKGTFIYFQLETLKFLIFKGASTP 94

[Close]

BLAST of Pay0015868.1 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-13
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 41  SDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVT 100
           +DM   ++  A S A + LD      +  ++A  +KKEFD SYG  W CIVGT FGS+VT
Sbjct: 11  TDMKQTMKEDALSLASKALDCF-DVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVT 70

Query: 101 HSLGGFLYFSIDKVYILLFKTAV 124
           H  G F++FS+  + ILLFK +V
Sbjct: 71  HCSGCFIHFSVGSLTILLFKGSV 92

[Close]

BLAST of Pay0015868.1 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-13
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 37  RVRASDMAFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFG 96
           +V  +DM   +Q +A   A + LD +    DS  +A  +KKEFD  YG  W C+VGT+FG
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLD-LFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFG 66

Query: 97  SYVTHSLGGFLYFSIDKVYILLFKTA 123
            + THS G F+YF +  +  L+FK A
Sbjct: 67  CFFTHSKGTFIYFHLGTLNFLIFKGA 91

The following BLAST results are available for this feature:

BLAST of Pay0015868.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q22799	6.1e-14	45.24	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	8.0e-14	45.24	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
O96860	8.0e-14	45.24	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
O02414	1.4e-13	44.05	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q3MHR3	1.4e-13	44.05	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]

BLAST of Pay0015868.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPF8	1.0e-67	100.00	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1	[more]
A0A1S3CSY6	1.0e-67	100.00	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1	[more]
A0A6J1FHG9	1.3e-64	95.52	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111445494 PE=3 SV=1	[more]
A0A6J1I7W2	2.3e-64	94.78	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472109 PE=3 SV=1	[more]
A0A6J1CWZ8	1.5e-63	94.03	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015562 PE=3 SV=1	[more]

BLAST of Pay0015868.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150121.1	2.1e-67	100.00	dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: d...	[more]
XP_038906759.1	8.6e-66	97.76	dynein light chain LC6, flagellar outer arm [Benincasa hispida]	[more]
XP_023551552.1	1.2e-64	96.27	dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]	[more]
XP_022939677.1	2.8e-64	95.52	dynein light chain LC6, flagellar outer arm [Cucurbita moschata] >KAG6579264.1 h...	[more]
XP_022973572.1	4.7e-64	94.78	dynein light chain LC6, flagellar outer arm [Cucurbita maxima]	[more]

BLAST of Pay0015868.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23220.1	1.2e-52	77.34	Dynein light chain type 1 family protein	[more]
AT5G20110.1	1.3e-27	61.46	Dynein light chain type 1 family protein	[more]
AT1G52240.2	8.2e-14	42.05	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G27360.1	3.1e-13	45.78	Dynein light chain type 1 family protein	[more]
AT3G16120.1	5.3e-13	41.86	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 31..121 e-value: 1.7E-38 score: 143.9
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 36..121 e-value: 4.8E-29 score: 100.6
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..127
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 24..122 e-value: 7.3E-33 score: 114.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 28..121
None	No IPR available	PANTHER	PTHR11886:SF39	DYNEIN LIGHT CHAIN	coord: 1..127

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0015868	Pay0015868	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0015868.1-three_prime_utr	Pay0015868.1-three_prime_utr-chr09:19180622..19180879	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0015868.1-exon	Pay0015868.1-exon-chr09:19180622..19181053	exon
Pay0015868.1-exon	Pay0015868.1-exon-chr09:19182779..19183412	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0015868.1-cds	Pay0015868.1-cds-chr09:19180880..19181053	CDS
Pay0015868.1-cds	Pay0015868.1-cds-chr09:19182779..19183009	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0015868.1-five_prime_utr	Pay0015868.1-five_prime_utr-chr09:19183010..19183412	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0015868.1	Pay0015868.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding