Pay0002042.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0002042.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Late embryogenesis abundant protein
Location	Contig00140_ERROPOS1134973: 65316 .. 65965 (+)
Sequence length	650
RNA-Seq Expression	Pay0002042.1
Synteny	Pay0002042.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATACAGGTGGAGCGTATACGTGTGCGAAAGTAAGAGCTTAAAAGAGCAAATATAAGAACAAATCCAATTAGTGGAAAAAATGAAGAAGAACCTTGTGATCCAGAGAAAATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGGCAAAACGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGGACTTCCGTTGGAGAGCAGTCCATACGTGAATTATAAAGACTTGGAAGATTACAAAAGCCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGCGGCGGCCCAACCGACGCCCCCACTCTCTCTGGCGACGCCGCCGCTTCCTCGGTGAATAACCGCCAAGGAGTACCCTGAGAAGACATTGCTTTCTTTTCCCGTTCTGTTTTCTTAAGGAATATTTATCGTGCTGCAGCTCAGTGTAGTTAATGTGTAATCTTGCAATGGGTAAGGTAGTGGATTAAAGCAGTTGGAATAATCGGAATGCTTTTTTTATATGAAATGTTAAGACATTTTAACACTCAAGAAGTTGTTGTTTTTTTGCTTTAATGCATTTTTCAAAAAAAAAAAATTATTTTGATGGTTTTTTTTAGTACATATAGGTGATGTAAAAGTGAATTTG

mRNA sequence

GAAAATACAGGTGGAGCGTATACGTGTGCGAAAGTAAGAGCTTAAAAGAGCAAATATAAGAACAAATCCAATTAGTGGAAAAAATGAAGAAGAACCTTGTGATCCAGAGAAAATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGGCAAAACGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGGACTTCCGTTGGAGAGCAGTCCATACGTGAATTATAAAGACTTGGAAGATTACAAAAGCCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGCGGCGGCCCAACCGACGCCCCCACTCTCTCTGGCGACGCCGCCGCTTCCTCGGTGAATAACCGCCAAGGAGTACCCTGAGAAGACATTGCTTTCTTTTCCCGTTCTGTTTTCTTAAGGAATATTTATCGTGCTGCAGCTCAGTGTAGTTAATGTGTAATCTTGCAATGGGTAAGGTAGTGGATTAAAGCAGTTGGAATAATCGGAATGCTTTTTTTATATGAAATGTTAAGACATTTTAACACTCAAGAAGTTGTTGTTTTTTTGCTTTAATGCATTTTTCAAAAAAAAAAAATTATTTTGATGGTTTTTTTTAGTACATATAGGTGATGTAAAAGTGAATTTG

Coding sequence (CDS)

ATGGAGAAGCGGGAGGCCGATCAGTCGCAGGGGCAAAACGAGGAGAGGAAAAGCGAAAGGGAAAAGGAGAGATCAGAGGGACTTCCGTTGGAGAGCAGTCCATACGTGAATTATAAAGACTTGGAAGATTACAAAAGCCAAGCCTACGGAACACAAGGCCATCTTCAGCCCAAGCCCGGCCGTGGCGGCGGCGGCGGCGGCCCAACCGACGCCCCCACTCTCTCTGGCGACGCCGCCGCTTCCTCGGTGAATAACCGCCAAGGAGTACCCTGA

Protein sequence

MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPGRGGGGGGPTDAPTLSGDAAASSVNNRQGVP

Homology

[Close]

BLAST of Pay0002042.1 vs. ExPASy TrEMBL
Match: A0A1S4DTA9 (uncharacterized protein LOC107990449 OS=Cucumis melo OX=3656 GN=LOC107990449 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG
Sbjct: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 91
          RGGGGGGPTDAPTLSGDAAASSVNNRQGVP
Sbjct: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 90

[Close]

BLAST of Pay0002042.1 vs. ExPASy TrEMBL
Match: A0A5D3CLL7 (Late embryogenesis abundant protein, LEA-18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004290 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.2e-38
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          MEKR+ADQSQGQNEE KSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG
Sbjct: 1  MEKRQADQSQGQNEEGKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 91
          RGGGGGGPTDAPTLSGDAAASSVNNRQGVP
Sbjct: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 90

[Close]

BLAST of Pay0002042.1 vs. ExPASy TrEMBL
Match: A0A0A0KGG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G493910 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.8e-28
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MEKREADQSQGQNEE-RKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKP 60
          MEKREADQSQGQN+E RKSEREKERSE +PLESSPYVNY+DLEDYK+QAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGGPTDAPTLSGDAAAS 82
          GR GGGGGPTDAPTLSGDAAA+
Sbjct: 61 GR-GGGGGPTDAPTLSGDAAAT 81

[Close]

BLAST of Pay0002042.1 vs. ExPASy TrEMBL
Match: A0A6J1KLI9 (uncharacterized protein LOC111496824 OS=Cucurbita maxima OX=3661 GN=LOC111496824 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.8e-26
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          M+KREADQ + Q  ERKSE ++ER EG+PLE+SPYVNYKDLEDYK+QAYG QGHL+PKP 
Sbjct: 2  MDKREADQPKRQQPERKSESKEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLEPKPS 61

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 91
          RGGGGGG TDAPTLSGD A SSV NRQGVP
Sbjct: 62 RGGGGGGSTDAPTLSGD-ALSSVINRQGVP 90

[Close]

BLAST of Pay0002042.1 vs. ExPASy TrEMBL
Match: A0A6J1HDU8 (uncharacterized protein LOC111463078 OS=Cucurbita moschata OX=3662 GN=LOC111463078 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.5e-22
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          M+KREADQ + Q  ERKS  E+ER EG+PLE+SPYVNYKDLEDYK+QAYG QGHL+ KP 
Sbjct: 1  MDKREADQPKRQQPERKSGSEEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLESKPS 60

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 91
          R GGGG  TDAPTLSGD A SSV NRQGVP
Sbjct: 61 RRGGGGS-TDAPTLSGD-AVSSVINRQGVP 88

[Close]

BLAST of Pay0002042.1 vs. NCBI nr
Match: XP_016899224.1 (PREDICTED: uncharacterized protein LOC107990449 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 6.0e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG
Sbjct: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 91
          RGGGGGGPTDAPTLSGDAAASSVNNRQGVP
Sbjct: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 90

[Close]

BLAST of Pay0002042.1 vs. NCBI nr
Match: TYK12837.1 (Late embryogenesis abundant protein, LEA-18 [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 8.7e-38
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          MEKR+ADQSQGQNEE KSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG
Sbjct: 1  MEKRQADQSQGQNEEGKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 91
          RGGGGGGPTDAPTLSGDAAASSVNNRQGVP
Sbjct: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 90

[Close]

BLAST of Pay0002042.1 vs. NCBI nr
Match: XP_038883215.1 (uncharacterized protein LOC120074234 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 5.1e-30
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          M+KRE DQ Q Q EERKS RE+ERSEG+PLESSPYVNYKDLEDYK QAYGTQGHLQPKPG
Sbjct: 1  MDKRETDQLQRQQEERKSGREEERSEGIPLESSPYVNYKDLEDYKDQAYGTQGHLQPKPG 60

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 91
          R G GGGPTDAPTLSGDAAASSV NRQGVP
Sbjct: 61 R-GDGGGPTDAPTLSGDAAASSVINRQGVP 89

[Close]

BLAST of Pay0002042.1 vs. NCBI nr
Match: XP_011657884.1 (uncharacterized protein LOC105435909 [Cucumis sativus] >KGN48583.1 hypothetical protein Csa_003163 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MEKREADQSQGQNEE-RKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKP 60
          MEKREADQSQGQN+E RKSEREKERSE +PLESSPYVNY+DLEDYK+QAYGTQGHLQPKP
Sbjct: 1  MEKREADQSQGQNKEIRKSEREKERSEEIPLESSPYVNYEDLEDYKNQAYGTQGHLQPKP 60

Query: 61 GRGGGGGGPTDAPTLSGDAAAS 82
          GR GGGGGPTDAPTLSGDAAA+
Sbjct: 61 GR-GGGGGPTDAPTLSGDAAAT 81

[Close]

BLAST of Pay0002042.1 vs. NCBI nr
Match: XP_023003117.1 (uncharacterized protein LOC111496824 [Cucurbita maxima])

HSP 1 Score: 127.5 bits (319), Expect = 5.9e-26
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          M+KREADQ + Q  ERKSE ++ER EG+PLE+SPYVNYKDLEDYK+QAYG QGHL+PKP 
Sbjct: 2  MDKREADQPKRQQPERKSESKEERLEGIPLETSPYVNYKDLEDYKNQAYGAQGHLEPKPS 61

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNNRQGVP 91
          RGGGGGG TDAPTLSGD A SSV NRQGVP
Sbjct: 62 RGGGGGGSTDAPTLSGD-ALSSVINRQGVP 90

[Close]

BLAST of Pay0002042.1 vs. TAIR 10
Match: AT2G33690.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-13
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 21 EKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPGRGGGGGGPTDAPTLSGDAAA 80
          + E  + LPLE+SPY  Y+D+EDYK  AYGT GH   KPG    GGG TDAPT SGDAA 
Sbjct: 3  KSEEKQELPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGH---GGGTTDAPTPSGDAAP 62

Query: 81 SSVNN 86
          S++++
Sbjct: 63 SAIDS 64

[Close]

BLAST of Pay0002042.1 vs. TAIR 10
Match: AT2G23110.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-08
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 10 QGQNEERKSEREKERSEGLPLES--SPYVNYKDLEDYKSQAYGTQGHLQPKPGRGGGGGG 69
          + Q +   +E+E +  +   LES  +PY++Y +LEDYK + YG QGH +PK G GGG   
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA-- 61

Query: 70 PTDAPTLSG-----------DAAASSVNNRQGVP 91
           TDAPT SG           D +++   NRQGVP
Sbjct: 62 -TDAPTPSGGLGRGGGAASTDLSSTDAINRQGVP 92

[Close]

BLAST of Pay0002042.1 vs. TAIR 10
Match: AT2G23110.2 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 54.3 bits (129), Expect = 5.9e-08
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 10 QGQNEERKSEREKERSEGLPLES--SPYVNYKDLEDYKSQAYGTQGHLQPKPGRGGGGGG 69
          + Q +   +E+E +  +   LES  +PY++Y +LEDYK + YG QGH +PK G GGG   
Sbjct: 2  EDQKKPPTTEQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGA-- 61

Query: 70 PTDAPTLSG-----------DAAASSVNNRQGVP 91
           TDAPT SG           D +++   NRQGVP
Sbjct: 62 -TDAPTPSGGLGRGGGAASTDLSSTDAINRQGVP 92

[Close]

BLAST of Pay0002042.1 vs. TAIR 10
Match: AT2G23120.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 1  MEKREADQSQGQNEERKSEREKERSEGLPLESSPYVNYKDLEDYKSQAYGTQGHLQPKPG 60
          ME  +   +     E+K+E+ K+    LP + SPY+    LEDYK +AYG +GH +P PG
Sbjct: 1  MEAGKTPPTTTTTTEKKTEQVKDND--LPTD-SPYMATGTLEDYKLKAYGAEGHQEPTPG 60

Query: 61 RGGGGGGPTDAPTLSGDAAASSVNN 86
           GGG    TDAPT SGDA A++  +
Sbjct: 61 LGGGS---TDAPTPSGDAPAATTTD 79

The following BLAST results are available for this feature:

BLAST of Pay0002042.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0002042.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DTA9	2.9e-39	100.00	uncharacterized protein LOC107990449 OS=Cucumis melo OX=3656 GN=LOC107990449 PE=...	[more]
A0A5D3CLL7	4.2e-38	97.78	Late embryogenesis abundant protein, LEA-18 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KGG1	8.8e-28	90.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G493910 PE=4 SV=1	[more]
A0A6J1KLI9	2.8e-26	77.78	uncharacterized protein LOC111496824 OS=Cucurbita maxima OX=3661 GN=LOC111496824...	[more]
A0A6J1HDU8	2.5e-22	74.44	uncharacterized protein LOC111463078 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]

BLAST of Pay0002042.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899224.1	6.0e-39	100.00	PREDICTED: uncharacterized protein LOC107990449 [Cucumis melo]	[more]
TYK12837.1	8.7e-38	97.78	Late embryogenesis abundant protein, LEA-18 [Cucumis melo var. makuwa]	[more]
XP_038883215.1	5.1e-30	86.67	uncharacterized protein LOC120074234 [Benincasa hispida]	[more]
XP_011657884.1	1.8e-27	90.24	uncharacterized protein LOC105435909 [Cucumis sativus] >KGN48583.1 hypothetical ...	[more]
XP_023003117.1	5.9e-26	77.78	uncharacterized protein LOC111496824 [Cucurbita maxima]	[more]

BLAST of Pay0002042.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33690.1	2.1e-13	56.92	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	5.9e-08	41.49	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.2	5.9e-08	41.49	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	1.4e-06	43.53	Late embryogenesis abundant protein, group 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 22..90 e-value: 2.8E-27 score: 94.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..90
None	No IPR available	PANTHER	PTHR33922	OS01G0888066 PROTEIN-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR33922:SF9	EMBRYOGENESIS ABUNDANT PROTEIN GROUP 8 PROTEIN, PUTATIVE-RELATED	coord: 1..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0002042	Pay0002042	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0002042.1-five_prime_utr	Pay0002042.1-five_prime_utr-Contig00140_ERROPOS1134973:65316..65427	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0002042.1-exon	Pay0002042.1-exon-Contig00140_ERROPOS1134973:65316..65965	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0002042.1-cds	Pay0002042.1-cds-Contig00140_ERROPOS1134973:65428..65700	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0002042.1-three_prime_utr	Pay0002042.1-three_prime_utr-Contig00140_ERROPOS1134973:65701..65965	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0002042.1	Pay0002042.1-protein	polypeptide