Pay0012566.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0012566.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Location	chr03: 21300894 .. 21301996 (+)
Sequence length	663
RNA-Seq Expression	Pay0012566.1
Synteny	Pay0012566.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAAGGTTTCTTTCCATTTTATGTCATTTACTAAGGACGACTGCTGGATTAGTCGGAATAGAAGTTATAGATGTAGAGGAGATGGTTCCCATGTTCCTACATATATTAACTCATGACGTGAAGAACCGAATGATACAAAGGCAATTTGTACGATCTGGTGAGACTGTTTCTAGACATTTCAACTATGTCTTGTTAGCAATTTTGCGGTTACACGACGAGTTGTTGAAAAAACTTCAGCCTACAAACTCGTGCACGGATCCGAGATGGAAATGGTTTGAGGTAAATACCATTTGTCTACATGTTAGTTAGACCTACCAAACAAATTGCGTTAGATGGCTATTTCATACTTGTTGATGTTATTATATCGTAGAGTTGTCTTGGTGCGTTAGATGGCACATACATTAAGGTGAATGTCAGTGCAACCGATCGTCCAAGGTACAAGACACGTAAGGGTGAAGTTGCGACAAATGTACTTGGTGTTTGCGATACAAAAGGTGATTTCGTGTTTGTTTTATCCGGGTGGAAAGGATCGGCCGCTGATTTCAGAATTCTTAGAGATGCAATATCAAGACATAACGGACTGAAGGTTCCAAAGGGTAAATAGCTAGATGTTTTATCTCTTTATAGTCTTTATATTCATAGGGTGGGAATTCAAATAGTCGAGTTCTGAACATGGTATTATTATCTATGTGATGTTGGGTACCAAAATGCTAAGGGTTTCTTGGCCCCATATAGGGAGAAAGATATCATCTTTCAGAGTGGCATGGAGGAGGTAATGCACCAACAACAGTTCGAGAGTTCTTCAACATGAAACATTCTTCAGCACATAATGTCTCGAAAGAGCATTTGGGTTGTTGAAAGGTTGCTGGAAAATTTTAAGAGGAAAGTCATACTACCCAGTCAATGTCCAATGTCGAACAATCATGGCGTGTTATCTGCTACATAATCTTATCAATAGAGAGATGGCTAACAGTGAAATAATCGACGATTTAGATGAGGGTGATTCAACGTACGCTACAACTGAAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATTGAGTGAATGGAGGGATCAATTGGTTGTTCAGTGA

mRNA sequence

ATGGATAGAAGGTTTCTTTCCATTTTATGTCATTTACTAAGGACGACTGCTGGATTAGTCGGAATAGAAGTTATAGATGTAGAGGAGATGGTTCCCATGTTCCTACATATATTAACTCATGACGTGAAGAACCGAATGATACAAAGGCAATTTGTACGATCTGGTGAGACTGTTTCTAGACATTTCAACTATGTCTTGTTAGCAATTTTGCGGTTACACGACGAGTTGTTGAAAAAACTTCAGCCTACAAACTCGTGCACGGATCCGAGATGGAAATGGTTTGAGAGTTGTCTTGGTGCGTTAGATGGCACATACATTAAGGTGAATGTCAGTGCAACCGATCGTCCAAGGTACAAGACACGTAAGGGTGAAGTTGCGACAAATGTACTTGGTGTTTGCGATACAAAAGCATTTGGGTTGTTGAAAGGTTGCTGGAAAATTTTAAGAGGAAAGTCATACTACCCAGTCAATGTCCAATGTCGAACAATCATGGCGTGTTATCTGCTACATAATCTTATCAATAGAGAGATGGCTAACAGTGAAATAATCGACGATTTAGATGAGGGTGATTCAACGTACGCTACAACTGAAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATTGAGTGAATGGAGGGATCAATTGGTTGTTCAGTGA

Coding sequence (CDS)

ATGGATAGAAGGTTTCTTTCCATTTTATGTCATTTACTAAGGACGACTGCTGGATTAGTCGGAATAGAAGTTATAGATGTAGAGGAGATGGTTCCCATGTTCCTACATATATTAACTCATGACGTGAAGAACCGAATGATACAAAGGCAATTTGTACGATCTGGTGAGACTGTTTCTAGACATTTCAACTATGTCTTGTTAGCAATTTTGCGGTTACACGACGAGTTGTTGAAAAAACTTCAGCCTACAAACTCGTGCACGGATCCGAGATGGAAATGGTTTGAGAGTTGTCTTGGTGCGTTAGATGGCACATACATTAAGGTGAATGTCAGTGCAACCGATCGTCCAAGGTACAAGACACGTAAGGGTGAAGTTGCGACAAATGTACTTGGTGTTTGCGATACAAAAGCATTTGGGTTGTTGAAAGGTTGCTGGAAAATTTTAAGAGGAAAGTCATACTACCCAGTCAATGTCCAATGTCGAACAATCATGGCGTGTTATCTGCTACATAATCTTATCAATAGAGAGATGGCTAACAGTGAAATAATCGACGATTTAGATGAGGGTGATTCAACGTACGCTACAACTGAAGGTGACGAGATTAATTACATTGAGGCTTCAAACGAATTGAGTGAATGGAGGGATCAATTGGTTGTTCAGTGA

Protein sequence

MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSRHFNYVLLAILRLHDELLKKLQPTNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPRYKTRKGEVATNVLGVCDTKAFGLLKGCWKILRGKSYYPVNVQCRTIMACYLLHNLINREMANSEIIDDLDEGDSTYATTEGDEINYIEASNELSEWRDQLVVQ

Homology

[Close]

BLAST of Pay0012566.1 vs. ExPASy TrEMBL
Match: A0A1S3C5E3 (uncharacterized protein LOC103496660 OS=Cucumis melo OX=3656 GN=LOC103496660 PE=3 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.1e-111
Identity = 207/226 (91.59%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRRF SILCHLL TTAGLVGIEVIDVEEMV MFLHILTHDVKNRMIQRQFVRSGETVSR
Sbjct: 1   MDRRFFSILCHLLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPRYK 120
           HFN VLLA LRLHDELLKKLQP TNSCTD RWKWFE+CLGALD TYIKVNVSATDRPRYK
Sbjct: 61  HFNLVLLATLRLHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYK 120

Query: 121 TRKGEVATNVLGVCDTK-----AFGLLKGCWKILRGKSYYPVNVQCRTIMACYLLHNLIN 180
           TRKGEVATNVLGVCDTK     AFGLLKG WKILRGKSYYPVNVQCRTIMAC LLHNLIN
Sbjct: 121 TRKGEVATNVLGVCDTKECLERAFGLLKGRWKILRGKSYYPVNVQCRTIMACCLLHNLIN 180

Query: 181 REMANSEIIDDLDEGDSTYATTEGDEINYIEASNELSEWRDQLVVQ 221
           +EMANSEIIDDLDEGDSTYATTEGDEINYIEASNELS+WRDQL VQ
Sbjct: 181 KEMANSEIIDDLDEGDSTYATTEGDEINYIEASNELSDWRDQLAVQ 226

[Close]

BLAST of Pay0012566.1 vs. ExPASy TrEMBL
Match: A0A5D3BXH4 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00290 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.2e-105
Identity = 204/249 (81.93%), Postives = 208/249 (83.53%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRRF SILCHLL TTAGLVGIEVIDVEEMV MFLHILTHDVKNRMIQRQFVRSGETVSR
Sbjct: 1   MDRRFFSILCHLLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPRYK 120
           HFN VLLA LRLHDELLKKLQP TNSCTD RWKWFE+CLGALD TYIKVNVSATDRPRYK
Sbjct: 61  HFNLVLLATLRLHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYK 120

Query: 121 TRKGEVATNVLGVCDTKA------FG----------------------LLKGCWKILRGK 180
           TRKGEVATNVLGVCDTK       FG                      + KG WKILRGK
Sbjct: 121 TRKGEVATNVLGVCDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGRWKILRGK 180

Query: 181 SYYPVNVQCRTIMACYLLHNLINREMANSEIIDDLDEGDSTYATTEGDEINYIEASNELS 221
           SYYPVNVQCRTIMAC LLHNLIN+EMANSEIIDDLDEGDSTYATTEGDEINYIEASNELS
Sbjct: 181 SYYPVNVQCRTIMACCLLHNLINKEMANSEIIDDLDEGDSTYATTEGDEINYIEASNELS 240

[Close]

BLAST of Pay0012566.1 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.8e-90
Identity = 187/309 (60.52%), Postives = 196/309 (63.43%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRR  +ILCHLLRTTA LVG EVIDVEEMV MFLHIL HD+KNR+IQR+FVRSGETVSR
Sbjct: 1   MDRRCFAILCHLLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQ-PTNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPRYK 120
           HFN VLL++LRLH+ELLKK Q  TNSC DPRWKWFE+CLGALD TYIKVNVSATDRPRY 
Sbjct: 61  HFNLVLLSVLRLHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYS 120

Query: 121 TRKGEVATNVLGVCDTK------------------------------------------- 180
           TRKGEVA NVLGVCDTK                                           
Sbjct: 121 TRKGEVAINVLGVCDTKGDFVFVLSGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAG 180

Query: 181 ------------------------------------------------AFGLLKGCWKIL 218
                                                           AF LLKGCW IL
Sbjct: 181 YSNVEGFLAPYRGERYHLSEWHGGSNAPTTAREFFNMKHSSARNVIKRAFWLLKGCWAIL 240

[Close]

BLAST of Pay0012566.1 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 191/311 (61.41%), Postives = 195/311 (62.70%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRR  +ILCHLLRTTAGLV  EVIDVEEMV MFLHIL H VKNRMIQR+FVRSGETVSR
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHVVKNRMIQREFVRSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCTDPRWKWFESCLGALD--GTYIKVNVSATDRPR 120
           HFN VLLA  RLHDELLKK QP TNSCTDPRWKWFE     LD  GTYIKVNVSATDRPR
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFEVNTNCLDSNGTYIKVNVSATDRPR 120

Query: 121 YKTRKGEVATNVLGVCDTK----------------------------------------- 180
           Y+TRKGEVATNVLG CDTK                                         
Sbjct: 121 YRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCD 180

Query: 181 --------------------------------------------------AFGLLKGCWK 218
                                                             AFGLLKGCW 
Sbjct: 181 AGYPNAEGFLAPYRGERYHLSEWRGESNAPTTTREFFNMKHSSSRNVIERAFGLLKGCWA 240

[Close]

BLAST of Pay0012566.1 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.4e-89
Identity = 178/239 (74.48%), Postives = 188/239 (78.66%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRR  +ILCHLLRT+AGLVG EVIDVEEMV MFLHIL HDVKNRMIQ++F RSGETVSR
Sbjct: 1   MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPR-- 120
           HFN VLLAILRLHDELLKK QP TNSCTDPRWKWFE+CLGALDGTYIKVNVSA DRPR  
Sbjct: 61  HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSAIDRPRGE 120

Query: 121 -------------------YKTRKGEVATNVLGVCDTKAFGLLKGCWKILRGKSYYPVNV 180
                              +   K   A NV+     +AFGLLKG W ILRGKSYYPV+V
Sbjct: 121 RYHLSEWRGESNAPTTAREFFNMKHLSARNVI----ERAFGLLKGHWTILRGKSYYPVDV 180

Query: 181 QCRTIMACYLLHNLINREMANSEIIDDLDEGDSTYATTEGDEINYIEASNELSEWRDQL 218
           QCRTIMAC LLHNLI REM N+EIIDDLDEGDSTYATT GDEINYIEASNE SE RDQL
Sbjct: 181 QCRTIMACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQL 235

[Close]

BLAST of Pay0012566.1 vs. NCBI nr
Match: XP_008456821.1 (PREDICTED: uncharacterized protein LOC103496660 [Cucumis melo])

HSP 1 Score: 411.0 bits (1055), Expect = 6.5e-111
Identity = 207/226 (91.59%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRRF SILCHLL TTAGLVGIEVIDVEEMV MFLHILTHDVKNRMIQRQFVRSGETVSR
Sbjct: 1   MDRRFFSILCHLLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPRYK 120
           HFN VLLA LRLHDELLKKLQP TNSCTD RWKWFE+CLGALD TYIKVNVSATDRPRYK
Sbjct: 61  HFNLVLLATLRLHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYK 120

Query: 121 TRKGEVATNVLGVCDTK-----AFGLLKGCWKILRGKSYYPVNVQCRTIMACYLLHNLIN 180
           TRKGEVATNVLGVCDTK     AFGLLKG WKILRGKSYYPVNVQCRTIMAC LLHNLIN
Sbjct: 121 TRKGEVATNVLGVCDTKECLERAFGLLKGRWKILRGKSYYPVNVQCRTIMACCLLHNLIN 180

Query: 181 REMANSEIIDDLDEGDSTYATTEGDEINYIEASNELSEWRDQLVVQ 221
           +EMANSEIIDDLDEGDSTYATTEGDEINYIEASNELS+WRDQL VQ
Sbjct: 181 KEMANSEIIDDLDEGDSTYATTEGDEINYIEASNELSDWRDQLAVQ 226

[Close]

BLAST of Pay0012566.1 vs. NCBI nr
Match: KAA0031677.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK04433.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 392.5 bits (1007), Expect = 2.4e-105
Identity = 204/249 (81.93%), Postives = 208/249 (83.53%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRRF SILCHLL TTAGLVGIEVIDVEEMV MFLHILTHDVKNRMIQRQFVRSGETVSR
Sbjct: 1   MDRRFFSILCHLLWTTAGLVGIEVIDVEEMVAMFLHILTHDVKNRMIQRQFVRSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPRYK 120
           HFN VLLA LRLHDELLKKLQP TNSCTD RWKWFE+CLGALD TYIKVNVSATDRPRYK
Sbjct: 61  HFNLVLLATLRLHDELLKKLQPVTNSCTDSRWKWFENCLGALDDTYIKVNVSATDRPRYK 120

Query: 121 TRKGEVATNVLGVCDTKA------FG----------------------LLKGCWKILRGK 180
           TRKGEVATNVLGVCDTK       FG                      + KG WKILRGK
Sbjct: 121 TRKGEVATNVLGVCDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGRWKILRGK 180

Query: 181 SYYPVNVQCRTIMACYLLHNLINREMANSEIIDDLDEGDSTYATTEGDEINYIEASNELS 221
           SYYPVNVQCRTIMAC LLHNLIN+EMANSEIIDDLDEGDSTYATTEGDEINYIEASNELS
Sbjct: 181 SYYPVNVQCRTIMACCLLHNLINKEMANSEIIDDLDEGDSTYATTEGDEINYIEASNELS 240

[Close]

BLAST of Pay0012566.1 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.4e-89
Identity = 187/309 (60.52%), Postives = 196/309 (63.43%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRR  +ILCHLLRTTA LVG EVIDVEEMV MFLHIL HD+KNR+IQR+FVRSGETVSR
Sbjct: 1   MDRRCFAILCHLLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQ-PTNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPRYK 120
           HFN VLL++LRLH+ELLKK Q  TNSC DPRWKWFE+CLGALD TYIKVNVSATDRPRY 
Sbjct: 61  HFNLVLLSVLRLHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYS 120

Query: 121 TRKGEVATNVLGVCDTK------------------------------------------- 180
           TRKGEVA NVLGVCDTK                                           
Sbjct: 121 TRKGEVAINVLGVCDTKGDFVFVLSGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAG 180

Query: 181 ------------------------------------------------AFGLLKGCWKIL 218
                                                           AF LLKGCW IL
Sbjct: 181 YSNVEGFLAPYRGERYHLSEWHGGSNAPTTAREFFNMKHSSARNVIKRAFWLLKGCWAIL 240

[Close]

BLAST of Pay0012566.1 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 339.0 bits (868), Expect = 3.1e-89
Identity = 191/311 (61.41%), Postives = 195/311 (62.70%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRR  +ILCHLLRTTAGLV  EVIDVEEMV MFLHIL H VKNRMIQR+FVRSGETVSR
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHVVKNRMIQREFVRSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCTDPRWKWFESCLGALD--GTYIKVNVSATDRPR 120
           HFN VLLA  RLHDELLKK QP TNSCTDPRWKWFE     LD  GTYIKVNVSATDRPR
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFEVNTNCLDSNGTYIKVNVSATDRPR 120

Query: 121 YKTRKGEVATNVLGVCDTK----------------------------------------- 180
           Y+TRKGEVATNVLG CDTK                                         
Sbjct: 121 YRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCD 180

Query: 181 --------------------------------------------------AFGLLKGCWK 218
                                                             AFGLLKGCW 
Sbjct: 181 AGYPNAEGFLAPYRGERYHLSEWRGESNAPTTTREFFNMKHSSSRNVIERAFGLLKGCWA 240

[Close]

BLAST of Pay0012566.1 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 337.4 bits (864), Expect = 9.1e-89
Identity = 178/239 (74.48%), Postives = 188/239 (78.66%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MDRR  +ILCHLLRT+AGLVG EVIDVEEMV MFLHIL HDVKNRMIQ++F RSGETVSR
Sbjct: 1   MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCTDPRWKWFESCLGALDGTYIKVNVSATDRPR-- 120
           HFN VLLAILRLHDELLKK QP TNSCTDPRWKWFE+CLGALDGTYIKVNVSA DRPR  
Sbjct: 61  HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFENCLGALDGTYIKVNVSAIDRPRGE 120

Query: 121 -------------------YKTRKGEVATNVLGVCDTKAFGLLKGCWKILRGKSYYPVNV 180
                              +   K   A NV+     +AFGLLKG W ILRGKSYYPV+V
Sbjct: 121 RYHLSEWRGESNAPTTAREFFNMKHLSARNVI----ERAFGLLKGRWTILRGKSYYPVDV 180

Query: 181 QCRTIMACYLLHNLINREMANSEIIDDLDEGDSTYATTEGDEINYIEASNELSEWRDQL 218
           QCRTIMAC LLHNLI REM N+EIIDDLDEGDSTYATT GDEINYIEASNE SE RDQL
Sbjct: 181 QCRTIMACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQL 235

[Close]

BLAST of Pay0012566.1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-14
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 1   MDRRFLSILCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSR 60
           MD+     LC LL+T   L     I +E  + +FL I+ H+++ R +Q  F  SGET+SR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNYVLLAILRLHDELLKKLQP-TNSCT----DPRWKWFESCLGALDGTYIKVNVSATDR 120
           HFN VL A++ +  +     QP +NS T    DP   +F+ C+G +D  +I V V   ++
Sbjct: 108 HFNNVLNAVIAISKDF---FQPNSNSDTLENDDP---YFKDCVGVVDSFHIPVMVGVDEQ 167

Query: 121 PRYKTRKGEVATNVL 131
             ++   G +  NVL
Sbjct: 168 GPFRNGNGLLTQNVL 176

[Close]

BLAST of Pay0012566.1 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-12
Identity = 48/153 (31.37%), Postives = 69/153 (45.10%), Query Frame = 0


Query: 9   LCHLLRTTAGLVGIEVIDVEEMVPMFLHILTHDVKNRMIQRQFVRSGETVSRHFNYVLLA 68
           LC++L+T   L     I +EE V MFL I  H+   R +  +F R+ ETV R F  VL A
Sbjct: 80  LCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQRKFREVLTA 139

Query: 69  ILRLHDELLKKLQ-------PTNSCTDPR-WKWFESCLGALDGTYIKVNVSATDRPRYKT 128
              L  + ++          P     D R W +F   +GA+DGT++ V V    +  Y  
Sbjct: 140 TELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWN 199

Query: 129 RKGEVATNVLGVCDTKAFGLLKGCWKILRGKSY 154
           R    + N++ +CD K   L    W    G  Y
Sbjct: 200 RHDNASLNIMAICDLKM--LFTYIWNGAPGSCY 230

The following BLAST results are available for this feature:

BLAST of Pay0012566.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0012566.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5E3	3.1e-111	91.59	uncharacterized protein LOC103496660 OS=Cucumis melo OX=3656 GN=LOC103496660 PE=...	[more]
A0A5D3BXH4	1.2e-105	81.93	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SQU2	6.8e-90	60.52	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3DG22	1.5e-89	61.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CDG6	4.4e-89	74.48	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Pay0012566.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456821.1	6.5e-111	91.59	PREDICTED: uncharacterized protein LOC103496660 [Cucumis melo]	[more]
KAA0031677.1	2.4e-105	81.93	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK04433.1 putative nucleas...	[more]
KAA0033290.1	1.4e-89	60.52	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
KAA0062747.1	3.1e-89	61.41	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
XP_008441953.1	9.1e-89	74.48	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put...	[more]

BLAST of Pay0012566.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	6.0e-14	34.81	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	4.3e-12	31.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..134
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0012566	Pay0012566	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0012566.1-cds	Pay0012566.1-cds-chr03:21300894..21301178	CDS
Pay0012566.1-cds	Pay0012566.1-cds-chr03:21301270..21301393	CDS
Pay0012566.1-cds	Pay0012566.1-cds-chr03:21301743..21301996	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0012566.1-exon	Pay0012566.1-exon-chr03:21300894..21301178	exon
Pay0012566.1-exon	Pay0012566.1-exon-chr03:21301270..21301393	exon
Pay0012566.1-exon	Pay0012566.1-exon-chr03:21301743..21301996	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0012566.1	Pay0012566.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding