Pay0008622.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0008622.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Unknown protein
Location	chr02: 13602745 .. 13603822 (+)
Sequence length	1078
RNA-Seq Expression	Pay0008622.1
Synteny	Pay0008622.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCATCACATGGCAAGGCGGCAAGCAGCAAAGTAGGCCAACTCCCAACGCACATCACACGGATCCCACATCGCTTAATTCCCCCTTTTCCACTTTCCCGACAACTGTCTTCCCTTCAACCTCCCCTTTAATTTCCTCACTCCCTATATAAACCCCTTCTTCTCCCTTCCCCTTCTTTCCCTCAAACCCCCTCCGGCACCGGCCATTCCCCCACGCTCTTCTCCATGGCCGACGCCTTTCTCAGATGCGTCTACCACGGCTGCATCGCTGGCCCCGACGCCGGGATCGACCGCCGTCCTTACCATAAGAACTGCAGCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCCTTGTCTAAACATAAGTCCGTCTCCTACCCGATCAGACGAGCCTGGAGTGAGGGCTGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCGTTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTCGAAAGCCTTGGATCTTACAAGAGATGAGCCGTATTGTCGTTCTGATTTTTGTTTCTTATTTCTTGTTTTGTTGATCTAATTTGATTTTAGTTTTGTAATATATATATCTTATGTGGAATTCTTGATTTGGAAAGAGTGAAGTGATGAATGTAGATTTTAATTACTTGACTCTGTTTCTTCTTCTAATCTTTGTTGATTGATTGATTCATTCATTCATTGATTTAATGGAATGGATTTTTGTTCTTGATTTGGGTGAAATGATTCTCGTTTGAAAATCATTTCATCTATTACAAATTGAGGTTGAAGTCTTCTGGATCCAAGTTTCTTTAGGCGAAATTCAGGAATCTTGTTCCATTCTTTCCATGTGATGAAGATGGAATGGAAGCATCCATCGATTGCTTTTAACCGTTGATCCATTTTTTCTTGGTTTCTGCGATTATAAAAATATCTTTACTTTTTACTCTATTTGTGGGCCAATAAATATATATAATATTAAAATATCAATTTCGTCCCTATACTACGTTAAAATATCAATTTGGTACCTACAAGTTTCAATTTTATTCTATGTAATTTTAAATATTCAATTTCAGTTCC

mRNA sequence

GGCATCACATGGCAAGGCGGCAAGCAGCAAAGTAGGCCAACTCCCAACGCACATCACACGGATCCCACATCGCTTAATTCCCCCTTTTCCACTTTCCCGACAACTGTCTTCCCTTCAACCTCCCCTTTAATTTCCTCACTCCCTATATAAACCCCTTCTTCTCCCTTCCCCTTCTTTCCCTCAAACCCCCTCCGGCACCGGCCATTCCCCCACGCTCTTCTCCATGGCCGACGCCTTTCTCAGATGCGTCTACCACGGCTGCATCGCTGGCCCCGACGCCGGGATCGACCGCCGTCCTTACCATAAGAACTGCAGCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCCTTGTCTAAACATAAGTCCGTCTCCTACCCGATCAGACGAGCCTGGAGTGAGGGCTGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCGTTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTCGAAAGCCTTGGATCTTACAAGAGATGAGCCGTATTGTCGTTCTGATTTTTGTTTCTTATTTCTTGTTTTGTTGATCTAATTTGATTTTAGTTTTGTAATATATATATCTTATGTGGAATTCTTGATTTGGAAAGAGTGAAGTGATGAATGTAGATTTTAATTACTTGACTCTGTTTCTTCTTCTAATCTTTGTTGATTGATTGATTCATTCATTCATTGATTTAATGGAATGGATTTTTGTTCTTGATTTGGGTGAAATGATTCTCGTTTGAAAATCATTTCATCTATTACAAATTGAGGTTGAAGTCTTCTGGATCCAAGTTTCTTTAGGCGAAATTCAGGAATCTTGTTCCATTCTTTCCATGTGATGAAGATGGAATGGAAGCATCCATCGATTGCTTTTAACCGTTGATCCATTTTTTCTTGGTTTCTGCGATTATAAAAATATCTTTACTTTTTACTCTATTTGTGGGCCAATAAATATATATAATATTAAAATATCAATTTCGTCCCTATACTACGTTAAAATATCAATTTGGTACCTACAAGTTTCAATTTTATTCTATGTAATTTTAAATATTCAATTTCAGTTCC

Coding sequence (CDS)

ATGGCCGACGCCTTTCTCAGATGCGTCTACCACGGCTGCATCGCTGGCCCCGACGCCGGGATCGACCGCCGTCCTTACCATAAGAACTGCAGCTGCGCTCTTCACGACCGAGATAATAGACGCTGTTCTCATTCCTTGTCTAAACATAAGTCCGTCTCCTACCCGATCAGACGAGCCTGGAGTGAGGGCTGTTTGGCTATGGTTGCTGCTTCTGCGGCTTCTGGCGTTTCTTCTCCTTCTTCGCCGTCCATGGATCAGGTCGAAAGCCTTGGATCTTACAAGAGATGA

Protein sequence

MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWSEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR

Homology

[Close]

BLAST of Pay0008622.1 vs. ExPASy TrEMBL
Match: A0A1S3B9X6 (uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.1e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 96
          SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95

[Close]

BLAST of Pay0008622.1 vs. ExPASy TrEMBL
Match: A0A0A0LWK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADA LRCVY+GCI  PDA IDRRPYHKNCSCALHDRDN+RCSHS+SKHKSVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 96
          SEGCLAMV   AASG+SSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMV---AASGISSPSSPSMDQVESLGSYKR 92

[Close]

BLAST of Pay0008622.1 vs. ExPASy TrEMBL
Match: A0A061GQ94 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD   R +Y GCIAG D GI+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSPSSPSMDQVESLGSYK 95
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHR 96

[Close]

BLAST of Pay0008622.1 vs. ExPASy TrEMBL
Match: B9SC26 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0702130 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD F R VY GC++G D GI+RRPYH+NC CALH++    C H +SK K+VSYPIRRAWS
Sbjct: 6  ADGFFRYVYDGCLSGGDMGIERRPYHRNCRCALHNKSKDNCPHGMSKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSP-SSPSM 85
          EGCL++ A +A S  SSP SSPS+
Sbjct: 66 EGCLSLAAVAANSCHSSPSSSPSL 89

[Close]

BLAST of Pay0008622.1 vs. ExPASy TrEMBL
Match: A0A6J0ZQ85 (uncharacterized protein LOC110411242 OS=Herrania umbratica OX=108875 GN=LOC110411242 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 54/93 (58.06%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD   R +Y GCIAG D GI+RRPYH+NC CALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRPLYEGCIAGCDIGIERRPYHRNCRCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSPSSPSMDQVESLGSYK 95
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHQ 96

[Close]

BLAST of Pay0008622.1 vs. NCBI nr
Match: XP_008443899.1 (PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 6.4e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 96
          SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 95

[Close]

BLAST of Pay0008622.1 vs. NCBI nr
Match: KAE8653037.1 (hypothetical protein Csa_019637 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADA LRCVY+GCI  PDA IDRRPYHKNCSCALHDRDN+RCSHS+SKHKSVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLG 92
          SEGCLAMV   AASG+SSPSSPSMDQ+E +G
Sbjct: 61 SEGCLAMV---AASGISSPSSPSMDQIEGVG 88

[Close]

BLAST of Pay0008622.1 vs. NCBI nr
Match: KAG6587850.1 (hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 70/95 (73.68%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60
          MADA    VYHGCIA  DA I RRPYHKNC CALHDRDNRRCSHS+SKH +VSYPIRRAW
Sbjct: 1  MADALFGSVYHGCIATCDAEIARRPYHKNCGCALHDRDNRRCSHSMSKHSTVSYPIRRAW 60

Query: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESLGSYKR 96
          SEGCLAM AAS  SG+SSPSS    + E LGS +R
Sbjct: 61 SEGCLAMAAAS-GSGISSPSSSPSMESEGLGSNRR 94

[Close]

BLAST of Pay0008622.1 vs. NCBI nr
Match: XP_007013703.2 (PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao])

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-21
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD   R +Y GCIAG D GI+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSPSSPSMDQVESLGSYK 95
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHR 96

[Close]

BLAST of Pay0008622.1 vs. NCBI nr
Match: EOY31322.1 (Uncharacterized protein TCM_038276 [Theobroma cacao])

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-21
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAWS 61
          AD   R +Y GCIAG D GI+RRPYH+NCSCALHD+    C H+  K K+VSYPIRRAWS
Sbjct: 6  ADGLFRSLYEGCIAGCDIGIERRPYHRNCSCALHDKSRGNCPHAFPKCKNVSYPIRRAWS 65

Query: 62 EGCLAMVAASAASGVSSPSSPSMDQVESLGSYK 95
          EGCLAM AAS  S  S  SSP+   V   G ++
Sbjct: 66 EGCLAMAAASCHS--SPSSSPAFSGVHGAGKHR 96

[Close]

BLAST of Pay0008622.1 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 2  ADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDR-------DNRRCSHSLSKH---KS 61
          AD   R ++ GCI+G D+ I+RRPYHKNC CALHD+        N+R   S  +H   +S
Sbjct: 3  ADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSES 62

Query: 62 VSYPIRRAWSEGCLAMV----AASAASGVSSPSSPS 84
          +S+PIRR+WSEG +  +    ++S++S + S SS S
Sbjct: 63 ISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSS 98

[Close]

BLAST of Pay0008622.1 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 3   DAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKH---KSVSYPIRRA 62
           D   R ++ GCI+  D+ I RRPYHKNC CALH+R     S +  +H   + V +PI+R+
Sbjct: 7   DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 63  WSEG-CLAMVAASAASGVSSPSSPSMDQVESLGS 93
           WSEG  LA+  AS++S  +  S  S   + +L S
Sbjct: 67  WSEGNSLALHLASSSSSSNLQSLSSSSSISTLAS 100

The following BLAST results are available for this feature:

BLAST of Pay0008622.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0008622.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9X6	3.1e-47	100.00	uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=...	[more]
A0A0A0LWK0	2.8e-40	88.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1	[more]
A0A061GQ94	1.7e-21	59.14	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1	[more]
B9SC26	1.1e-20	61.90	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0702130 PE=4 SV=1	[more]
A0A6J0ZQ85	1.4e-20	58.06	uncharacterized protein LOC110411242 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]

BLAST of Pay0008622.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443899.1	6.4e-47	100.00	PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo]	[more]
KAE8653037.1	1.0e-36	84.62	hypothetical protein Csa_019637 [Cucumis sativus]	[more]
KAG6587850.1	2.7e-29	73.68	hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_007013703.2	3.5e-21	59.14	PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao]	[more]
EOY31322.1	3.5e-21	59.14	Uncharacterized protein TCM_038276 [Theobroma cacao]	[more]

BLAST of Pay0008622.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46490.1	1.5e-14	43.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35110.1	1.9e-12	41.49	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 2..85
None	No IPR available	PANTHER	PTHR35121:SF2	BNAC04G52100D PROTEIN	coord: 2..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0008622	Pay0008622	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0008622.1-exon	Pay0008622.1-exon-chr02:13602745..13603822	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0008622.1-five_prime_utr	Pay0008622.1-five_prime_utr-chr02:13602745..13602967	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0008622.1-cds	Pay0008622.1-cds-chr02:13602968..13603255	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0008622.1-three_prime_utr	Pay0008622.1-three_prime_utr-chr02:13603256..13603822	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0008622.1	Pay0008622.1-protein	polypeptide