Pay0007888.1 (mRNA) Melon (Payzawat) v1

Overview
NamePay0007888.1
TypemRNA
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description40S ribosomal protein S18
Locationchr01: 8977092 .. 8979994 (-)
Sequence length1225
RNA-Seq ExpressionPay0007888.1
SyntenyPay0007888.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTAAAATTCCACGAAAGGAAGAGATAGAACGAAGTATGAAGAGGGTATATTGGTCAATTTAGTTTAGTCAGAAACCCTAGAATCTGATTGACAATATATAAAATCCTTCTCCACTCACCACTCAAAGATCTCCTCTGGTTCTTTCCTGCAGTTGCGCCGCCGGGAATTCTTCCAACCCCTTGCCTCTATCTTCATTCGCCATGGTAAGTAACTGCACTTTCTTCTTTCTCATTTTCCCTCATTGTTCTTCTACTTTTGTTAGGGTTTTATATTCTTCTTCGAATAATCGTTATTTTTTGTTGATCTGGTCTTTTTATTTTCCATCTAGTCACTGGTAGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTCAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACATCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTTTGCAAGAAGGCTGATGTCGACATGAACAAGAGGTACTTTACGTTTCCTTTTTCTTTATTTCTCCTCTTTTCCGCTTGTCTCATATCTAGTTTGATAGAAAAATTCGACGTTTATGAGTATTAAAAGGGTTTCATCCGTTGTTTTTAATTCTGCCTACTACGGATTTAAGGTATCAGTTCCTAATTATGTGCTAATAAATTTAGGTTTAAGTCTTACATTAAAAACCTCTAGATGTAAGATATTTGGGAATTGGCATAATGTAGGAGTTTGACTTGGGGGTACTGCTTATGGTTGAATGCTTGAAAGCTTTAGAATATTTGAAGGAGCTCATTGGTGTTACAGTAATAACACTGTAGTAAACTGGTATGGCATTTTTCTGCATGATCAGCTCAATCACTGTAGAACATATTTTATGCAGCATTCTGTAACGTTCTCGTTGGGTTAATATCATTGTGAGATTTAGACTTTTCTACAAGTTGGTTCTTGTCTGCAGCTGGAATATGAAAGTACGTAGGCCATAGTCGGGAAGAACAAGAAAAAAATACTATGAAAGCAGCAGGTGGAGTACAGGACCTTCAATCTTGAGTCTTCACATAGCCAGGACAAGGATGTCAATATTTAATGACTTTTTTTTGAAAACTGGGCCTAGTTGATGAAAAAGAGACTACAATCCTGATTTGACTTATAAGAGGAAGAAAACGGAACAGAAATATGAACTGCTCCTAGATTTTCGGCTGCTGGAGTTATCTGCTGCCGATTCTTTCTTTCTTCTTTGATATAATTTCACAACATATATTCCTGGTGCCTACCTGGGTCTGATGAGAGTGATGCATGAGAATAAAGCTAGTTCCTCTAGTTCACTGAAGGAAATGAGGCTAAATCTTAGTTATGACTTGATGGAAATTGCAAATAATCAGGAATTCCTTAGTCCATGACTTAAGTCAAACTCAACTGTTCCCCTTCAACGTCGACTTTTACAGGCATCTGAAACTCCTATTTGTTAAAATCCTGTTTTTATGATGGCCTCTTTCAAATCCTCTAGAAATTTGTTTGAATTTGAACCATGTATTTTTTAAGAATCCTTCACGAAGACTGAAGAAATTAGATTTGTAGCTTACCTTGGGATTTTCTTTAGTACAAGAGACACTGTTGCAATTATATTGTTCGAATTTATAATATACTAATATCTCTAGAGAGACTGGGGTAAGAGCAATTGATTCACATTTGTTGCTTGGTGCTGTAGTTTATTTAGGAAGTTCATGGTTTTGGGGTATGGTTTTTTGCACATCTAGTAGTTTATCTTTCTTTTGTTATATGTTTAATGACCTTGACCAAATTTGGTTTTAATTTATTGACCATTTTATTACCAGCCTAAAGGATGTTACGATTCAGTGTTCAGAGAAAAACTCAACTGGTTTGACTAATATACATCTTTGTTTTCATTTGTTATTTTGCAAACAGGGCTGGTGAACTAACTGCTGCCGAGTTGGATAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGAAAATATTCTCAAGTAGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGTAATATAATTGAAGTGTTTCTTCCAATGGCTGATATATTTTGTTTCTTGGATATTGAGTCTCACTCCTTGCATTATGTAAATTCATGGTTCACAATGATAAATCTTCGACATGATGAATGCAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCAGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGACGAGGGAAAACTGTCGGTGTCTCCAAGAAGCGTTGAGCATTTGCTTGTTTTTATAGTCGAGTATGTGTTTGGGCAAATCAAGTTCTTTGGCCTTTTAGTTGAACATTTGAGCTGTACTTTCTTTTTGGAACTTTTGTTTGGGATGTGGTATTTTTGTTTAAGTTTAACTCTTTTTTTTCTGTCTTTGATTAGGCTAGAAAAGGAAGTTTGATAGTGGCAAATGGTAAAGATTATGAATCCATATTGATCCTTTTGGTGTGAAAAAGTGTTGGAGAGATTTTATTTATAAAGTTGTTATTTGGTGCAATCAGGTTTACTTGAAGTCAGAGTGCCAGTTTAATAGGGTTGAGAAATCGTTTTGTTGATTTTCAAAAAATGTTTTGTTTTTTTAATTAATTGAATTTATAAACTCTAGGGCAAATATATATTTTCGGTTACAATATTAACAGTGATAATAGTAAGTTCAATGCCCAGTAATGCTGTTTTATGGATCAACTAGAAATTGGTTGACACAAAGGCACAGATTTAGGATAATAGTAAGTTCAATGACCAGTAATGCTGTTTTATTAAGAAAAGTAATCCTAACTGGAGAAAAAACCAG

mRNA sequence

CCTAAAATTCCACGAAAGGAAGAGATAGAACGAAGTATGAAGAGGGTATATTGGTCAATTTAGTTTAGTCAGAAACCCTAGAATCTGATTGACAATATATAAAATCCTTCTCCACTCACCACTCAAAGATCTCCTCTGGTTCTTTCCTGCAGTTGCGCCGCCGGGAATTCTTCCAACCCCTTGCCTCTATCTTCATTCGCCATGTCACTGGTAGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTCAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACATCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTTTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGATAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGAAAATATTCTCAAGTAGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCAGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGACGAGGGAAAACTGTCGGTGTCTCCAAGAAGCGTTGAGCATTTGCTTGTTTTTATAGTCGAGTATGTGTTTGGGCAAATCAAGTTCTTTGGCCTTTTAGTTGAACATTTGAGCTGTACTTTCTTTTTGGAACTTTTGTTTGGGATGTGGTATTTTTGTTTAAGTTTAACTCTTTTTTTTCTGTCTTTGATTAGGCTAGAAAAGGAAGTTTGATAGTGGCAAATGGTAAAGATTATGAATCCATATTGATCCTTTTGGTGTGAAAAAGTGTTGGAGAGATTTTATTTATAAAGTTGTTATTTGGTGCAATCAGGTTTACTTGAAGTCAGAGTGCCAGTTTAATAGGGTTGAGAAATCGTTTTGTTGATTTTCAAAAAATGTTTTGTTTTTTTAATTAATTGAATTTATAAACTCTAGGGCAAATATATATTTTCGGTTACAATATTAACAGTGATAATAGTAAGTTCAATGCCCAGTAATGCTGTTTTATGGATCAACTAGAAATTGGTTGACACAAAGGCACAGATTTAGGATAATAGTAAGTTCAATGACCAGTAATGCTGTTTTATTAAGAAAAGTAATCCTAACTGGAGAAAAAACCAG

Coding sequence (CDS)

ATGTCACTGGTAGCAAACGAGGATTTTCAGCACATTCTGCGTGTGCTCAACACTAACGTCGATGGGAAGCAGAAGATTATGTTTGCTCTCACATCAATTAAAGGTATTGGAAGACGTTTTGCTAACATCGTTTGCAAGAAGGCTGATGTCGACATGAACAAGAGGGCTGGTGAACTAACTGCTGCCGAGTTGGATAATCTCATGGTGGTTGTTGCCAATCCACGACAATTTAAAATTCCCGACTGGTTTTTGAATAGGCAGAAAGACTACAAGGATGGAAAATATTCTCAAGTAGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGGTTGAAGAAGATTAGGAACCACCGAGGTCTAAGGCACTACTGGGGCCTCAGAGTCCGTGGTCAGCACACTAAGACCACTGGTCGACGAGGGAAAACTGTCGGTGTCTCCAAGAAGCGTTGA

Protein sequence

MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Homology
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BLAST of Pay0007888.1 vs. ExPASy Swiss-Prot
Match: P34788 (40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.1e-79
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. ExPASy Swiss-Prot
Match: Q8ISP0 (40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-66
Identity = 118/152 (77.63%), Postives = 141/152 (92.76%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]
BLAST of Pay0007888.1 vs. ExPASy Swiss-Prot
Match: Q8IT98 (40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 115/152 (75.66%), Postives = 141/152 (92.76%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

[Close]
BLAST of Pay0007888.1 vs. ExPASy Swiss-Prot
Match: Q8JGS9 (40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-63
Identity = 113/152 (74.34%), Postives = 138/152 (90.79%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]
BLAST of Pay0007888.1 vs. ExPASy Swiss-Prot
Match: Q90YQ5 (40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 112/152 (73.68%), Postives = 138/152 (90.79%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D++KRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct: 121 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]
BLAST of Pay0007888.1 vs. ExPASy TrEMBL
Match: A0A0A0K7Z7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. ExPASy TrEMBL
Match: A0A1S3CH47 (40S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. ExPASy TrEMBL
Match: A0A5A7UWI6 (40S ribosomal protein S18 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00290 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 23  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 82

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 83  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 142

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 143 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 174

[Close]
BLAST of Pay0007888.1 vs. ExPASy TrEMBL
Match: A0A5D3BZG0 (40S ribosomal protein S18 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001270 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 28  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 87

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 88  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 147

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 148 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 179

[Close]
BLAST of Pay0007888.1 vs. ExPASy TrEMBL
Match: B9SEC1 (40S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.7e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. NCBI nr
Match: XP_004139687.1 (40S ribosomal protein S18 [Cucumis sativus] >XP_004140957.2 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_008461916.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_038884290.1 40S ribosomal protein S18 [Benincasa hispida] >XP_038896640.1 40S ribosomal protein S18 [Benincasa hispida] >KGN44457.1 hypothetical protein Csa_016630 [Cucumis sativus])

HSP 1 Score: 304.3 bits (778), Expect = 5.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. NCBI nr
Match: KAA0059528.1 (40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa] >TYK14112.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 5.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 23  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 82

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 83  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 142

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 143 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 174

[Close]
BLAST of Pay0007888.1 vs. NCBI nr
Match: KAA0046827.1 (40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa] >TYK04510.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 5.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 28  MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 87

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 88  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 147

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 148 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 179

[Close]
BLAST of Pay0007888.1 vs. NCBI nr
Match: XP_002524340.1 (40S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal protein S18 [Manihot esculenta] >XP_021689482.1 40S ribosomal protein S18 [Hevea brasiliensis] >XP_031251561.1 40S ribosomal protein S18-like [Pistacia vera] >XP_031258282.1 40S ribosomal protein S18-like [Pistacia vera] >EEF38080.1 40S ribosomal protein S18, putative [Ricinus communis] >OAY58510.1 hypothetical protein MANES_02G183300v8 [Manihot esculenta])

HSP 1 Score: 303.9 bits (777), Expect = 7.7e-79
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. NCBI nr
Match: XP_021902783.1 (40S ribosomal protein S18 isoform X1 [Carica papaya])

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-78
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKG+GRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]
BLAST of Pay0007888.1 vs. TAIR 10
Match: AT4G09800.1 (S18 ribosomal protein )

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153
           RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct: 121 RGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

The following BLAST results are available for this feature:
BLAST of Pay0007888.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P347882.1e-7996.0540S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1[more]
Q8ISP04.6e-6677.6340S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1[more]
Q8IT985.1e-6575.6640S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1[more]
Q8JGS92.8e-6374.3440S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1[more]
Q90YQ51.1e-6273.6840S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1[more]
BLAST of Pay0007888.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7Z72.9e-79100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1[more]
A0A1S3CH472.9e-79100.0040S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1[more]
A0A5A7UWI62.9e-79100.0040S ribosomal protein S18 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BZG02.9e-79100.0040S ribosomal protein S18 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
B9SEC13.7e-7999.3440S ribosomal protein S18, putative OS=Ricinus communis OX=3988 GN=RCOM_0961900 ... [more]
BLAST of Pay0007888.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139687.15.9e-79100.0040S ribosomal protein S18 [Cucumis sativus] >XP_004140957.2 40S ribosomal protei... [more]
KAA0059528.15.9e-79100.0040S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa] >TYK14112.1 40S ... [more]
KAA0046827.15.9e-79100.0040S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa] >TYK04510.1 40S ... [more]
XP_002524340.17.7e-7999.3440S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal prote... [more]
XP_021902783.11.0e-7898.6840S ribosomal protein S18 isoform X1 [Carica papaya][more]
BLAST of Pay0007888.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22780.11.5e-8096.05Ribosomal protein S13/S18 family [more]
AT1G34030.11.5e-8096.05Ribosomal protein S13/S18 family [more]
AT4G09800.11.5e-8096.05S18 ribosomal protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 92..142
e-value: 1.4E-28
score: 100.4
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 14..142
e-value: 4.1E-57
score: 192.1
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 4..152
e-value: 1.9E-40
score: 135.8
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 12..152
score: 22.776844
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 15..145
score: 34.840778
NoneNo IPR availableGENE3D1.10.8.50coord: 1..80
e-value: 1.2E-35
score: 123.6
NoneNo IPR availablePANTHERPTHR10871:SF340S RIBOSOMAL PROTEIN S18-RELATEDcoord: 1..152
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..152
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 121..134
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 13..152

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Pay0007888Pay0007888gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0007888.1-exonPay0007888.1-exon-chr01:8977092..8977762exon
Pay0007888.1-exonPay0007888.1-exon-chr01:8977887..8978075exon
Pay0007888.1-exonPay0007888.1-exon-chr01:8979505..8979665exon
Pay0007888.1-exonPay0007888.1-exon-chr01:8979791..8979994exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0007888.1-three_prime_utrPay0007888.1-three_prime_utr-chr01:8977092..8977656three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0007888.1-cdsPay0007888.1-cds-chr01:8977657..8977762CDS
Pay0007888.1-cdsPay0007888.1-cds-chr01:8977887..8978075CDS
Pay0007888.1-cdsPay0007888.1-cds-chr01:8979505..8979665CDS
Pay0007888.1-cdsPay0007888.1-cds-chr01:8979791..8979793CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Pay0007888.1-five_prime_utrPay0007888.1-five_prime_utr-chr01:8979794..8979994five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Pay0007888.1Pay0007888.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome