Pay0005894.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0005894.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	COBRA-like protein
Location	chr12: 26647848 .. 26648240 (+)
Sequence length	393
RNA-Seq Expression	Pay0005894.1
Synteny	Pay0005894.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCGAGTTCCACGTTTACAGAAACTATACCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCTGGTGCTCCTTATAACAAACAGGCAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAGGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACGGTTGGTCGTTCCGGTAGTTCAAATAATACAGTGAGACTTCCCAAGAATTTCACCTTGAATGGTCCAGGGCTGGGTTACACGTGTAGCCAGGCAAAGATTGTGCCGCCATCAGCTTTCTATTCATCTGATGGTCGTCGAAGAACTAATGCATTGAGTAAATATCACAACTACACCAAACTATAA

mRNA sequence

ATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCGAGTTCCACGTTTACAGAAACTATACCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCTGGTGCTCCTTATAACAAACAGGCAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAGGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACGGTTGGTCGTTCCGGTAGTTCAAATAATACAGTGAGACTTCCCAAGAATTTCACCTTGAATGGTCCAGGGCTGGGTTACACGTGTAGCCAGGCAAAGATTGTGCCGCCATCAGCTTTCTATTCATCTGATGGTCGTCGAAGAACTAATGCATTGAGTAAATATCACAACTACACCAAACTATAA

Coding sequence (CDS)

ATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCGAGTTCCACGTTTACAGAAACTATACCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCTGGTGCTCCTTATAACAAACAGGCAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAGGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACGGTTGGTCGTTCCGGTAGTTCAAATAATACAGTGAGACTTCCCAAGAATTTCACCTTGAATGGTCCAGGGCTGGGTTACACGTGTAGCCAGGCAAAGATTGTGCCGCCATCAGCTTTCTATTCATCTGATGGTCGTCGAAGAACTAATGCATTGAGTAAATATCACAACTACACCAAACTATAA

Protein sequence

MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNALSKYHNYTKL

Homology

[Close]

BLAST of Pay0005894.1 vs. ExPASy Swiss-Prot
Match: Q9SRT7 (COBRA-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=COBL1 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.3e-41
Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M G + T+QGDCS   F  TIPH CK+ PSVVDLLPG+PYN+Q A CC+GGVL SW QDP
Sbjct: 92  MNGGQTTEQGDCSK--FKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDP 151

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           ++AVSAFQLTVG++G++N TVR+PKNFTL  PG GYTCS AKIV P+ F  +D RR T A
Sbjct: 152 ATAVSAFQLTVGQAGTTNKTVRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQA 211

Query: 121 LSKYH 126
           L  ++
Sbjct: 212 LMTWN 214

[Close]

BLAST of Pay0005894.1 vs. ExPASy Swiss-Prot
Match: Q6Z4G8 (COBRA-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-40
Identity = 73/120 (60.83%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M G +AT+QGDCS   F   IPH CK+DP +VDLLPG PYN Q A CCKGGVL SW QDP
Sbjct: 87  MNGGQATEQGDCSK--FKSNIPHCCKKDPEIVDLLPGTPYNMQIANCCKGGVLNSWAQDP 146

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           ++A+++FQ++VG++G++N TVR+P+NFTL  PG GYTC  AK+V P+ F+S DGRR T A
Sbjct: 147 ANAIASFQVSVGQAGTTNKTVRVPRNFTLKSPGPGYTCGSAKVVRPTKFFSQDGRRTTQA 204

[Close]

BLAST of Pay0005894.1 vs. ExPASy Swiss-Prot
Match: Q9LFW3 (COBRA-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=COBL4 PE=2 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 6.9e-39
Identity = 74/125 (59.20%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M GA+ T+QGDCS   F   +PH CK+ P+VVDLLPG PYN+Q + CCKGGV+ +WGQDP
Sbjct: 79  MVGAQTTEQGDCSK--FKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDP 138

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           S+AVS FQ++ G +G++N TV+LPKNFTL GPG GYTC  AKIVP + F ++D RR+T A
Sbjct: 139 SAAVSQFQVSAGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQA 198

Query: 121 LSKYH 126
           L  ++
Sbjct: 199 LMTWN 201

[Close]

BLAST of Pay0005894.1 vs. ExPASy Swiss-Prot
Match: Q6Z4G7 (COBRA-like protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L7 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-38
Identity = 73/125 (58.40%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M GA+ATDQGDC  S F   +PH C+R P+VVDLLPG PYN+Q A CC+GGVL ++GQ P
Sbjct: 80  MVGAQATDQGDC--SRFKANLPHCCRRTPAVVDLLPGVPYNQQIANCCRGGVLPAYGQAP 139

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           S+A +AFQ++VG++G++N TVRLP+NFTL GPG GYTC +A++VP + F ++D RR+T A
Sbjct: 140 SAAAAAFQVSVGQAGTTNRTVRLPRNFTLLGPGPGYTCGRARVVPSTVFLTADRRRKTQA 199

Query: 121 LSKYH 126
           L  ++
Sbjct: 200 LMTWN 202

[Close]

BLAST of Pay0005894.1 vs. ExPASy Swiss-Prot
Match: Q94KT8 (Protein COBRA OS=Arabidopsis thaliana OX=3702 GN=COB PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-38
Identity = 73/125 (58.40%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M GA+ T+QGDCS   +   IPH CK+DP+VVDLLPG PYN+Q A CCKGGV+ SW QDP
Sbjct: 95  MVGAQTTEQGDCSK--YKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDP 154

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           ++A S+FQ++VG +G++N TVR+P+NFTL GPG GYTC  AKIV P+ F ++D RR T A
Sbjct: 155 ATAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQA 214

Query: 121 LSKYH 126
           +  ++
Sbjct: 215 MMTWN 217

[Close]

BLAST of Pay0005894.1 vs. ExPASy TrEMBL
Match: A0A5D3BI42 (COBRA-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001540 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP
Sbjct: 84  MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 143

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA
Sbjct: 144 SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 203

Query: 121 L 122
           L
Sbjct: 204 L 204

[Close]

BLAST of Pay0005894.1 vs. ExPASy TrEMBL
Match: A0A1S3BDU4 (COBRA-like protein OS=Cucumis melo OX=3656 GN=LOC103488801 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP
Sbjct: 54  MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 113

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA
Sbjct: 114 SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 173

Query: 121 L 122
           L
Sbjct: 174 L 174

[Close]

BLAST of Pay0005894.1 vs. ExPASy TrEMBL
Match: A0A0A0LTJ2 (COBRA-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G039860 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.3e-60
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEATDQGDCSSSTFT TIPHSCKRDPSVVDLLPGAPYN+Q AMCCKGGVLTSWGQDP
Sbjct: 84  MQGAEATDQGDCSSSTFTGTIPHSCKRDPSVVDLLPGAPYNRQVAMCCKGGVLTSWGQDP 143

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVG SGSSN TVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRR+TNA
Sbjct: 144 SSAVSAFQLTVGHSGSSNKTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRKTNA 203

Query: 121 LSKYH 126
           L  ++
Sbjct: 204 LMTWN 208

[Close]

BLAST of Pay0005894.1 vs. ExPASy TrEMBL
Match: A0A6J1KKI4 (COBRA-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495398 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 99/120 (82.50%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEA DQGDC  STFTET+PHSCKRDP VVDLLP APYN+Q A CCKGGVLTSWGQDP
Sbjct: 82  MQGAEAADQGDC--STFTETMPHSCKRDPLVVDLLPDAPYNQQVARCCKGGVLTSWGQDP 141

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVG SG+SN TVRLPKNFT  GPG GYTCS  KI P SAFYSSDGRR+T A
Sbjct: 142 SSAVSAFQLTVGHSGNSNKTVRLPKNFTFYGPGRGYTCSHPKIAPNSAFYSSDGRRKTYA 199

[Close]

BLAST of Pay0005894.1 vs. ExPASy TrEMBL
Match: A0A6J1E796 (COBRA-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431272 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.0e-48
Identity = 96/120 (80.00%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           +QGAEA DQGDC  STFTET+PHSCKRDP VVDLLPG PYN+Q A CCKGGVLTSWGQDP
Sbjct: 82  IQGAEAVDQGDC--STFTETMPHSCKRDPLVVDLLPGTPYNQQVARCCKGGVLTSWGQDP 141

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVS+FQ TVG SG+SN TVRLPKNFT +GPG GYTCS  KI P SAFYSSDGRR+T A
Sbjct: 142 SSAVSSFQFTVGHSGNSNKTVRLPKNFTFHGPGRGYTCSPPKIAPNSAFYSSDGRRKTYA 199

[Close]

BLAST of Pay0005894.1 vs. NCBI nr
Match: TYJ98953.1 (COBRA-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 5.1e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP
Sbjct: 84  MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 143

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA
Sbjct: 144 SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 203

Query: 121 L 122
           L
Sbjct: 204 L 204

[Close]

BLAST of Pay0005894.1 vs. NCBI nr
Match: XP_008445923.2 (PREDICTED: COBRA-like protein 4, partial [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 5.1e-63
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP
Sbjct: 54  MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 113

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA
Sbjct: 114 SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 173

Query: 121 L 122
           L
Sbjct: 174 L 174

[Close]

BLAST of Pay0005894.1 vs. NCBI nr
Match: XP_031738829.1 (COBRA-like protein 4 [Cucumis sativus] >KGN64072.1 hypothetical protein Csa_014263 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 9.0e-60
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEATDQGDCSSSTFT TIPHSCKRDPSVVDLLPGAPYN+Q AMCCKGGVLTSWGQDP
Sbjct: 84  MQGAEATDQGDCSSSTFTGTIPHSCKRDPSVVDLLPGAPYNRQVAMCCKGGVLTSWGQDP 143

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVG SGSSN TVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRR+TNA
Sbjct: 144 SSAVSAFQLTVGHSGSSNKTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRKTNA 203

Query: 121 LSKYH 126
           L  ++
Sbjct: 204 LMTWN 208

[Close]

BLAST of Pay0005894.1 vs. NCBI nr
Match: XP_038895535.1 (COBRA-like protein 4 [Benincasa hispida])

HSP 1 Score: 228.0 bits (580), Expect = 4.6e-56
Identity = 111/125 (88.80%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEATDQGDC  STFTET+PHSCKRDPSVVDLLPGAPYNKQ AMCCKGG LTSWGQDP
Sbjct: 84  MQGAEATDQGDC--STFTETMPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGALTSWGQDP 143

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVGRSGSSN TVRLPKNFTL GPGLGYTCSQAKI P SAFYSSDGRR+TNA
Sbjct: 144 SSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPGLGYTCSQAKIAPSSAFYSSDGRRKTNA 203

Query: 121 LSKYH 126
           L  ++
Sbjct: 204 LMTWN 206

[Close]

BLAST of Pay0005894.1 vs. NCBI nr
Match: KAG6584396.1 (COBRA-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.5 bits (519), Expect = 5.5e-49
Identity = 99/120 (82.50%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           MQGAEA DQGDC  STFTET+PHSCKRDP VVDLLPG PYN+Q A CCKGGVLTSWGQDP
Sbjct: 82  MQGAEAVDQGDC--STFTETMPHSCKRDPLVVDLLPGTPYNQQVARCCKGGVLTSWGQDP 141

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           SSAVSAFQLTVG SG+SN TVRLPKNFT +GPG GYTCS  KI P SAFYSSDGRR+T A
Sbjct: 142 SSAVSAFQLTVGHSGNSNKTVRLPKNFTFHGPGRGYTCSPPKIAPNSAFYSSDGRRKTYA 199

[Close]

BLAST of Pay0005894.1 vs. TAIR 10
Match: AT3G02210.1 (COBRA-like protein 1 precursor )

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-42
Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M G + T+QGDCS   F  TIPH CK+ PSVVDLLPG+PYN+Q A CC+GGVL SW QDP
Sbjct: 92  MNGGQTTEQGDCSK--FKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDP 151

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           ++AVSAFQLTVG++G++N TVR+PKNFTL  PG GYTCS AKIV P+ F  +D RR T A
Sbjct: 152 ATAVSAFQLTVGQAGTTNKTVRVPKNFTLKAPGPGYTCSPAKIVKPTRFIGTDKRRVTQA 211

Query: 121 LSKYH 126
           L  ++
Sbjct: 212 LMTWN 214

[Close]

BLAST of Pay0005894.1 vs. TAIR 10
Match: AT5G15630.1 (COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family )

HSP 1 Score: 161.4 bits (407), Expect = 4.9e-40
Identity = 74/125 (59.20%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M GA+ T+QGDCS   F   +PH CK+ P+VVDLLPG PYN+Q + CCKGGV+ +WGQDP
Sbjct: 79  MVGAQTTEQGDCSK--FKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDP 138

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           S+AVS FQ++ G +G++N TV+LPKNFTL GPG GYTC  AKIVP + F ++D RR+T A
Sbjct: 139 SAAVSQFQVSAGLAGTTNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTVFLTTDKRRKTQA 198

Query: 121 LSKYH 126
           L  ++
Sbjct: 199 LMTWN 201

[Close]

BLAST of Pay0005894.1 vs. TAIR 10
Match: AT5G60920.1 (COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family )

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-39
Identity = 73/125 (58.40%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M GA+ T+QGDCS   +   IPH CK+DP+VVDLLPG PYN+Q A CCKGGV+ SW QDP
Sbjct: 95  MVGAQTTEQGDCSK--YKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDP 154

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           ++A S+FQ++VG +G++N TVR+P+NFTL GPG GYTC  AKIV P+ F ++D RR T A
Sbjct: 155 ATAASSFQISVGAAGTTNKTVRVPRNFTLMGPGPGYTCGPAKIVRPTKFVTTDTRRTTQA 214

Query: 121 LSKYH 126
           +  ++
Sbjct: 215 MMTWN 217

[Close]

BLAST of Pay0005894.1 vs. TAIR 10
Match: AT3G29810.1 (COBRA-like protein 2 precursor )

HSP 1 Score: 157.5 bits (397), Expect = 7.1e-39
Identity = 69/121 (57.02%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M G +AT+QGDCS   F   IPH CK+ P++VDLLPG PYN+Q + CC+GGV+++W QDP
Sbjct: 87  MVGGQATEQGDCSK--FKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDP 146

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           ++A+S+FQ++VG+SG++N TVR P+N TL  PG GYTC  AK+V PS F S+D RR+T +
Sbjct: 147 ATAISSFQISVGQSGTTNTTVRAPRNITLKAPGPGYTCGPAKLVKPSRFISADKRRKTQS 205

Query: 121 L 122
           L
Sbjct: 207 L 205

[Close]

BLAST of Pay0005894.1 vs. TAIR 10
Match: AT1G09790.1 (COBRA-like protein 6 precursor )

HSP 1 Score: 117.9 bits (294), Expect = 6.3e-27
Identity = 58/124 (46.77%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 1   MQGAEATDQGDCSSSTFTETIPHSCKRDPSVVDLLPGAPYNKQAAMCCKGGVLTSWGQDP 60
           M+GAE T+QG+CS+   +  +PH C   P++VDLLPGA  N Q A CC+GGVLTS  QD 
Sbjct: 94  MKGAETTEQGNCSAFASSGNLPHCCLERPTIVDLLPGASLNVQVANCCRGGVLTSMSQDH 153

Query: 61  SSAVSAFQLTVGRSGSSNNTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRRTNA 120
           ++ VSAF +TVG S        +P NF +  P  GY+C  A  V P+ F +  GRR+T A
Sbjct: 154 ANHVSAFHMTVGSSPDGPEEFNMPSNFDIGVP--GYSCDNATSVSPTKFSTDKGRRKTQA 213

Query: 121 LSKY 125
           L+ +
Sbjct: 214 LATW 215

The following BLAST results are available for this feature:

BLAST of Pay0005894.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRT7	3.3e-41	64.00	COBRA-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=COBL1 PE=2 SV=1	[more]
Q6Z4G8	1.7e-40	60.83	COBRA-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L6 PE=2 SV=1	[more]
Q9LFW3	6.9e-39	59.20	COBRA-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=COBL4 PE=2 SV=2	[more]
Q6Z4G7	1.2e-38	58.40	COBRA-like protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L7 PE=3 SV=1	[more]
Q94KT8	1.5e-38	58.40	Protein COBRA OS=Arabidopsis thaliana OX=3702 GN=COB PE=2 SV=1	[more]

BLAST of Pay0005894.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI42	2.5e-63	100.00	COBRA-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G0...	[more]
A0A1S3BDU4	2.5e-63	100.00	COBRA-like protein OS=Cucumis melo OX=3656 GN=LOC103488801 PE=3 SV=1	[more]
A0A0A0LTJ2	4.3e-60	92.00	COBRA-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G039860 PE=3 SV=1	[more]
A0A6J1KKI4	1.0e-48	82.50	COBRA-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495398 PE=3 SV=1	[more]
A0A6J1E796	5.0e-48	80.00	COBRA-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431272 PE=3 SV=1	[more]

BLAST of Pay0005894.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98953.1	5.1e-63	100.00	COBRA-like protein 4 [Cucumis melo var. makuwa]	[more]
XP_008445923.2	5.1e-63	100.00	PREDICTED: COBRA-like protein 4, partial [Cucumis melo]	[more]
XP_031738829.1	9.0e-60	92.00	COBRA-like protein 4 [Cucumis sativus] >KGN64072.1 hypothetical protein Csa_0142...	[more]
XP_038895535.1	4.6e-56	88.80	COBRA-like protein 4 [Benincasa hispida]	[more]
KAG6584396.1	5.5e-49	82.50	COBRA-like protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Pay0005894.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02210.1	2.4e-42	64.00	COBRA-like protein 1 precursor	[more]
AT5G15630.1	4.9e-40	59.20	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family	[more]
AT5G60920.1	1.1e-39	58.40	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family	[more]
AT3G29810.1	7.1e-39	57.02	COBRA-like protein 2 precursor	[more]
AT1G09790.1	6.3e-27	46.77	COBRA-like protein 6 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006918	COBRA, plant	PFAM	PF04833	COBRA	coord: 1..124 e-value: 5.8E-41 score: 140.1
IPR006918	COBRA, plant	PANTHER	PTHR31673	PROTEIN COBRA	coord: 1..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31673:SF27	COBRA-LIKE PROTEIN	coord: 1..124

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0005894	Pay0005894	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0005894.1-cds	Pay0005894.1-cds-chr12:26647848..26648240	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0005894.1-exon	Pay0005894.1-exon-chr12:26647848..26648240	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0005894.1	Pay0005894.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010215	cellulose microfibril organization
biological_process	GO:0080009	mRNA methylation
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus