Pay0012311.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0012311.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Photosystem I assembly protein Ycf3
Location	Contig00288_ERROPOS136135: 61171 .. 63175 (+)
Sequence length	516
RNA-Seq Expression	Pay0012311.1
Synteny	Pay0012311.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAGATCTGGTGGGATAAATGGAAATTTTATCGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCCGGGGAAAAAGAGGCATTCACCTATTACAGAGATGGTGCGATTTGATTTTTTTTTTTTTCAATTTTCTTTACCGCTCTCCGTCTTAGTAGAAAGACACAGTATTCGGGATAGAAAGAAAACAATAATTGAAATAAATCTACGCTTCTTGGAGGTGCAATTTGAAAATCAAAAAATTCCTTCTGTCGTGTATCCCCGATTAATGTAACCTTAGATGCTAGAATTGTCGATTCTAGTATTAAGCGAAAGGTGTAACCTATGGATTAAGTCAACCCTACTCCACTAGTAAAAATATTCACTAGTAAAAATAGGTAGCAGAGGGGAAGAAGCACTACACCTAGGAATCAACAACACGAAAACTTTGTTATAAATTATACCTTTTCCTTATCGGGATCGGAACTTAGAAAAATGGTTGGGACAACAAACATCCATCTCGTTTGTATTTTGGATACCTGTATAACCATCGAAGACTGTTGAAGTGACTAATTCCTGGAAATTTAGAGGCGTTGAGGACAAAGAAATTGTTAGAGTTACCATTTTTATTTTTATCTAGTAAACCATGCTTGATGTTAAGAAAAGATCTTTTACAGGAAGGTTGGCTAGAGATTTTTTGTAAAAACGCTAGTCCCATGAGTTCATAATGAGAGTATTTCAATGTTTTTTGATTTCATGTATTATTCTCATCTCATTATGCGCATCAGATAAAGGGGGAGCCGTATGAGATGAAAATCTCACGTACGGTTCTGGAACGGAGATTCTTTCAATGGAATAACGAACGACCGTAACGGATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAGAGAAAATTCGCTAATAAATACTAAAAAAAATAGGCTTTCTACATATGTATTGTCCAAACTAACGATTTGTATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGCAGAAATATGAAGAAATAGGTATGCCTAGATACTTTATTCTATGGATAAAGGATCTAATTGATAGAAGAAGCACCGTAAAGATCAATTAGTCAGGTTTTTGGCCGATACAATAAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCACTTATGTAATAGGGTGGATCCCCTACAATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGTAACGATAGTGGGTGGAATGCCTATGCTTTATTCTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATTGAAGTTTGAAACTTATATAATTAACCGCTTTTGCTTAACTCGAGAAAAAAAAATGGGCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGATAAATTTTTTTAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

mRNA sequence

ATGCCTAGATCTGGTGGGATAAATGGAAATTTTATCGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCCGGGGAAAAAGAGGCATTCACCTATTACAGAGATGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

Coding sequence (CDS)

ATGCCTAGATCTGGTGGGATAAATGGAAATTTTATCGATAAGACCTTTTCAATTGTAGCCAATATCTTATTACGAATAATTCCGACAACTTCCGGGGAAAAAGAGGCATTCACCTATTACAGAGATGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

Protein sequence

MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK

Homology

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BLAST of Pay0012311.1 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 4.8e-88
Identity = 162/178 (91.01%), Postives = 162/178 (91.01%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYG 120
           EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 RNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
                   RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 121 --------RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]

BLAST of Pay0012311.1 vs. ExPASy Swiss-Prot
Match: Q49KZ7 (Photosystem I assembly protein Ycf3 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-83
Identity = 157/178 (88.20%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRS-RINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYG 120
           EAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 RNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
                   RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 --------RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]

BLAST of Pay0012311.1 vs. ExPASy Swiss-Prot
Match: A0ZZ36 (Photosystem I assembly protein Ycf3 OS=Gossypium barbadense OX=3634 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-83
Identity = 157/178 (88.20%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRS-QINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYG 120
           EAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 RNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
                   RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 --------RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]

BLAST of Pay0012311.1 vs. ExPASy Swiss-Prot
Match: Q2L906 (Photosystem I assembly protein Ycf3 OS=Gossypium hirsutum OX=3635 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-83
Identity = 157/178 (88.20%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRS-QINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYG 120
           EAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 RNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
                   RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 --------RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]

BLAST of Pay0012311.1 vs. ExPASy Swiss-Prot
Match: Q9MTP0 (Photosystem I assembly protein Ycf3 OS=Oenothera elata subsp. hookeri OX=85636 GN=ycf3 PE=3 SV=3)

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-83
Identity = 157/178 (88.20%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD-------GNYAEALQNYY 60
           MPRS  INGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD       GNYAEALQNYY
Sbjct: 1   MPRS-RINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYY 60

Query: 61  EAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYG 120
           EAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 
Sbjct: 61  EAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY- 120

Query: 121 RNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
                   RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 --------RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]

BLAST of Pay0012311.1 vs. ExPASy TrEMBL
Match: A0A6G8QRP2 (Photosystem I assembly protein Ycf3 OS=Rubus amabilis OX=616954 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 164/175 (93.71%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GRNL
Sbjct: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRNL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]

BLAST of Pay0012311.1 vs. ExPASy TrEMBL
Match: A0A7T7D536 (Hypothetical chloroplast RF34 OS=Rubus sachalinensis OX=59502 GN=ycf3 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 164/175 (93.71%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GRNL
Sbjct: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRNL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]

BLAST of Pay0012311.1 vs. ExPASy TrEMBL
Match: A0A4Y1QZ78 (Tetratricopeptide repeat-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_006155 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.1e-86
Identity = 161/175 (92.00%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GR+L
Sbjct: 61  DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRDL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QG SEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGYSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]

BLAST of Pay0012311.1 vs. ExPASy TrEMBL
Match: A0A6B9IN65 (Photosystem I assembly protein Ycf3 OS=Prunus mira OX=151332 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.1e-86
Identity = 161/175 (92.00%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GR+L
Sbjct: 61  DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRDL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QG SEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGYSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]

BLAST of Pay0012311.1 vs. ExPASy TrEMBL
Match: A0A346TMS9 (Photosystem I assembly protein Ycf3 OS=Prunus pedunculata OX=983195 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.1e-86
Identity = 161/175 (92.00%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GR+L
Sbjct: 61  DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRDL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QG SEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGYSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]

BLAST of Pay0012311.1 vs. NCBI nr
Match: YP_009758243.1 (hypothetical chloroplast RF34 [Rubus amabilis] >YP_010142801.1 hypothetical chloroplast RF34 [Rubus sachalinensis] >QIN90022.1 hypothetical chloroplast RF34 [Rubus amabilis] >QQL03818.1 hypothetical chloroplast RF34 [Rubus sachalinensis])

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-88
Identity = 164/175 (93.71%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GRNL
Sbjct: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRNL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]

BLAST of Pay0012311.1 vs. NCBI nr
Match: BBN68611.1 (Tetratricopeptide repeat-like superfamily protein [Prunus dulcis])

HSP 1 Score: 328.2 bits (840), Expect = 4.3e-86
Identity = 161/175 (92.00%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 27  MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 86

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GR+L
Sbjct: 87  DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRDL 146

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QG SEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 147 PPYSDRGEQAVQQGYSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 200

[Close]

BLAST of Pay0012311.1 vs. NCBI nr
Match: YP_009744688.1 (hypothetical chloroplast RF34 [Prunus triloba] >AXU40810.1 hypothetical chloroplast RF34 [Prunus pedunculata] >QGZ08093.1 hypothetical chloroplast RF34 [Prunus ferganensis] >QGZ08179.1 hypothetical chloroplast RF34 [Prunus mira] >QGZ08447.1 hypothetical chloroplast RF34 [Prunus tangutica] >BBG97134.1 Tetratricopeptide repeat-like superfamily protein [Prunus dulcis])

HSP 1 Score: 328.2 bits (840), Expect = 4.3e-86
Identity = 161/175 (92.00%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GR+L
Sbjct: 61  DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRDL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QG SEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGYSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]

BLAST of Pay0012311.1 vs. NCBI nr
Match: BBN69936.1 (Tetratricopeptide repeat-like superfamily protein, partial [Prunus dulcis])

HSP 1 Score: 328.2 bits (840), Expect = 4.3e-86
Identity = 161/175 (92.00%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 224 MSRS-GINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 283

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GR+L
Sbjct: 284 DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRDL 343

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QG SEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 344 PPYSDRGEQAVQQGYSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 397

[Close]

BLAST of Pay0012311.1 vs. NCBI nr
Match: QGZ08007.1 (hypothetical chloroplast RF34 [Prunus davidiana])

HSP 1 Score: 327.0 bits (837), Expect = 9.6e-86
Identity = 160/175 (91.43%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 1   MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60
           M RS GINGNFIDKTFSI+ANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI
Sbjct: 1   MSRS-GINGNFIDKTFSILANILLRIIPTTSGEKEAFTYYRDGNYAEALQNYYEAMRLEI 60

Query: 61  DPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY----GRNL 120
           DPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICHY    GR+L
Sbjct: 61  DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYYGSKGRDL 120

Query: 121 PAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 172
           P YSDRGEQA++QG SEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 121 PPYSDRGEQAVQQGYSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 174

[Close]

BLAST of Pay0012311.1 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-62
Identity = 113/130 (86.92%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 42  DGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQ 101
           +GNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQ
Sbjct: 6   EGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQ 65

Query: 102 AFNNMAVICHYGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQ 161
           AFNNMAVICHY         RGEQAI+QGDSE+AEAWF QAAEYWKQAI LTPGNYIEAQ
Sbjct: 66  AFNNMAVICHY---------RGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQ 125

Query: 162 NWLKITRRFK 172
           NWL ITRRF+
Sbjct: 126 NWLTITRRFE 126

The following BLAST results are available for this feature:

BLAST of Pay0012311.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH4	4.8e-88	91.01	Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1	[more]
Q49KZ7	2.1e-83	88.20	Photosystem I assembly protein Ycf3 OS=Eucalyptus globulus subsp. globulus OX=71...	[more]
A0ZZ36	2.1e-83	88.20	Photosystem I assembly protein Ycf3 OS=Gossypium barbadense OX=3634 GN=ycf3 PE=3...	[more]
Q2L906	2.1e-83	88.20	Photosystem I assembly protein Ycf3 OS=Gossypium hirsutum OX=3635 GN=ycf3 PE=3 S...	[more]
Q9MTP0	2.1e-83	88.20	Photosystem I assembly protein Ycf3 OS=Oenothera elata subsp. hookeri OX=85636 G...	[more]

BLAST of Pay0012311.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6G8QRP2	1.0e-88	93.71	Photosystem I assembly protein Ycf3 OS=Rubus amabilis OX=616954 GN=ycf3 PE=3 SV=...	[more]
A0A7T7D536	1.0e-88	93.71	Hypothetical chloroplast RF34 OS=Rubus sachalinensis OX=59502 GN=ycf3 PE=4 SV=1	[more]
A0A4Y1QZ78	2.1e-86	92.00	Tetratricopeptide repeat-like superfamily protein OS=Prunus dulcis OX=3755 GN=Pr...	[more]
A0A6B9IN65	2.1e-86	92.00	Photosystem I assembly protein Ycf3 OS=Prunus mira OX=151332 GN=ycf3 PE=3 SV=1	[more]
A0A346TMS9	2.1e-86	92.00	Photosystem I assembly protein Ycf3 OS=Prunus pedunculata OX=983195 GN=ycf3 PE=3...	[more]

BLAST of Pay0012311.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009758243.1	2.1e-88	93.71	hypothetical chloroplast RF34 [Rubus amabilis] >YP_010142801.1 hypothetical chlo...	[more]
BBN68611.1	4.3e-86	92.00	Tetratricopeptide repeat-like superfamily protein [Prunus dulcis]	[more]
YP_009744688.1	4.3e-86	92.00	hypothetical chloroplast RF34 [Prunus triloba] >AXU40810.1 hypothetical chloropl...	[more]
BBN69936.1	4.3e-86	92.00	Tetratricopeptide repeat-like superfamily protein, partial [Prunus dulcis]	[more]
QGZ08007.1	9.6e-86	91.43	hypothetical chloroplast RF34 [Prunus davidiana]	[more]

BLAST of Pay0012311.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00360.1	6.0e-62	86.92	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 66..99 e-value: 3.2E-5 score: 33.4 coord: 116..149 e-value: 120.0 score: 5.3 coord: 29..62 e-value: 200.0 score: 3.5
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 66..99 score: 10.8564
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 23..169 e-value: 2.2E-18 score: 68.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 36..159
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 67..97 e-value: 5.5E-9 score: 35.5
None	No IPR available	PANTHER	PTHR26312:SF159	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3	coord: 1..171
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 1..171
None	No IPR available	PROSITE	PS50293	TPR_REGION	coord: 66..97 score: 9.159513

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0012311	Pay0012311	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0012311.1-exon	Pay0012311.1-exon-Contig00288_ERROPOS136135:61171..61297	exon
Pay0012311.1-exon	Pay0012311.1-exon-Contig00288_ERROPOS136135:62068..62276	exon
Pay0012311.1-exon	Pay0012311.1-exon-Contig00288_ERROPOS136135:62996..63175	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0012311.1-cds	Pay0012311.1-cds-Contig00288_ERROPOS136135:61171..61297	CDS
Pay0012311.1-cds	Pay0012311.1-cds-Contig00288_ERROPOS136135:62068..62276	CDS
Pay0012311.1-cds	Pay0012311.1-cds-Contig00288_ERROPOS136135:62996..63175	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0012311.1	Pay0012311.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
biological_process	GO:0006412	translation
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0005515	protein binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome