PI0029144.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0029144.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Tryptophan synthase beta type 2
Location	chr06: 16857983 .. 16858612 (-)
Sequence length	630
RNA-Seq Expression	PI0029144.1
Synteny	PI0029144.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTTGCCATTTTTGTTGTGAAATTTTGCAGGTTAGGTTATTGTGTGAAGGGAAAAAGCTAAGGATGGTGTTGAGGGTAGTAGTGAATTTGAAAGCAAAAATAATGAAGTCATTGAAGATGAAGATGAAGATGAAAGCAACAAATTATGATGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAGGCCCAAAAGCTCATCCAACAGTCCTTGAAATTTGCTGACTCTCCCTCCTCTAAAACTTATGCTTTTTGATTTTTTTTATTAATTCTCTCTTATATCTCAATCAATTCCACCCCCTTTTATCTACCCTTTTCTCCCTTCATCACTTTATAATTATGAAGAAAAGTATAAAATAAGTCTCTTTTCCTTCTTCTCTCATCTTCTTCTTCTCTCATCCTCTTTTTGTCCCATTTTTTCCTTTTGTCGTTGAAACCATGAAATTCATAGTTACTAATACATTTTGTATGTCAATTCAGCTACACTCCCTTCGTCAAACAGTGTTTAAATTTTCTATTTTATATATATATATGAGAGACTGTGTTTTTATTA

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTTGCCATTTTTGTTGTGAAATTTTGCAGGTTAGGTTATTGTGTGAAGGGAAAAAGCTAAGGATGGTGTTGAGGGTAGTAGTGAATTTGAAAGCAAAAATAATGAAGTCATTGAAGATGAAGATGAAGATGAAAGCAACAAATTATGATGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAGGCCCAAAAGCTCATCCAACAGTCCTTGAAATTTGCTGACTCTCCCTCCTCTAAAACTTATGCTTTTTGATTTTTTTTATTAATTCTCTCTTATATCTCAATCAATTCCACCCCCTTTTATCTACCCTTTTCTCCCTTCATCACTTTATAATTATGAAGAAAAGTATAAAATAAGTCTCTTTTCCTTCTTCTCTCATCTTCTTCTTCTCTCATCCTCTTTTTGTCCCATTTTTTCCTTTTGTCGTTGAAACCATGAAATTCATAGTTACTAATACATTTTGTATGTCAATTCAGCTACACTCCCTTCGTCAAACAGTGTTTAAATTTTCTATTTTATATATATATATGAGAGACTGTGTTTTTATTA

Coding sequence (CDS)

ATGGTGTTGAGGGTAGTAGTGAATTTGAAAGCAAAAATAATGAAGTCATTGAAGATGAAGATGAAGATGAAAGCAACAAATTATGATGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAGGCCCAAAAGCTCATCCAACAGTCCTTGAAATTTGCTGACTCTCCCTCCTCTAAAACTTATGCTTTTTGA

Protein sequence

MVLRVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYAF

Homology

[Close]

BLAST of PI0029144.1 vs. ExPASy TrEMBL
Match: A0A5C7HLI3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015680 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
          R++VNLK+KI +SLKMK+         YDK+EKSESMRVEIRSRKA+KL++Q+LK ADSP
Sbjct: 5  RLMVNLKSKISRSLKMKIN------KHYDKIEKSESMRVEIRSRKARKLVEQTLKIADSP 64

Query: 64 SSKTYAF 71
          ++KT+ F
Sbjct: 65 NTKTFVF 65

[Close]

BLAST of PI0029144.1 vs. ExPASy TrEMBL
Match: A0A445DAW0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g017389 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.5e-10
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
          R+VVNLK+KI KSLKM MK  ++ Y  YDKMEKSESMRVEIRSRKA+KLI+ +LK ADSP
Sbjct: 6  RLVVNLKSKI-KSLKM-MKKASSYY--YDKMEKSESMRVEIRSRKARKLIEDTLKIADSP 65

Query: 64 -SSKTYAF 71
           SSKTY F
Sbjct: 66 KSSKTYTF 69

[Close]

BLAST of PI0029144.1 vs. ExPASy TrEMBL
Match: A0A7J7IA61 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_002615 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.4e-10
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
          R+VVNLK+K ++SLK+K         DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP
Sbjct: 26 RLVVNLKSK-LRSLKLKK-------PDYDKIEKSESMRVEIRSRKARKLVEETLKIADSP 84

Query: 64 SSKTYAF 71
           S+TYAF
Sbjct: 86 KSRTYAF 84

[Close]

BLAST of PI0029144.1 vs. ExPASy TrEMBL
Match: A0A4S4DW15 (RNase H domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_003531 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.4e-10
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 4   RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
           R+VVNLK+K ++SLK+K         DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP
Sbjct: 79  RLVVNLKSK-LRSLKLKK-------PDYDKIEKSESMRVEIRSRKARKLVEETLKIADSP 137

Query: 64  SSKTYAF 71
            S+TYAF
Sbjct: 139 KSRTYAF 137

[Close]

BLAST of PI0029144.1 vs. ExPASy TrEMBL
Match: M1AMJ5 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
          R++VNLK K+ +S KMK        + YDK+EKSESMRVEIRS+KA+KLI+Q+LK ADSP
Sbjct: 5  RLMVNLKTKLRRSFKMK--------ESYDKIEKSESMRVEIRSKKARKLIEQTLKIADSP 63

Query: 64 SSKTYAF 71
           S++Y F
Sbjct: 65 KSRSYPF 63

[Close]

BLAST of PI0029144.1 vs. NCBI nr
Match: KAG7036740.1 (hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 2.8e-15
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
          R+VVNLKAKIMKSLKMK   KAT  D YDKMEKSESMRVEIRSRKAQKLIQQ++K ADSP
Sbjct: 3  RLVVNLKAKIMKSLKMK---KAT--DSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSP 62

Query: 64 SSKTYA 70
          SSKTYA
Sbjct: 63 SSKTYA 63

[Close]

BLAST of PI0029144.1 vs. NCBI nr
Match: TXG57851.1 (hypothetical protein EZV62_015680 [Acer yangbiense])

HSP 1 Score: 73.9 bits (180), Expect = 6.0e-10
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
          R++VNLK+KI +SLKMK+         YDK+EKSESMRVEIRSRKA+KL++Q+LK ADSP
Sbjct: 5  RLMVNLKSKISRSLKMKIN------KHYDKIEKSESMRVEIRSRKARKLVEQTLKIADSP 64

Query: 64 SSKTYAF 71
          ++KT+ F
Sbjct: 65 NTKTFVF 65

[Close]

BLAST of PI0029144.1 vs. NCBI nr
Match: RYQ78961.1 (hypothetical protein Ahy_Scaffold8g108431 [Arachis hypogaea] >RYR60310.1 hypothetical protein Ahy_A04g017389 [Arachis hypogaea])

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
          R+VVNLK+KI KSLKM MK  ++ Y  YDKMEKSESMRVEIRSRKA+KLI+ +LK ADSP
Sbjct: 6  RLVVNLKSKI-KSLKM-MKKASSYY--YDKMEKSESMRVEIRSRKARKLIEDTLKIADSP 65

Query: 64 -SSKTYAF 71
           SSKTY F
Sbjct: 66 KSSKTYTF 69

[Close]

BLAST of PI0029144.1 vs. NCBI nr
Match: THG07542.1 (hypothetical protein TEA_003531 [Camellia sinensis var. sinensis])

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 4   RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
           R+VVNLK+K ++SLK+K         DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP
Sbjct: 79  RLVVNLKSK-LRSLKLKK-------PDYDKIEKSESMRVEIRSRKARKLVEETLKIADSP 137

Query: 64  SSKTYAF 71
            S+TYAF
Sbjct: 139 KSRTYAF 137

[Close]

BLAST of PI0029144.1 vs. NCBI nr
Match: KAF5961406.1 (hypothetical protein HYC85_002615 [Camellia sinensis])

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 4  RVVVNLKAKIMKSLKMKMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP 63
          R+VVNLK+K ++SLK+K         DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP
Sbjct: 26 RLVVNLKSK-LRSLKLKK-------PDYDKIEKSESMRVEIRSRKARKLVEETLKIADSP 84

Query: 64 SSKTYAF 71
           S+TYAF
Sbjct: 86 KSRTYAF 84

The following BLAST results are available for this feature:

BLAST of PI0029144.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0029144.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7HLI3	2.9e-10	62.69	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015680 PE=4 SV=1	[more]
A0A445DAW0	6.5e-10	73.53	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g017389 PE=4 SV=1	[more]
A0A7J7IA61	8.4e-10	64.18	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_002615 PE=4 SV=1	[more]
A0A4S4DW15	8.4e-10	64.18	RNase H domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 G...	[more]
M1AMJ5	2.5e-09	59.70	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

BLAST of PI0029144.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036740.1	2.8e-15	84.85	hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TXG57851.1	6.0e-10	62.69	hypothetical protein EZV62_015680 [Acer yangbiense]	[more]
RYQ78961.1	1.3e-09	73.53	hypothetical protein Ahy_Scaffold8g108431 [Arachis hypogaea] >RYR60310.1 hypothe...	[more]
THG07542.1	1.7e-09	64.18	hypothetical protein TEA_003531 [Camellia sinensis var. sinensis]	[more]
KAF5961406.1	1.7e-09	64.18	hypothetical protein HYC85_002615 [Camellia sinensis]	[more]

BLAST of PI0029144.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563	BNACNNG33880D PROTEIN	coord: 4..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0029144	PI0029144	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0029144.1-exon	PI0029144.1-exon-chr06:16857983..16858612	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0029144.1-three_prime_utr	PI0029144.1-three_prime_utr-chr06:16857983..16858279	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0029144.1-cds	PI0029144.1-cds-chr06:16858280..16858492	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0029144.1-five_prime_utr	PI0029144.1-five_prime_utr-chr06:16858493..16858612	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0029144.1	PI0029144.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071277	cellular response to calcium ion
biological_process	GO:0009704	de-etiolation
biological_process	GO:0090333	regulation of stomatal closure
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity