Pay0015559.1 (mRNA) Melon (Payzawat) v1

Overview
NamePay0015559.1
TypemRNA
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionUnknown protein
LocationContig00104_ERROPOS5972968: 64677 .. 65521 (-)
Sequence length768
RNA-Seq ExpressionPay0015559.1
SyntenyPay0015559.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGCGAAAGGGGAAGTGGGGTTATTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGCTGAGCGGAAGGAGGTGAAGAGTTTTAAAATAAACGAAAGTGTTGGTAGTACATCCAATGGATGGTCTAATTTGAATGAAAGTCAAAGGGGAAGAAATACGACTGTTAGTGGCGGCAAGGGTGGGCGGAATTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGTGGTGTTGGGGTGAGAAAGAAAGATACAAAACATAATAAAAAGCATGGAAAAGCGGGAATGGCGGTGGTGGGGGAGGGGGTGGGGGCAATGGTGGTGGTGGAGGTGGAGGCGGCGGCGGCGGCGGCGGCGGTGGAGGTGGAGGGGGAGGGGGAAATGGAAAAGGGTATGGATGGGGAGGGGGTAGTGGAGGTGGTGGCGGCGGTGGAGGGGGAGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAAGTGGCGGTGGCGGAGGAGGAGGAGGGGGAGGAAGTGGTGGAGGATGGGGTTTCGGGGGAGGAGGGAGTAGAGGGTTTTGTTGGATTTGGGGATGTGGCGGCGGTGGCGGTCATGGAAAAGCATTGGGTAGGAGAGAAGGTCCCTCAAACTAAAAAGTAAAAGGAAGTATGGAGATTTATCAAAGAAAGTATAAAAATCAAATTCATAATAAACATCGAGTGCTTAACATAATGTACTTCTTACATATTCAGGTTTTGCTTAACTATTAATTCCTTGAAAAATAACTAAGTAGTCATTTTGAGTTTAAGGTAAATTTGTAATTCTTGAATTTTGGATTATCACAAAAA

mRNA sequence

ATGAAGAGCGAAAGGGGAAGTGGGGTTATTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGCTGAGCGGAAGGAGGTGAAGAGTTTTAAAATAAACGAAAGTGTTGGTAGTACATCCAATGGATGGTCTAATTTGAATGAAAGTCAAAGGGGAAGAAATACGACTGTTAGTGGCGGCAAGGGTGGGCGGAATTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGGGGTGGGGGCAATGGTGGTGGTGGAGGTGGAGGCGGCGGCGGCGGCGGCGGCGGTGGAGGTGGAGGGGGAGGGGGAAATGGAAAAGGGTATGGATGGGGAGGGGGTAGTGGAGGTGGTGGCGGCGGTGGAGGGGGAGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAAGTGGCGGTGGCGGAGGAGGAGGAGGGGGAGGAAGTGGTGGAGGATGGGGTTTCGGGGGAGGAGGGAGTAGAGGGTTTTGTTGGATTTGGGGATGTGGCGGCGGTGGCGGTCATGGAAAAGCATTGGGTAGGAGAGAAGGTCCCTCAAACTAAAAAGTAAAAGGAAGTATGGAGATTTATCAAAGAAAGTATAAAAATCAAATTCATAATAAACATCGAGTGCTTAACATAATGTACTTCTTACATATTCAGGTTTTGCTTAACTATTAATTCCTTGAAAAATAACTAAGTAGTCATTTTGAGTTTAAGGTAAATTTGTAATTCTTGAATTTTGGATTATCACAAAAA

Coding sequence (CDS)

ATGAAGAGCGAAAGGGGAAGTGGGGTTATTTTGTTTCTTGGAATTGTGTTGATCAGCATTTACTTGGTTGAGGTTGAGGCTGAGCGGAAGGAGGTGAAGAGTTTTAAAATAAACGAAAGTGTTGGTAGTACATCCAATGGATGGTCTAATTTGAATGAAAGTCAAAGGGGAAGAAATACGACTGTTAGTGGCGGCAAGGGTGGGCGGAATTCATCGGGTGAGGGCCACGGAGGTGGTGGTGGAGGAGGGGGAAGGGGTGGGGGCAATGGTGGTGGTGGAGGTGGAGGCGGCGGCGGCGGCGGCGGCGGTGGAGGTGGAGGGGGAGGGGGAAATGGAAAAGGGTATGGATGGGGAGGGGGTAGTGGAGGTGGTGGCGGCGGTGGAGGGGGAGGAGGTGGTGGTGGAGGAGGAGGAGGAGGAAGTGGCGGTGGCGGAGGAGGAGGAGGGGGAGGAAGTGGTGGAGGATGGGGTTTCGGGGGAGGAGGGAGTAGAGGGTTTTGTTGGATTTGGGGATGTGGCGGCGGTGGCGGTCATGGAAAAGCATTGGGTAGGAGAGAAGGTCCCTCAAACTAA

Protein sequence

MKSERGSGVILFLGIVLISIYLVEVEAERKEVKSFKINESVGSTSNGWSNLNESQRGRNTTVSGGKGGRNSSGEGHGGGGGGGGRGGGNGGGGGGGGGGGGGGGGGGGGGNGKGYGWGGGSGGGGGGGGGGGGGGGGGGGSGGGGGGGGGGSGGGWGFGGGGSRGFCWIWGCGGGGGHGKALGRREGPSN
Homology
[Close]
BLAST of Pay0015559.1 vs. NCBI nr
Match: XP_038882243.1 (glycine-rich protein DOT1-like [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-07
Identity = 93/156 (59.62%), Postives = 103/156 (66.03%), Query Frame = 0 

Query: 1   MKSERGSGVILFLGIVLISIYLVEVEAERKEVKSFKINESVGSTSNGWSNLNES-----Q 60
           M  ERG GV+L +GIVLISIYLVEVE   KEVK+F+ +E++G+TSN WSN +ES      
Sbjct: 1   MLRERGFGVLLIIGIVLISIYLVEVEG--KEVKAFETSENLGTTSNQWSNSDESLYGVGL 60

Query: 61  RGRNTTVSGGKGGRNSSGEGHGGGGGGGGR----------------------------GG 120
            GRN TVSGGKGG NSSGEGHGGGGGGG R                            GG
Sbjct: 61  TGRNVTVSGGKGGGNSSGEGHGGGGGGGVRKKDVKHNKKHKNKQKRAGEAAEAAMAVGGG 120

Query: 121 GNGGGGGGGGGGGGGGGGGGGGGNGKGYGWGGGSGG 124
           G G GGGGGGGGG GGGGGGGGGNG+G GWG GSGG
Sbjct: 121 GGGNGGGGGGGGGSGGGGGGGGGNGRGLGWGEGSGG 154

The following BLAST results are available for this feature:
BLAST of Pay0015559.1 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0015559.1 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0015559.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882243.12.0e-0759.62glycine-rich protein DOT1-like [Benincasa hispida][more]
BLAST of Pay0015559.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..68

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Pay0015559Pay0015559gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0015559.1-exonPay0015559.1-exon-Contig00104_ERROPOS5972968:64677..65191exon
Pay0015559.1-exonPay0015559.1-exon-Contig00104_ERROPOS5972968:65269..65521exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0015559.1-three_prime_utrPay0015559.1-three_prime_utr-Contig00104_ERROPOS5972968:64677..64871three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0015559.1-cdsPay0015559.1-cds-Contig00104_ERROPOS5972968:64872..65191CDS
Pay0015559.1-cdsPay0015559.1-cds-Contig00104_ERROPOS5972968:65269..65521CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Pay0015559.1Pay0015559.1-proteinpolypeptide