Pay0004831.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0004831.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr09: 3545613 .. 3549188 (-)
Sequence length	744
RNA-Seq Expression	Pay0004831.1
Synteny	Pay0004831.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGAACTCTGAAGAAGACTTATTGGTCGCCTGGTATGAAGCGAGAGATAGTTGAATATGTCGATAGATGTTCGATCTGTCAACAGGTTAAAACAGTGAGGCAAAGGCCAGAAGGACTCCTTAACCCCATGTCAGTGCCAGAGTGGAAGTGGGAGCATATTACCATGGATTTTCTGTTTGGATTACCCCGTACATCTAGAGGATATGATGGTATATGGGTAATAGTAGATAGACTCACCAAGACAGCGTAGTTTATACCGATTAAAGTGACGTCTACACTAGATCAGCTAGCTAAGTTATACGTTGACAGGATTGTGAGTCAACATGGAGTGCCAGTGTCCATAGTTTCAGATAGGGACCCGAGGTTTACTTCTAAGTTTTGGCCTAGTGTGCAAAAAGCAACGGGAACAAAGTTGAAGTTCAGTACCGCGTTCCATCCCAAAACAGATGGTTAGTCAGAGAGGACCATCCAGACCTTAGAAGACATGTTGAGAGCATGCGTCCTTCAATTTAAGGGAAATTGGGATACCCACTTATCACTTATGGAGTTCACTTATAATAACAGCTACCAGTCTAGTATCGGCATGGCACCATTTGAAGCTTTGTATGGCAGACCATACAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAACGAAAGCTAATTGGTCCTGAGTTAGTACAAGTTACGTCAGACAATATTAAGCTGATTTGGGAAAATCTAAAAATAGCTCAGGATCGACAGAAGAGCTATGCAGATAAGCGACGAAGAGATTTAGAGTTCCAGATTGGAGAACAAGTTTTCTTAAAGTTATCTTCGTGCAGGGGTGTTCTTCATTTTGGGAGGAAAGGTAAGTTGAGTCCTAGATATATTGGTCCGTACCAGATAATAGAACGAGTTGGACCAACAGCCTATAGACTTGAATTGCCAACGGAACTCGCTCGAATACGTGATGTTTTTCATGTGTCCATGTTGAGGAAATATATTTCAGATCCATCACATGTGTTGAAAGTACAACCAATTGAACTGAAAGAAGACTTGAGTTATAGAGAGGAAGCACTTCAGATCCTCGACAGGAAGAAGCAAGTGTTGAGGAACAAAACGATCCGGCTCATGAAAGTTCTTTGGAGACATCATGGAATAGAGGAGGCAACCTAGGAGTCAGAAGATCAAATGAGGAGGAGTTACCCGACACTCTTCACCTAAGGACTTCTAAATTTCGAGGACGAAATTTCATAAGGGAGAGGTAAGTTGTAAACCCGCGATTTCCCTAGGATCATTTTCTCTTGTCATCATAGTTGGGATTACTAAGCTAAAAGGAGAAAAAAAAGAGAGAAAAGAAAGGATGTGGAGAGAGTGAAGGAAGAAGAAGAAGAATTTCGTTAATTGAGGTTGAAGAGGATAGGAAAAAGTTCGTGCAAAGCCAGCCATTGTAGAATTTGGGTGCAACTGTCAACCTCTGGTTGTTTTGTTAGGTTTGAGCTATCTAGAAGGAACTAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCTAATAAATTTCATGAAGGAAGCTTGAGCTGAATAGTATGAGAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATTTCTGGTGTTCTCTGATGCTTTGAGTATTCTGAAAGTGCACAAGTCGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATATCCTACAACTTTCATGAAGATTTTGTGAGCCAAAAATGACTTTAAGTGGGGTTAATTGCAGGAGATAGATAAGGAGTGGTAGAGAACCTCGAATTCTGTATTGTCTGTGTTCGGGGCAATTCTGGACGAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAATGAAGATTTTTATGTGTATTTCATTAATTTTGGTTAAGTTTTGAGGAAGTTATGGGTGTTGGAAGTTAGGATATCGAATCTGGAAAATCTGGAAATGTGGGTTGTAATGTGATTCTTAATCTAATTGTTTAGAAATTCATGAGCATGGAAGGACAAAAGCTTTCTAATGCTCGGTTTTGGTTGTCGACAGGCCAAGAGGAAATAGGCCGAGTCTACAAACCAGGGAACTAGATAAGACTGTGAGTGACAAAACAATTTCTAAAATGTTATTAAACAATTATTCATAATTACATGTTTTACATGTTTTTCTATGAATGATACATGTTTTTGTAAACGGTTTCAAACATGAGTTTTAAGCTTAGATTTCCTAATGAGGGTTATATTCGAGCACGTGGCTAATGGCTTAATGAAAAGTAGTTGAAACGATATCTTTTAAAGTAAAGCATGTGTTAGCAAATATTGTATAATGATTTAAAGTTTTTCACGAGCAAACTGAATAAACTTGAGTTTTACAAAAGATAACGATAAACAGGCATGTTTAAATGTTTTCATGTGACTTCGCGGAGCTTTCCATTGATTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGTTGGGTGGGCCCACTACGACAAGGACGATGGGAGTGTCGAGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACCACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGTTATGCTTTGTTAGATTTTTTTTATGATGAACTTGGAAGATATTTTAGGAAACCTTATTTATTACACATTTATGTTAAATGCTTTGTTTGAGCATATTTATATGTCTAAAGGTTTATCACATGTTCTGACATCCAGATTTAGAGTTTTAAATTTAGTCACTCACTGGGCCTCGTAGCTCATTCTTTTCAAAATGTTTCCCACTTTTCAGGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTTCGGATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTCTGTTCATGTTGAAATGTTTTGTAAGGTTTGTATAATATCGTCTTAGAGGTCGTGGTCATAAAACTCTAGTTGTATAGGTTTTGGTCGTGATGTTTATATCAGGTTATTTTACAAACCAAGTGATGTCAGGGCTGCATCTTATGTATGTTGGGAAGGTTTTCGTGGTTTCCTCTGTGTGGTGTTCCATGTTGAATATTCTAAACCTAAGATTGGTATGTTTATCGGGCTTAACGTTCAGTAGGGTCAGCAGGGATCGTTAGAGGAGACGATGTCCGTTGGCTTCACGCCGTCTTTCGGGCTAAAACAACAGGCGGTCTGGGAGGGGGTGTGACACAGTCGAATTAAGCTAGTCCAGACTAATTCCTAGAATATATCATCTCGAAACTCTTTTTAAAAGAGGAAAGCTAGAACTCATAATTCAATGTTGTAGATACGGATCGATGTAGCTAACGCTAGTAGGGGATAGGTACTCATTCGACTAAGTGGGAAAGGAGATTTCTAGCTTGACCTATGGTACAGCTCGGATAA

mRNA sequence

ATGTATAGAACTCTGAAGAAGACTTATTGGTCGCCTGGTATGAAGCGAGAGATAGTTGAATATGTCGATAGATGTTCGATCTGTCAACAGGTTAAAACAGTGAGGCAAAGGCCAGAAGGACTCCTTAACCCCATGTCAGTGCCAGAGTGGAAGTGGGAGCATATTACCATGGATTTTCTGTTTGGATTACCCCGTACATCTAGAGGATATGATGGTATATGGTTTATACCGATTAAAGTGACGTCTACACTAGATCAGCTAGCTAAGTTATACGTTGACAGGATTGTGAGTCAACATGGAGTGCCAGTACCATACAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAACGAAAGCTAATTGGTCCTGAGTTAGTACAAGTTACGTCAGACAATATTAAGCTGATTTGGGAAAATCTAAAAATAGCTCAGGATCGACAGAAGAGCTATGCAGATAAGCGACGAAGAGATTTAGAGTTCCAGATTGGAGAACAAGTTTTCTTAAAGTTATCTTCGTGCAGGGGTGTTCTTCATTTTGGGAGGAAAGATCCATCACATGTGTTGAAAGTACAACCAATTGAACTGAAAGAAGACTTGAGTTATAGAGAGGAAGCACTTCAGATCCTCGACAGGAAGAAGCAAAGCACAGGATTTTCGAGCAAACCAGGAGGATTTCTGGTGTTCTCTGATGCTTTGAGTATTCTGAAAGTGCACAAGTCGAATCAGAAGCTCTATTTGCTCGGATAA

Coding sequence (CDS)

ATGTATAGAACTCTGAAGAAGACTTATTGGTCGCCTGGTATGAAGCGAGAGATAGTTGAATATGTCGATAGATGTTCGATCTGTCAACAGGTTAAAACAGTGAGGCAAAGGCCAGAAGGACTCCTTAACCCCATGTCAGTGCCAGAGTGGAAGTGGGAGCATATTACCATGGATTTTCTGTTTGGATTACCCCGTACATCTAGAGGATATGATGGTATATGGTTTATACCGATTAAAGTGACGTCTACACTAGATCAGCTAGCTAAGTTATACGTTGACAGGATTGTGAGTCAACATGGAGTGCCAGTACCATACAGGACTCCTGTGTGCTGGAACGAAGTGGGAGAACGAAAGCTAATTGGTCCTGAGTTAGTACAAGTTACGTCAGACAATATTAAGCTGATTTGGGAAAATCTAAAAATAGCTCAGGATCGACAGAAGAGCTATGCAGATAAGCGACGAAGAGATTTAGAGTTCCAGATTGGAGAACAAGTTTTCTTAAAGTTATCTTCGTGCAGGGGTGTTCTTCATTTTGGGAGGAAAGATCCATCACATGTGTTGAAAGTACAACCAATTGAACTGAAAGAAGACTTGAGTTATAGAGAGGAAGCACTTCAGATCCTCGACAGGAAGAAGCAAAGCACAGGATTTTCGAGCAAACCAGGAGGATTTCTGGTGTTCTCTGATGCTTTGAGTATTCTGAAAGTGCACAAGTCGAATCAGAAGCTCTATTTGCTCGGATAA

Protein sequence

MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFLFGLPRTSRGYDGIWFIPIKVTSTLDQLAKLYVDRIVSQHGVPVPYRTPVCWNEVGERKLIGPELVQVTSDNIKLIWENLKIAQDRQKSYADKRRRDLEFQIGEQVFLKLSSCRGVLHFGRKDPSHVLKVQPIELKEDLSYREEALQILDRKKQSTGFSSKPGGFLVFSDALSILKVHKSNQKLYLLG

Homology

[Close]

BLAST of Pay0004831.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-10
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 9    YWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFLFGLPRTSR 68
            Y+ P ++  I++Y+  C  CQ +K+ R R  GLL P+ + E +W  I+MDF+ GLP TS 
Sbjct: 1126 YYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSN 1185

Query: 69   GYDGI-----------WFIPIKVTSTLDQLAKLYVDRIVSQHGVP 103
              + I            FI  + T    QL  L    I S HG P
Sbjct: 1186 NLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFP 1230

[Close]

BLAST of Pay0004831.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-10
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 9    YWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFLFGLPRTSR 68
            Y+ P ++  I++Y+  C  CQ +K+ R R  GLL P+ + E +W  I+MDF+ GLP TS 
Sbjct: 1152 YYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSN 1211

Query: 69   GYDGI-----------WFIPIKVTSTLDQLAKLYVDRIVSQHGVP 103
              + I            FI  + T    QL  L    I S HG P
Sbjct: 1212 NLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFP 1256

[Close]

BLAST of Pay0004831.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10
Identity = 33/109 (30.28%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 5    LKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFLFGLP 64
            L++  W  G++++I EYV  C  CQ  K+   +P G L P+   E  WE ++MDF+  LP
Sbjct: 938  LRRFTWK-GIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 997

Query: 65   RTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVP 103
             +S GY+ ++            +P   + T +Q A+++  R+++  G P
Sbjct: 998  ESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044

[Close]

BLAST of Pay0004831.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10
Identity = 33/109 (30.28%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 5    LKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFLFGLP 64
            L++  W  G++++I EYV  C  CQ  K+   +P G L P+   E  WE ++MDF+  LP
Sbjct: 938  LRRFTWK-GIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 997

Query: 65   RTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVP 103
             +S GY+ ++            +P   + T +Q A+++  R+++  G P
Sbjct: 998  ESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044

[Close]

BLAST of Pay0004831.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-10
Identity = 33/109 (30.28%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 5    LKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFLFGLP 64
            L++  W  G++++I EYV  C  CQ  K+   +P G L P+   E  WE ++MDF+  LP
Sbjct: 938  LRRFTWK-GIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 997

Query: 65   RTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVP 103
             +S GY+ ++            +P   + T +Q A+++  R+++  G P
Sbjct: 998  ESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044

[Close]

BLAST of Pay0004831.1 vs. ExPASy TrEMBL
Match: A0A1S3CAP1 (uncharacterized protein LOC103498328 OS=Cucumis melo OX=3656 GN=LOC103498328 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.9e-110
Identity = 206/256 (80.47%), Postives = 217/256 (84.77%), Query Frame = 0


Query: 1   MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
           MYRTLKKTYW PGMKREI EYVDRC ICQ VK VRQR  GLLNP+ +PEWKWEHIT+DFL
Sbjct: 1   MYRTLKKTYWWPGMKREIAEYVDRCLICQLVKPVRQRLGGLLNPLPMPEWKWEHITIDFL 60

Query: 61  FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPVPYRTPV 120
           FGLP TSRGYDGIW           FIPIK TSTLDQLAKLYVDRI +Q          V
Sbjct: 61  FGLPCTSRGYDGIWVIVDRLTKIARFIPIKATSTLDQLAKLYVDRITTQDS--------V 120

Query: 121 CWNEVGERKLIGPELVQVTSDNIKLIWENLKIAQDRQKSYADKRRRDLEFQIGEQVFLKL 180
           CWNEVGERKL+GPEL+QVT DNIKLI ENLKIAQDRQKSYADKRRRDLEFQIGEQVFLKL
Sbjct: 121 CWNEVGERKLVGPELLQVTLDNIKLIRENLKIAQDRQKSYADKRRRDLEFQIGEQVFLKL 180

Query: 181 SSCRGVLHFGRKDPSHVLKVQPIELKEDLSYREEALQILDRKKQSTGFSSKPGGFLVFSD 240
           S  RGVL FGRKDPSHVL+VQP ELKEDLSYREEA+QILDRK+QSTGFSSKPGGFLVFS+
Sbjct: 181 SPWRGVLRFGRKDPSHVLQVQPFELKEDLSYREEAVQILDRKEQSTGFSSKPGGFLVFSE 240

Query: 241 ALSILKVHKSNQKLYL 246
           ALSIL+V KSNQKLYL
Sbjct: 241 ALSILEVQKSNQKLYL 248

[Close]

BLAST of Pay0004831.1 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.2e-92
Identity = 183/263 (69.58%), Postives = 192/263 (73.00%), Query Frame = 0


Query: 1    MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
            MYRTLKKTYW PGMKR+I EYVDRC ICQQVK +RQRP GLLN + VPEWKW+HITMDFL
Sbjct: 1183 MYRTLKKTYWWPGMKRQIAEYVDRCLICQQVKPMRQRPGGLLNLLPVPEWKWKHITMDFL 1242

Query: 61   FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPVPY---- 120
            FGLPRTSRGYDGIW           FIPIK  STLDQLAKLYVDRIVSQHGVPV      
Sbjct: 1243 FGLPRTSRGYDGIWVIADRLTKTARFIPIKAMSTLDQLAKLYVDRIVSQHGVPVSIVSDR 1302

Query: 121  --RTPVCWNEVGERKLIGPELVQVTSDNIKLIWENLKIAQDRQKSYADKRRRDLEFQIGE 180
              RTPVCWNEVGERKL+ PELVQVTSDNIKLI ENLKIAQDRQKSY DKRRRDLEFQIGE
Sbjct: 1303 DPRTPVCWNEVGERKLVDPELVQVTSDNIKLIKENLKIAQDRQKSYVDKRRRDLEFQIGE 1362

Query: 181  QVFLKLSSCRGVLHFGRKDPSHVLKVQPIELKEDLSYREEALQILDRKKQSTGFSSKPGG 240
            QVFLKLSS RGVL F RK+                                   SSKPGG
Sbjct: 1363 QVFLKLSSWRGVLRFERKEHR--------------------------------ISSKPGG 1413

Query: 241  FLVFSDALSILKVHKSNQKLYLL 247
            F+VF D LSIL+VHKSNQKLYL+
Sbjct: 1423 FMVFYDTLSILEVHKSNQKLYLV 1413

[Close]

BLAST of Pay0004831.1 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.2e-92
Identity = 183/263 (69.58%), Postives = 192/263 (73.00%), Query Frame = 0


Query: 1    MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
            MYRTLKKTYW PGMKR+I EYVDRC ICQQVK +RQRP GLLN + VPEWKW+HITMDFL
Sbjct: 1183 MYRTLKKTYWWPGMKRQIAEYVDRCLICQQVKPMRQRPGGLLNLLPVPEWKWKHITMDFL 1242

Query: 61   FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPVPY---- 120
            FGLPRTSRGYDGIW           FIPIK  STLDQLAKLYVDRIVSQHGVPV      
Sbjct: 1243 FGLPRTSRGYDGIWVIADRLTKTARFIPIKAMSTLDQLAKLYVDRIVSQHGVPVSIVSDR 1302

Query: 121  --RTPVCWNEVGERKLIGPELVQVTSDNIKLIWENLKIAQDRQKSYADKRRRDLEFQIGE 180
              RTPVCWNEVGERKL+ PELVQVTSDNIKLI ENLKIAQDRQKSY DKRRRDLEFQIGE
Sbjct: 1303 DPRTPVCWNEVGERKLVDPELVQVTSDNIKLIKENLKIAQDRQKSYVDKRRRDLEFQIGE 1362

Query: 181  QVFLKLSSCRGVLHFGRKDPSHVLKVQPIELKEDLSYREEALQILDRKKQSTGFSSKPGG 240
            QVFLKLSS RGVL F RK+                                   SSKPGG
Sbjct: 1363 QVFLKLSSWRGVLRFERKEHR--------------------------------ISSKPGG 1413

Query: 241  FLVFSDALSILKVHKSNQKLYLL 247
            F+VF D LSIL+VHKSNQKLYL+
Sbjct: 1423 FMVFYDTLSILEVHKSNQKLYLV 1413

[Close]

BLAST of Pay0004831.1 vs. ExPASy TrEMBL
Match: A0A5A7VI06 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00360 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.0e-86
Identity = 191/363 (52.62%), Postives = 198/363 (54.55%), Query Frame = 0


Query: 1   MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
           MYRTLKKTYW PGMKREI EYVDRC ICQQVK VRQRP GLLNP+ VPEWKWEHITMDFL
Sbjct: 91  MYRTLKKTYWWPGMKREIAEYVDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFL 150

Query: 61  FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPV------ 120
           FGLPRTSRG+DGIW           FIPIK TSTLDQL KLYVDRIVSQHGV +      
Sbjct: 151 FGLPRTSRGFDGIWVIVDRLTKTAQFIPIKATSTLDQLVKLYVDRIVSQHGVLMSIVSDR 210

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 211 DPRFTSKFWPSVQKAMGTKLKFSTAFHPLTDGQSERTIQTLEDMLRACVLQFKGNWDTHL 270

Query: 181 --------------------------PYRTPVCWNEVGERKLIGPELVQVTSDNIKLIWE 214
                                     P RTPVCWNEVGERKL+GPELVQVTSDNIKLI E
Sbjct: 271 SLMEFAYNNNYQSSIDMTLFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNIKLIKE 330

[Close]

BLAST of Pay0004831.1 vs. ExPASy TrEMBL
Match: A0A5A7TDR2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00110 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 7.4e-85
Identity = 174/316 (55.06%), Postives = 195/316 (61.71%), Query Frame = 0


Query: 1    MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
            MYRTLKKTYW  GMK+EI EYVDRC ICQQVK VRQRP G LNP+ VPEWKWEHITMDFL
Sbjct: 1604 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 1663

Query: 61   FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPV------ 120
            FGLPRTS G+DGIW           FIPIK+TSTLDQLA+LYVD+IVSQ+GVPV      
Sbjct: 1664 FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 1723

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 1724 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 1783

Query: 181  --------------------------PYRTPVCWNEVGERKLIGPELVQVTSDNIKLIWE 214
                                      P RTPVCWNEVGERKL+GPELVQ+T++NIKLI E
Sbjct: 1784 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 1843

[Close]

BLAST of Pay0004831.1 vs. NCBI nr
Match: XP_008459128.1 (PREDICTED: uncharacterized protein LOC103498328 [Cucumis melo])

HSP 1 Score: 407.5 bits (1046), Expect = 8.1e-110
Identity = 206/256 (80.47%), Postives = 217/256 (84.77%), Query Frame = 0


Query: 1   MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
           MYRTLKKTYW PGMKREI EYVDRC ICQ VK VRQR  GLLNP+ +PEWKWEHIT+DFL
Sbjct: 1   MYRTLKKTYWWPGMKREIAEYVDRCLICQLVKPVRQRLGGLLNPLPMPEWKWEHITIDFL 60

Query: 61  FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPVPYRTPV 120
           FGLP TSRGYDGIW           FIPIK TSTLDQLAKLYVDRI +Q          V
Sbjct: 61  FGLPCTSRGYDGIWVIVDRLTKIARFIPIKATSTLDQLAKLYVDRITTQDS--------V 120

Query: 121 CWNEVGERKLIGPELVQVTSDNIKLIWENLKIAQDRQKSYADKRRRDLEFQIGEQVFLKL 180
           CWNEVGERKL+GPEL+QVT DNIKLI ENLKIAQDRQKSYADKRRRDLEFQIGEQVFLKL
Sbjct: 121 CWNEVGERKLVGPELLQVTLDNIKLIRENLKIAQDRQKSYADKRRRDLEFQIGEQVFLKL 180

Query: 181 SSCRGVLHFGRKDPSHVLKVQPIELKEDLSYREEALQILDRKKQSTGFSSKPGGFLVFSD 240
           S  RGVL FGRKDPSHVL+VQP ELKEDLSYREEA+QILDRK+QSTGFSSKPGGFLVFS+
Sbjct: 181 SPWRGVLRFGRKDPSHVLQVQPFELKEDLSYREEAVQILDRKEQSTGFSSKPGGFLVFSE 240

Query: 241 ALSILKVHKSNQKLYL 246
           ALSIL+V KSNQKLYL
Sbjct: 241 ALSILEVQKSNQKLYL 248

[Close]

BLAST of Pay0004831.1 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 4.4e-92
Identity = 183/263 (69.58%), Postives = 192/263 (73.00%), Query Frame = 0


Query: 1    MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
            MYRTLKKTYW PGMKR+I EYVDRC ICQQVK +RQRP GLLN + VPEWKW+HITMDFL
Sbjct: 1183 MYRTLKKTYWWPGMKRQIAEYVDRCLICQQVKPMRQRPGGLLNLLPVPEWKWKHITMDFL 1242

Query: 61   FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPVPY---- 120
            FGLPRTSRGYDGIW           FIPIK  STLDQLAKLYVDRIVSQHGVPV      
Sbjct: 1243 FGLPRTSRGYDGIWVIADRLTKTARFIPIKAMSTLDQLAKLYVDRIVSQHGVPVSIVSDR 1302

Query: 121  --RTPVCWNEVGERKLIGPELVQVTSDNIKLIWENLKIAQDRQKSYADKRRRDLEFQIGE 180
              RTPVCWNEVGERKL+ PELVQVTSDNIKLI ENLKIAQDRQKSY DKRRRDLEFQIGE
Sbjct: 1303 DPRTPVCWNEVGERKLVDPELVQVTSDNIKLIKENLKIAQDRQKSYVDKRRRDLEFQIGE 1362

Query: 181  QVFLKLSSCRGVLHFGRKDPSHVLKVQPIELKEDLSYREEALQILDRKKQSTGFSSKPGG 240
            QVFLKLSS RGVL F RK+                                   SSKPGG
Sbjct: 1363 QVFLKLSSWRGVLRFERKEHR--------------------------------ISSKPGG 1413

Query: 241  FLVFSDALSILKVHKSNQKLYLL 247
            F+VF D LSIL+VHKSNQKLYL+
Sbjct: 1423 FMVFYDTLSILEVHKSNQKLYLV 1413

[Close]

BLAST of Pay0004831.1 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 4.4e-92
Identity = 183/263 (69.58%), Postives = 192/263 (73.00%), Query Frame = 0


Query: 1    MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
            MYRTLKKTYW PGMKR+I EYVDRC ICQQVK +RQRP GLLN + VPEWKW+HITMDFL
Sbjct: 1183 MYRTLKKTYWWPGMKRQIAEYVDRCLICQQVKPMRQRPGGLLNLLPVPEWKWKHITMDFL 1242

Query: 61   FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPVPY---- 120
            FGLPRTSRGYDGIW           FIPIK  STLDQLAKLYVDRIVSQHGVPV      
Sbjct: 1243 FGLPRTSRGYDGIWVIADRLTKTARFIPIKAMSTLDQLAKLYVDRIVSQHGVPVSIVSDR 1302

Query: 121  --RTPVCWNEVGERKLIGPELVQVTSDNIKLIWENLKIAQDRQKSYADKRRRDLEFQIGE 180
              RTPVCWNEVGERKL+ PELVQVTSDNIKLI ENLKIAQDRQKSY DKRRRDLEFQIGE
Sbjct: 1303 DPRTPVCWNEVGERKLVDPELVQVTSDNIKLIKENLKIAQDRQKSYVDKRRRDLEFQIGE 1362

Query: 181  QVFLKLSSCRGVLHFGRKDPSHVLKVQPIELKEDLSYREEALQILDRKKQSTGFSSKPGG 240
            QVFLKLSS RGVL F RK+                                   SSKPGG
Sbjct: 1363 QVFLKLSSWRGVLRFERKEHR--------------------------------ISSKPGG 1413

Query: 241  FLVFSDALSILKVHKSNQKLYLL 247
            F+VF D LSIL+VHKSNQKLYL+
Sbjct: 1423 FMVFYDTLSILEVHKSNQKLYLV 1413

[Close]

BLAST of Pay0004831.1 vs. NCBI nr
Match: KAA0067723.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 6.2e-86
Identity = 191/363 (52.62%), Postives = 198/363 (54.55%), Query Frame = 0


Query: 1   MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
           MYRTLKKTYW PGMKREI EYVDRC ICQQVK VRQRP GLLNP+ VPEWKWEHITMDFL
Sbjct: 91  MYRTLKKTYWWPGMKREIAEYVDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFL 150

Query: 61  FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPV------ 120
           FGLPRTSRG+DGIW           FIPIK TSTLDQL KLYVDRIVSQHGV +      
Sbjct: 151 FGLPRTSRGFDGIWVIVDRLTKTAQFIPIKATSTLDQLVKLYVDRIVSQHGVLMSIVSDR 210

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 211 DPRFTSKFWPSVQKAMGTKLKFSTAFHPLTDGQSERTIQTLEDMLRACVLQFKGNWDTHL 270

Query: 181 --------------------------PYRTPVCWNEVGERKLIGPELVQVTSDNIKLIWE 214
                                     P RTPVCWNEVGERKL+GPELVQVTSDNIKLI E
Sbjct: 271 SLMEFAYNNNYQSSIDMTLFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNIKLIKE 330

[Close]

BLAST of Pay0004831.1 vs. NCBI nr
Match: KAA0041108.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.5e-84
Identity = 174/316 (55.06%), Postives = 195/316 (61.71%), Query Frame = 0


Query: 1    MYRTLKKTYWSPGMKREIVEYVDRCSICQQVKTVRQRPEGLLNPMSVPEWKWEHITMDFL 60
            MYRTLKKTYW  GMK+EI EYVDRC ICQQVK VRQRP G LNP+ VPEWKWEHITMDFL
Sbjct: 1604 MYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFL 1663

Query: 61   FGLPRTSRGYDGIW-----------FIPIKVTSTLDQLAKLYVDRIVSQHGVPV------ 120
            FGLPRTS G+DGIW           FIPIK+TSTLDQLA+LYVD+IVSQ+GVPV      
Sbjct: 1664 FGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDR 1723

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 1724 DPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHL 1783

Query: 181  --------------------------PYRTPVCWNEVGERKLIGPELVQVTSDNIKLIWE 214
                                      P RTPVCWNEVGERKL+GPELVQ+T++NIKLI E
Sbjct: 1784 PLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRE 1843

The following BLAST results are available for this feature:

BLAST of Pay0004831.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.2e-10	35.24	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.2e-10	35.24	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	9.9e-10	30.28	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	9.9e-10	30.28	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.9e-10	30.28	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Pay0004831.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAP1	3.9e-110	80.47	uncharacterized protein LOC103498328 OS=Cucumis melo OX=3656 GN=LOC103498328 PE=...	[more]
A0A5A7TKT0	2.2e-92	69.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3D150	2.2e-92	69.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A5A7VI06	3.0e-86	52.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]
A0A5A7TDR2	7.4e-85	55.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]

BLAST of Pay0004831.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459128.1	8.1e-110	80.47	PREDICTED: uncharacterized protein LOC103498328 [Cucumis melo]	[more]
KAA0042035.1	4.4e-92	69.58	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK17971.1	4.4e-92	69.58	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0067723.1	6.2e-86	52.62	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0041108.1	1.5e-84	55.06	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Pay0004831.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.70		coord: 1..32 e-value: 1.1E-6 score: 30.8
None	No IPR available	PANTHER	PTHR24559:SF360	SUBFAMILY NOT NAMED	coord: 7..86
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 7..86
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 1..33 e-value: 9.4E-9 score: 35.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0004831	Pay0004831	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0004831.1-exon	Pay0004831.1-exon-chr09:3545613..3545621	exon
Pay0004831.1-exon	Pay0004831.1-exon-chr09:3547481..3547576	exon
Pay0004831.1-exon	Pay0004831.1-exon-chr09:3548100..3548194	exon
Pay0004831.1-exon	Pay0004831.1-exon-chr09:3548336..3548571	exon
Pay0004831.1-exon	Pay0004831.1-exon-chr09:3548848..3548933	exon
Pay0004831.1-exon	Pay0004831.1-exon-chr09:3548967..3549188	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0004831.1-cds	Pay0004831.1-cds-chr09:3545613..3545621	CDS
Pay0004831.1-cds	Pay0004831.1-cds-chr09:3547481..3547576	CDS
Pay0004831.1-cds	Pay0004831.1-cds-chr09:3548100..3548194	CDS
Pay0004831.1-cds	Pay0004831.1-cds-chr09:3548336..3548571	CDS
Pay0004831.1-cds	Pay0004831.1-cds-chr09:3548848..3548933	CDS
Pay0004831.1-cds	Pay0004831.1-cds-chr09:3548967..3549188	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0004831.1	Pay0004831.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity