Pay0001554.2 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0001554.2
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	F-box protein
Location	chr08: 2623769 .. 2625679 (+)
Sequence length	1723
RNA-Seq Expression	Pay0001554.2
Synteny	Pay0001554.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGTGAGAAATCCCCCATCTTTTTTTCCACCGCTATATAACACAGAGTATCGACAATTTTAAAAGCAACTCCGTAGTTCCCTGAGTTTCCATTTCAAGAGCATAAGCAAAAACCTTTCTTTGAAATCTCAAAACACAAAAACAGATAGTCATACATTCAGATATTCGAATCTCCTTCTTAATCAGGTTCGTTTCCTTCCCGATTTCGATTCCTTATTCGTCACTTTCAATCTGCTTTTCGAGACTGTTCTCTCAAATACTCCTTTGCTTCTTCCATCAGATTTTTGTTAGGGTTTTTTTTAGGATTCGGTACTTTCTTTTTATGACTTTTTTTTTTCTTCTAGTTCTAAATGATTGATTATTGTTCTTTTCCGCTCGTTAATACAGATAAAACGAATAGGTTTAATTTAATTCGAGTATTTGAGAATTGAGAATGGCTTTGGGAAAGAAGACCGGTTGTTTGAAATCCAAAAGCGTCGTCTCTGCTGCTGATAAAGGACTGGATTTCGGAGTCGTGAGATATACTCGTGGTTTAGGAAGGAAACGTGTCGTGATTTCTTGCAATGAGGAAGATTCATCCATCGACTTGACACCGAAGGCGCCGTCCAAAAGGCACTGCAACGTTGTCAGTACGGCGGTGGAGGCCGATAGGTCTCTGCTCGAGGCTCTGCCTCAGGAGATTCTGGTTAGTGCTTCATAGGAGATTGAAATAGTTTCGCATTGTATCTTTCATTTGATTATTGTTTCTGAATAGATTTTCCCCCCTTTATCTTCTCCATCAGATTAGGGTTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAATCCGCGTTTCGAAAACAATTAGCGAAGCGGTAAGTAAATATCATTCGAATCATTCTTCACTTTATTTCATTTGGTGATTCAACGATTCTCATCAATTTAGGGTTTCATTCACATTTACAGACTTTGATTGCAAAAGACTCGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTGCGTTTCGCACCGCCATTGAATTAGACGACTCCAGCGATTTCGACGAGATTGAAGCGCCAAATGCTCGTCCCACAAGACGATTCAGATCTCCATTAAATAGAAAGAAGCTAGCGGAGATATCCGTAGCCTTATTTGCCGAAGAAGAAGATGAATGGCCAAAGAAGAAATTGCCCATTTGGACAGAGATGTGAATTTCAACAACCCAGAGGGCTCTGTAAATACAATCTGTACTCATATTGTTGTAGAAACGCGGTTGTGGTGGTAGGAAGAAAGCTGTAGTTAAGGATCTGGAATCTCAGATCTTGGTTGAAGAAAAAGAAGTAGCTGTACATTCCCACTGACCAAATCTTCAAATCTTTCGTTGAAGATGAAGATGGTGGGTGGGTTAGAAATGCATTTCTTTTTTTCTTTTTTTTGTACAGGTATTATTACAGACAGATTGATAGGCAAATTCGTTGATAAAGGGTAGCATTTTGGTTTAGTCCCTTTCAAATTCTCTGATAAATTTGAACAGTACATTTGTATGTACTTCCTCTCATTCTTTCTTTATCTAATAAAAATCGAACTATATTTTCCTCGCAATCTTGTGTCATTATTGATGTTCTTCCCTTCATATGTATTTTGCTCGTTTTTTTTCCATAATTTGATGAAGTGTGGGATTTTGGGTTTTCTCCATTTCTTTCCTTTTTTGGTGTGGTGTATGATGGAATGATTTGTAACGTATGAGAGATCAAGTAGAATTTGGAAATGGAATAGAAATGATGAGAAAGCAATCGACTTTGATTGACAGCTGTTTGTTCTACTTTTTCCTTGCTAGAAAGAGCTTGAAATTCTCAATTATATGTTTCTGTACAATCTGGCTGATGAACTGGCGAACCCCAAAACTTCCTCTCATTAGAGACTTCA

mRNA sequence

GAAAAGTGAGAAATCCCCCATCTTTTTTTCCACCGCTATATAACACAGAGTATCGACAATTTTAAAAGCAACTCCGTAGTTCCCTGAGTTTCCATTTCAAGAGCATAAGCAAAAACCTTTCTTTGAAATCTCAAAACACAAAAACAGATAGTCATACATTCAGATATTCGAATCTCCTTCTTAATCAGGTTCGTTTCCTTCCCGATTTCGATTCCTTATTCGTCACTTTCAATCTGCTTTTCGAGACTGTTCTCTCAAATACTCCTTTGCTTCTTCCATCAGATTTTTGTTAGGGTTTTTTTTAGGATTCGGTACTTTCTTTTTATGACTTTTTTTTTTCTTCTAGTTCTAAATGATTGATTATTGTTCTTTTCCGCTCGTTAATACAGATAAAACGAATAGGTTTAATTTAATTCGAGTATTTGAGAATTGAGAATGGCTTTGGGAAAGAAGACCGGTTGTTTGAAATCCAAAAGCGTCGTCTCTGCTGCTGATAAAGGACTGGATTTCGGAGTCGTGAGATATACTCGTGGTTTAGGAAGGAAACGTGTCGTGATTTCTTGCAATGAGGAAGATTCATCCATCGACTTGACACCGAAGGCGCCGTCCAAAAGGCACTGCAACGTTGTCAGTACGGCGGTGGAGGCCGATAGGTCTCTGCTCGAGGCTCTGCCTCAGGAGATTCTGATTAGGGTTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAATCCGCGTTTCGAAAACAATTAGCGAAGCGACTTTGATTGCAAAAGACTCGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTGCGTTTCGCACCGCCATTGAATTAGACGACTCCAGCGATTTCGACGAGATTGAAGCGCCAAATGCTCGTCCCACAAGACGATTCAGATCTCCATTAAATAGAAAGAAGCTAGCGGAGATATCCGTAGCCTTATTTGCCGAAGAAGAAGATGAATGGCCAAAGAAGAAATTGCCCATTTGGACAGAGATGTGAATTTCAACAACCCAGAGGGCTCTGTAAATACAATCTGTACTCATATTGTTGTAGAAACGCGGTTGTGGTGGTAGGAAGAAAGCTGTAGTTAAGGATCTGGAATCTCAGATCTTGGTTGAAGAAAAAGAAGTAGCTGTACATTCCCACTGACCAAATCTTCAAATCTTTCGTTGAAGATGAAGATGGTGGGTGGGTTAGAAATGCATTTCTTTTTTTCTTTTTTTTGTACAGGTATTATTACAGACAGATTGATAGGCAAATTCGTTGATAAAGGGTAGCATTTTGGTTTAGTCCCTTTCAAATTCTCTGATAAATTTGAACAGTACATTTGTATGTACTTCCTCTCATTCTTTCTTTATCTAATAAAAATCGAACTATATTTTCCTCGCAATCTTGTGTCATTATTGATGTTCTTCCCTTCATATGTATTTTGCTCGTTTTTTTTCCATAATTTGATGAAGTGTGGGATTTTGGGTTTTCTCCATTTCTTTCCTTTTTTGGTGTGGTGTATGATGGAATGATTTGTAACGTATGAGAGATCAAGTAGAATTTGGAAATGGAATAGAAATGATGAGAAAGCAATCGACTTTGATTGACAGCTGTTTGTTCTACTTTTTCCTTGCTAGAAAGAGCTTGAAATTCTCAATTATATGTTTCTGTACAATCTGGCTGATGAACTGGCGAACCCCAAAACTTCCTCTCATTAGAGACTTCA

Coding sequence (CDS)

ATGGCTTTGGGAAAGAAGACCGGTTGTTTGAAATCCAAAAGCGTCGTCTCTGCTGCTGATAAAGGACTGGATTTCGGAGTCGTGAGATATACTCGTGGTTTAGGAAGGAAACGTGTCGTGATTTCTTGCAATGAGGAAGATTCATCCATCGACTTGACACCGAAGGCGCCGTCCAAAAGGCACTGCAACGTTGTCAGTACGGCGGTGGAGGCCGATAGGTCTCTGCTCGAGGCTCTGCCTCAGGAGATTCTGATTAGGGTTCTCTGCGGTGTGGAACATGATGATTTGAAACAGCTAATCCGCGTTTCGAAAACAATTAGCGAAGCGACTTTGATTGCAAAAGACTCGCATTTCGCTTATAGCACTCCCTCGAAGGTCCGTGCGTTTCGCACCGCCATTGAATTAGACGACTCCAGCGATTTCGACGAGATTGAAGCGCCAAATGCTCGTCCCACAAGACGATTCAGATCTCCATTAAATAGAAAGAAGCTAGCGGAGATATCCGTAGCCTTATTTGCCGAAGAAGAAGATGAATGGCCAAAGAAGAAATTGCCCATTTGGACAGAGATGTGA

Protein sequence

MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKRHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAYSTPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWPKKKLPIWTEM

Homology

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BLAST of Pay0001554.2 vs. ExPASy Swiss-Prot
Match: O65416 (F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-29
Identity = 80/192 (41.67%), Postives = 120/192 (62.50%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGV--VRYTRGLGRKRVVI-SCNEEDSS-----IDL 60
           MAL K+   + S +     ++ L+ G+  VR+TRGLGRKR++I SC  E  S     I +
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  TPKAP--------SKRHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSK 120
             ++P         +    +VS++  +++S LE LPQ++LIRV+CGV+H+DLK L  VSK
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSS-SSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSK 153

Query: 121 TISEATLIAKDSHFAYSTPSKVRAFRTAIELDDSSDF----DEIEAPNARPTRRFRSPLN 173
           +I EA+L+AK  HFAY+TP K RAFR +I+L++ SD     D+IE PNA    R+     
Sbjct: 154 SIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKR 213

[Close]

BLAST of Pay0001554.2 vs. ExPASy Swiss-Prot
Match: Q8GX77 (F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.1e-28
Identity = 86/186 (46.24%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MALGKK-----TGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEE-DSSIDLTP 60
           MALGKK        L+ +  V     GL    V+Y RG GRKR++IS  +E + SI  +P
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  KAPSKRHCNVVSTAV-EADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIA 120
               K+ C+  +T+V E     LE LP +IL+R++CGVEH+DLKQL  VSKTI EAT+IA
Sbjct: 61  --VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIA 120

Query: 121 KDSHFAYSTPSKVRAFRTA-----IELDDSSDFDEIEAPNARPTRRFR-SPLNRKK-LAE 173
           K SHFAYSTP K   F           D   D +EIEAP A   +R+R S +NR K  + 
Sbjct: 121 KQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSG 180

[Close]

BLAST of Pay0001554.2 vs. ExPASy Swiss-Prot
Match: Q9S9T6 (F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 77/156 (49.36%), Postives = 96/156 (61.54%), Query Frame = 0


Query: 23  LDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKRHCNVVSTAVEADRSLLEALPQE 82
           L  G VR+TRGLGRKR++IS    ++        P KR  +      E+ RSLLE L Q+
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPEND-----SPPVKRPSH---ETTESCRSLLETLHQD 78

Query: 83  ILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAYSTPSKVRAFRTAIELDD----- 142
           ILIRVLC V+H+DL  L RVSKTI +A + AK SHF YSTP K   FR AI + D     
Sbjct: 79  ILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNS 138

Query: 143 SSDFDEIEAPNARPTRRFRSPLNRKK-LAEISVALF 173
           SS  DE+E PNA   RRF   +NR+  L++IS+ LF
Sbjct: 139 SSQDDEMEPPNAPIRRRF---INRESDLSKISMVLF 163

[Close]

BLAST of Pay0001554.2 vs. ExPASy Swiss-Prot
Match: Q5XF11 (F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-08
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 53  TPKAPSKRHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLI 112
           TPK P    C           S LE+LP ++L++++C + HD LK +  VS+ I  AT++
Sbjct: 147 TPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATIL 206

Query: 113 AKDSHFAYSTPSKVR 128
           A+  HF Y+TP + R
Sbjct: 207 ARQYHFNYTTPDRSR 213

[Close]

BLAST of Pay0001554.2 vs. ExPASy TrEMBL
Match: A0A5D3CPZ7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.7e-100
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120
           HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY
Sbjct: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180
           STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP
Sbjct: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIWTEM 191
           KKKLPIWTEM
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Pay0001554.2 vs. ExPASy TrEMBL
Match: A0A5A7UGT0 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120
            CNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180
           STPSKVRAFRTAIEL+DSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIWTEM 191
           KKKLPIWTEM
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Pay0001554.2 vs. ExPASy TrEMBL
Match: A0A1S3B0I0 (F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120
            CNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180
           STPSKVRAFRTAIEL+DSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIWTEM 191
           KKKLPIWTEM
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Pay0001554.2 vs. ExPASy TrEMBL
Match: A0A0A0KI01 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516960 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.9e-94
Identity = 179/190 (94.21%), Postives = 184/190 (96.84%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISC+EEDS  DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120
            CNVVSTAVE DRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTI+EATLIAKDSHFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180
           STPSKVR FRTAIELDDSSDFDEIEAPNA PTRRFR+PLNRKKLAEIS+ALFAEEED+WP
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFAEEEDQWP 180

Query: 181 KKKLPIWTEM 191
           KKKLPIWTEM
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Pay0001554.2 vs. ExPASy TrEMBL
Match: A0A6J1GEU1 (F-box protein SKIP27-like OS=Cucurbita moschata OX=3662 GN=LOC111453544 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.4e-77
Identity = 157/192 (81.77%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVS-AADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSK 60
           MALGKK+GCLKSKSVVS AADK LDFGVVRY RGLGRKRVVISCN+EDSSIDLTPKAPSK
Sbjct: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60

Query: 61  RHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFA 120
           R C+VVST V+AD SLLE LPQEIL+R+LCGV+HDDLKQL+RVSKTISEATLIAK+ HFA
Sbjct: 61  RRCSVVSTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YSTPSKVRAFRTAIELDDS-SDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDE 180
           Y TPSK+RAFRT+IELDD+  D DEIEAP+A  TRRFRSPL+RKKLA+ISVALFAEEE +
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPVTRRFRSPLSRKKLADISVALFAEEE-Q 180

Query: 181 WPKKKLPIWTEM 191
           WP+KK  I TEM
Sbjct: 181 WPRKKYAIETEM 191

[Close]

BLAST of Pay0001554.2 vs. NCBI nr
Match: TYK13104.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 374.0 bits (959), Expect = 7.6e-100
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120
           HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY
Sbjct: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180
           STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP
Sbjct: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIWTEM 191
           KKKLPIWTEM
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Pay0001554.2 vs. NCBI nr
Match: XP_008439907.1 (PREDICTED: F-box protein At4g05010-like [Cucumis melo] >KAA0052721.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 2.4e-98
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60

Query: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120
            CNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY
Sbjct: 61  RCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180
           STPSKVRAFRTAIEL+DSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP
Sbjct: 121 STPSKVRAFRTAIELNDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180

Query: 181 KKKLPIWTEM 191
           KKKLPIWTEM
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Pay0001554.2 vs. NCBI nr
Match: XP_004134730.1 (F-box protein At4g05010 [Cucumis sativus] >XP_031744056.1 F-box protein At4g05010 [Cucumis sativus] >KGN49188.1 hypothetical protein Csa_003153 [Cucumis sativus])

HSP 1 Score: 354.0 bits (907), Expect = 8.1e-94
Identity = 179/190 (94.21%), Postives = 184/190 (96.84%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISC+EEDS  DLTPKAPSKR
Sbjct: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCHEEDSPTDLTPKAPSKR 60

Query: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120
            CNVVSTAVE DRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTI+EATLIAKDSHFAY
Sbjct: 61  RCNVVSTAVEDDRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTINEATLIAKDSHFAY 120

Query: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180
           STPSKVR FRTAIELDDSSDFDEIEAPNA PTRRFR+PLNRKKLAEIS+ALFAEEED+WP
Sbjct: 121 STPSKVRRFRTAIELDDSSDFDEIEAPNACPTRRFRTPLNRKKLAEISIALFAEEEDQWP 180

Query: 181 KKKLPIWTEM 191
           KKKLPIWTEM
Sbjct: 181 KKKLPIWTEM 190

[Close]

BLAST of Pay0001554.2 vs. NCBI nr
Match: XP_038880993.1 (F-box protein SKIP27 [Benincasa hispida])

HSP 1 Score: 318.5 bits (815), Expect = 3.8e-83
Identity = 162/190 (85.26%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKR 60
           MALGKK+GCLKSK+VVSA DKGLDFGVVRYTRGLGRKRVVIS NEEDSSIDLTPKA SKR
Sbjct: 1   MALGKKSGCLKSKTVVSATDKGLDFGVVRYTRGLGRKRVVISYNEEDSSIDLTPKAQSKR 60

Query: 61  HCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAY 120
            C+VVSTAV++DRSLLEALPQEILI+VLCGVEHDDLKQL+RVSKTISEATL+AK+ HFAY
Sbjct: 61  RCSVVSTAVDSDRSLLEALPQEILIKVLCGVEHDDLKQLVRVSKTISEATLVAKEWHFAY 120

Query: 121 STPSKVRAFRTAIELDDSSDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDEWP 180
           +TPSKVR FRTAIELDDSSD+DEIEAP A  TRR R+PLNRKKLAEISVALF EEE++WP
Sbjct: 121 NTPSKVRTFRTAIELDDSSDYDEIEAPYAPHTRRIRTPLNRKKLAEISVALFVEEENQWP 180

Query: 181 KKKLPIWTEM 191
           KKKLPI  E+
Sbjct: 181 KKKLPIEREV 190

[Close]

BLAST of Pay0001554.2 vs. NCBI nr
Match: XP_022950447.1 (F-box protein SKIP27-like [Cucurbita moschata] >KAG6603722.1 F-box protein SKIP27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033902.1 F-box protein SKIP27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.7 bits (761), Expect = 6.9e-77
Identity = 157/192 (81.77%), Postives = 174/192 (90.62%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVS-AADKGLDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSK 60
           MALGKK+GCLKSKSVVS AADK LDFGVVRY RGLGRKRVVISCN+EDSSIDLTPKAPSK
Sbjct: 1   MALGKKSGCLKSKSVVSAAADKELDFGVVRYARGLGRKRVVISCNQEDSSIDLTPKAPSK 60

Query: 61  RHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFA 120
           R C+VVST V+AD SLLE LPQEIL+R+LCGV+HDDLKQL+RVSKTISEATLIAK+ HFA
Sbjct: 61  RRCSVVSTTVDADWSLLEVLPQEILLRILCGVDHDDLKQLVRVSKTISEATLIAKEWHFA 120

Query: 121 YSTPSKVRAFRTAIELDDS-SDFDEIEAPNARPTRRFRSPLNRKKLAEISVALFAEEEDE 180
           Y TPSK+RAFRT+IELDD+  D DEIEAP+A  TRRFRSPL+RKKLA+ISVALFAEEE +
Sbjct: 121 YRTPSKIRAFRTSIELDDNFIDLDEIEAPDAPVTRRFRSPLSRKKLADISVALFAEEE-Q 180

Query: 181 WPKKKLPIWTEM 191
           WP+KK  I TEM
Sbjct: 181 WPRKKYAIETEM 191

[Close]

BLAST of Pay0001554.2 vs. TAIR 10
Match: AT4G21510.1 (F-box family protein )

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-30
Identity = 80/192 (41.67%), Postives = 120/192 (62.50%), Query Frame = 0


Query: 1   MALGKKTGCLKSKSVVSAADKGLDFGV--VRYTRGLGRKRVVI-SCNEEDSS-----IDL 60
           MAL K+   + S +     ++ L+ G+  VR+TRGLGRKR++I SC  E  S     I +
Sbjct: 34  MALSKRGFVMTSNARFHGEEEELELGLGSVRFTRGLGRKRILISSCVRESLSRSAVEIPV 93

Query: 61  TPKAP--------SKRHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSK 120
             ++P         +    +VS++  +++S LE LPQ++LIRV+CGV+H+DLK L  VSK
Sbjct: 94  VSESPPVKSSLKRQRSRITIVSSS-SSEKSRLECLPQDLLIRVICGVDHEDLKSLKLVSK 153

Query: 121 TISEATLIAKDSHFAYSTPSKVRAFRTAIELDDSSDF----DEIEAPNARPTRRFRSPLN 173
           +I EA+L+AK  HFAY+TP K RAFR +I+L++ SD     D+IE PNA    R+     
Sbjct: 154 SIREASLVAKTLHFAYTTPKKTRAFRNSIDLEEVSDSRHQEDDIEPPNAPRHYRWTKAKR 213

[Close]

BLAST of Pay0001554.2 vs. TAIR 10
Match: AT1G61340.1 (F-box family protein )

HSP 1 Score: 125.2 bits (313), Expect = 5.7e-29
Identity = 86/186 (46.24%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MALGKK-----TGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEE-DSSIDLTP 60
           MALGKK        L+ +  V     GL    V+Y RG GRKR++IS  +E + SI  +P
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  KAPSKRHCNVVSTAV-EADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLIA 120
               K+ C+  +T+V E     LE LP +IL+R++CGVEH+DLKQL  VSKTI EAT+IA
Sbjct: 61  --VGKKLCDDKTTSVAEGQSRELEDLPLDILVRIICGVEHEDLKQLFHVSKTIREATMIA 120

Query: 121 KDSHFAYSTPSKVRAFRTA-----IELDDSSDFDEIEAPNARPTRRFR-SPLNRKK-LAE 173
           K SHFAYSTP K   F           D   D +EIEAP A   +R+R S +NR K  + 
Sbjct: 121 KQSHFAYSTPRKTSVFHHGRFGWDKPFDVEDDDEEIEAPGAPLQKRYRLSRINRNKDDSG 180

[Close]

BLAST of Pay0001554.2 vs. TAIR 10
Match: AT4G05010.1 (F-box family protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-25
Identity = 77/156 (49.36%), Postives = 96/156 (61.54%), Query Frame = 0


Query: 23  LDFGVVRYTRGLGRKRVVISCNEEDSSIDLTPKAPSKRHCNVVSTAVEADRSLLEALPQE 82
           L  G VR+TRGLGRKR++IS    ++        P KR  +      E+ RSLLE L Q+
Sbjct: 19  LGLGFVRFTRGLGRKRILISKRAPEND-----SPPVKRPSH---ETTESCRSLLETLHQD 78

Query: 83  ILIRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAYSTPSKVRAFRTAIELDD----- 142
           ILIRVLC V+H+DL  L RVSKTI +A + AK SHF YSTP K   FR AI + D     
Sbjct: 79  ILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYSTPKKRLPFRDAILILDSNSNS 138

Query: 143 SSDFDEIEAPNARPTRRFRSPLNRKK-LAEISVALF 173
           SS  DE+E PNA   RRF   +NR+  L++IS+ LF
Sbjct: 139 SSQDDEMEPPNAPIRRRF---INRESDLSKISMVLF 163

[Close]

BLAST of Pay0001554.2 vs. TAIR 10
Match: AT1G61340.2 (F-box family protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-22
Identity = 86/232 (37.07%), Postives = 110/232 (47.41%), Query Frame = 0


Query: 1   MALGKK-----TGCLKSKSVVSAADKGLDFGVVRYTRGLGRKRVVISCNEE-DSSIDLTP 60
           MALGKK        L+ +  V     GL    V+Y RG GRKR++IS  +E + SI  +P
Sbjct: 1   MALGKKRIVTQKPNLRQRRDVDNGGLGLGLEFVQYKRGFGRKRILISSGDEMEDSIFTSP 60

Query: 61  KAPSKRHCNVVSTAV-EADRSLLEALPQEIL----------------------------- 120
               K+ C+  +T+V E     LE LP +IL                             
Sbjct: 61  --VGKKLCDDKTTSVAEGQSRELEDLPLDILLRVFVNSASVNQIELKVESFLFSEIQNRN 120

Query: 121 -----------------IRVLCGVEHDDLKQLIRVSKTISEATLIAKDSHFAYSTPSKVR 173
                            +R++CGVEH+DLKQL  VSKTI EAT+IAK SHFAYSTP K  
Sbjct: 121 GNEKMFNFFHIWKTFVIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKTS 180

[Close]

BLAST of Pay0001554.2 vs. TAIR 10
Match: AT4G35930.1 (F-box family protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-09
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 53  TPKAPSKRHCNVVSTAVEADRSLLEALPQEILIRVLCGVEHDDLKQLIRVSKTISEATLI 112
           TPK P    C           S LE+LP ++L++++C + HD LK +  VS+ I  AT++
Sbjct: 147 TPKTPQADPC--------VSESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATIL 206

Query: 113 AKDSHFAYSTPSKVR 128
           A+  HF Y+TP + R
Sbjct: 207 ARQYHFNYTTPDRSR 213

The following BLAST results are available for this feature:

BLAST of Pay0001554.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65416	3.3e-29	41.67	F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2	[more]
Q8GX77	8.1e-28	46.24	F-box protein At1g61340 OS=Arabidopsis thaliana OX=3702 GN=At1g61340 PE=2 SV=1	[more]
Q9S9T6	1.9e-24	49.36	F-box protein At4g05010 OS=Arabidopsis thaliana OX=3702 GN=At4g05010 PE=2 SV=1	[more]
Q5XF11	5.4e-08	37.33	F-box protein At4g35930 OS=Arabidopsis thaliana OX=3702 GN=At4g35930 PE=2 SV=1	[more]

BLAST of Pay0001554.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPZ7	3.7e-100	100.00	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007130...	[more]
A0A5A7UGT0	1.2e-98	98.95	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003340...	[more]
A0A1S3B0I0	1.2e-98	98.95	F-box protein At4g05010-like OS=Cucumis melo OX=3656 GN=LOC103484553 PE=4 SV=1	[more]
A0A0A0KI01	3.9e-94	94.21	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516960 PE=4 ...	[more]
A0A6J1GEU1	3.4e-77	81.77	F-box protein SKIP27-like OS=Cucurbita moschata OX=3662 GN=LOC111453544 PE=4 SV=...	[more]

BLAST of Pay0001554.2 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13104.1	7.6e-100	100.00	F-box protein [Cucumis melo var. makuwa]	[more]
XP_008439907.1	2.4e-98	98.95	PREDICTED: F-box protein At4g05010-like [Cucumis melo] >KAA0052721.1 F-box prote...	[more]
XP_004134730.1	8.1e-94	94.21	F-box protein At4g05010 [Cucumis sativus] >XP_031744056.1 F-box protein At4g0501...	[more]
XP_038880993.1	3.8e-83	85.26	F-box protein SKIP27 [Benincasa hispida]	[more]
XP_022950447.1	6.9e-77	81.77	F-box protein SKIP27-like [Cucurbita moschata] >KAG6603722.1 F-box protein SKIP2...	[more]

BLAST of Pay0001554.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21510.1	2.3e-30	41.67	F-box family protein	[more]
AT1G61340.1	5.7e-29	46.24	F-box family protein	[more]
AT4G05010.1	1.3e-25	49.36	F-box family protein	[more]
AT1G61340.2	2.3e-22	37.07	F-box family protein	[more]
AT4G35930.1	3.9e-09	37.33	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34049	F-BOX PROTEIN SKIP27	coord: 5..177
None	No IPR available	PANTHER	PTHR34049:SF1	F-BOX PROTEIN SKIP27	coord: 5..177
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 73..121 score: 9.417986

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0001554	Pay0001554	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0001554.2-five_prime_utr	Pay0001554.2-five_prime_utr-chr08:2623769..2624203	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0001554.2-exon	Pay0001554.2-exon-chr08:2623769..2624455	exon
Pay0001554.2-exon	Pay0001554.2-exon-chr08:2624553..2624627	exon
Pay0001554.2-exon	Pay0001554.2-exon-chr08:2624719..2625679	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0001554.2-cds	Pay0001554.2-cds-chr08:2624204..2624455	CDS
Pay0001554.2-cds	Pay0001554.2-cds-chr08:2624553..2624627	CDS
Pay0001554.2-cds	Pay0001554.2-cds-chr08:2624719..2624964	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0001554.2-three_prime_utr	Pay0001554.2-three_prime_utr-chr08:2624965..2625679	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0001554.2	Pay0001554.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding