PI0028772.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0028772.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr10: 10571566 .. 10572066 (-)
Sequence length	501
RNA-Seq Expression	PI0028772.1
Synteny	PI0028772.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGTGAAGCATTGGAGGTCATCGCCTGGCCTGGGGCGACATGGGAGATTATGCCTACTGGGAAATATCAACTTCACCCACACCAGCTGACTACTGAAGCAAATATGTGGCTGTTCTTCCTAAAAAAGAAGATATTTTCCACGCGCCATGACAATACCATCAACTTAGAATCTGCGATGCTACTGTACTGCATTCTGATGAAATGGCGCATGAACCTAGGTGATTTGATAGCTACCACCATCCTTTCTTGGATGCGAGCTCCCAAGGGTGCCATGCCCTTCCCATCCACTGTGGAGGCACTATGCGTGAAGGCCCATCCTTTTCTTTGCGTCGTCAACCAGATGCCCATTCCAGGTGGCCTATGCAGCCTAGTGGCTTTGAATCGCATGATTACTCTCCACGCCCACAAAGAAATGGAGAGGCGGTTAAAGACACTGGGCCAGGACAGAAAAAGAGGGCGAGACTCTAGTAGACTCCCACAAAGGAAAAGCCCCTAG

mRNA sequence

ATGGCCCGTGAAGCATTGGAGGTCATCGCCTGGCCTGGGGCGACATGGGAGATTATGCCTACTGGGAAATATCAACTTCACCCACACCAGCTGACTACTGAAGCAAATATGTGGCTGTTCTTCCTAAAAAAGAAGATATTTTCCACGCGCCATGACAATACCATCAACTTAGAATCTGCGATGCTACTGTACTGCATTCTGATGAAATGGCGCATGAACCTAGGTGATTTGATAGCTACCACCATCCTTTCTTGGATGCGAGCTCCCAAGGGTGCCATGCCCTTCCCATCCACTGTGGAGGCACTATGCGTGAAGGCCCATCCTTTTCTTTGCGTCGTCAACCAGATGCCCATTCCAGGTGGCCTATGCAGCCTAGTGGCTTTGAATCGCATGATTACTCTCCACGCCCACAAAGAAATGGAGAGGCGGTTAAAGACACTGGGCCAGGACAGAAAAAGAGGGCGAGACTCTAGTAGACTCCCACAAAGGAAAAGCCCCTAG

Coding sequence (CDS)

ATGGCCCGTGAAGCATTGGAGGTCATCGCCTGGCCTGGGGCGACATGGGAGATTATGCCTACTGGGAAATATCAACTTCACCCACACCAGCTGACTACTGAAGCAAATATGTGGCTGTTCTTCCTAAAAAAGAAGATATTTTCCACGCGCCATGACAATACCATCAACTTAGAATCTGCGATGCTACTGTACTGCATTCTGATGAAATGGCGCATGAACCTAGGTGATTTGATAGCTACCACCATCCTTTCTTGGATGCGAGCTCCCAAGGGTGCCATGCCCTTCCCATCCACTGTGGAGGCACTATGCGTGAAGGCCCATCCTTTTCTTTGCGTCGTCAACCAGATGCCCATTCCAGGTGGCCTATGCAGCCTAGTGGCTTTGAATCGCATGATTACTCTCCACGCCCACAAAGAAATGGAGAGGCGGTTAAAGACACTGGGCCAGGACAGAAAAAGAGGGCGAGACTCTAGTAGACTCCCACAAAGGAAAAGCCCCTAG

Protein sequence

MAREALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAMLLYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVKAHPFLCVVNQMPIPGGLCSLVALNRMITLHAHKEMERRLKTLGQDRKRGRDSSRLPQRKSP

Homology

[Close]

BLAST of PI0028772.1 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.4e-25
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 1   MAREALEVIAWPGATWEIMPTG-KYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLES 60
           +A+EAL+V+AWPG   E+ P   +YQL+PH LTT+AN+W+FF K KIF T +D+TI+++ 
Sbjct: 62  LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121

Query: 61  AMLLYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVKAHPFLCVVNQMPIP 120
            ++LYCI++K  +NL ++I   IL+WM  PK AMPFPS +E LC+K  P L    +  IP
Sbjct: 122 TVILYCIMIKKAINLDEIIKAAILTWMEIPKEAMPFPSLMEKLCLKFLPSLVRYPEKNIP 180

[Close]

BLAST of PI0028772.1 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.4e-24
Identity = 68/156 (43.59%), Postives = 94/156 (60.26%), Query Frame = 0


Query: 2    AREALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAM 61
            A++ +++I WP A     PT + QL PHQLT EAN+WLFF+KKKIF T HD+TI  E A+
Sbjct: 1266 AKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYAL 1325

Query: 62   LLYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVK-AHPFLCVVNQMPIPG 121
            +LYCI  K   NLG ++    LSWMR PK A PFP+TV+ LC+K        + Q+ + G
Sbjct: 1326 VLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTTVKKLCLKYLDEEPREIPQIDMVG 1385

Query: 122  GLCSLVALNRMITLHAHKEMERRLKTLGQDRKRGRD 157
            G C+L     + T      ++R+  T G +   G+D
Sbjct: 1386 GKCNL----DIDTSPPPSLLKRKASTSGVEVNLGQD 1417

[Close]

BLAST of PI0028772.1 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.4e-24
Identity = 68/156 (43.59%), Postives = 94/156 (60.26%), Query Frame = 0


Query: 2   AREALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAM 61
           A++ +++I WP A     PT + QL PHQLT EAN+WLFF+KKKIF T HD+TI  E A+
Sbjct: 105 AKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYAL 164

Query: 62  LLYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVK-AHPFLCVVNQMPIPG 121
           +LYCI  K   NLG ++    LSWMR PK A PFP+TV+ LC+K        + Q+ + G
Sbjct: 165 VLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTTVKKLCLKYLDEEPREIPQIDMVG 224

Query: 122 GLCSLVALNRMITLHAHKEMERRLKTLGQDRKRGRD 157
           G C+L     + T      ++R+  T G +   G+D
Sbjct: 225 GKCNL----DIDTSPPPSLLKRKASTSGVEVNLGQD 256

[Close]

BLAST of PI0028772.1 vs. ExPASy TrEMBL
Match: A0A5D3CW17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00800 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-22
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 3   REALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAML 62
           ++ALE I WPG  W+ MPT KYQL P+ L TE ++WL F+KK I  TRHD+TI++E  ML
Sbjct: 117 QDALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIML 176

Query: 63  LYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVKAHPFLCVVNQMPIPGGL 122
           LY      + N  ++    +++W++ P GA PF    + L +KA+P L    Q+ +  G+
Sbjct: 177 LYYNGDSNQFN--EISCEHLIAWVKHPCGAKPFLCLTKQLYIKAYPELEKSQQVQVSNGV 236

Query: 123 CSLVALNRMITLHAHKEMERRLK 146
           C    L+R IT+H +K   R L+
Sbjct: 237 CIGPTLHRFITIHKNKTKLRHLQ 257

[Close]

BLAST of PI0028772.1 vs. ExPASy TrEMBL
Match: A0A5D3DVQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00370 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.0e-21
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 3   REALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAML 62
           +EALE +AW    W++    KY+L  H LTTEA++WL F+KKK+  TRHDNTI+ E  ML
Sbjct: 167 QEALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIML 226

Query: 63  LYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVKA 107
           LYCI+ +  +++ ++I   I +W++ P+GA PFP  +E LC+++
Sbjct: 227 LYCIMEEIPVDVDEIICDHIKAWVQHPRGAKPFPHLIERLCLRS 270

[Close]

BLAST of PI0028772.1 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 9.2e-25
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 1   MAREALEVIAWPGATWEIMPTG-KYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLES 60
           +A+EAL+V+AWPG   E+ P   +YQL+PH LTT+AN+W+FF K KIF T +D+TI+++ 
Sbjct: 62  LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121

Query: 61  AMLLYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVKAHPFLCVVNQMPIP 120
            ++LYCI++K  +NL ++I   IL+WM  PK AMPFPS +E LC+K  P L    +  IP
Sbjct: 122 TVILYCIMIKKAINLDEIIKAAILTWMEIPKEAMPFPSLMEKLCLKFLPSLVRYPEKNIP 180

[Close]

BLAST of PI0028772.1 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 68/156 (43.59%), Postives = 94/156 (60.26%), Query Frame = 0


Query: 2    AREALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAM 61
            A++ +++I WP A     PT + QL PHQLT EAN+WLFF+KKKIF T HD+TI  E A+
Sbjct: 1266 AKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYAL 1325

Query: 62   LLYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVK-AHPFLCVVNQMPIPG 121
            +LYCI  K   NLG ++    LSWMR PK A PFP+TV+ LC+K        + Q+ + G
Sbjct: 1326 VLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTTVKKLCLKYLDEEPREIPQIDMVG 1385

Query: 122  GLCSLVALNRMITLHAHKEMERRLKTLGQDRKRGRD 157
            G C+L     + T      ++R+  T G +   G+D
Sbjct: 1386 GKCNL----DIDTSPPPSLLKRKASTSGVEVNLGQD 1417

[Close]

BLAST of PI0028772.1 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 68/156 (43.59%), Postives = 94/156 (60.26%), Query Frame = 0


Query: 2   AREALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAM 61
           A++ +++I WP A     PT + QL PHQLT EAN+WLFF+KKKIF T HD+TI  E A+
Sbjct: 105 AKKIIKLIVWPEADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYAL 164

Query: 62  LLYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVK-AHPFLCVVNQMPIPG 121
           +LYCI  K   NLG ++    LSWMR PK A PFP+TV+ LC+K        + Q+ + G
Sbjct: 165 VLYCINAKKPFNLGYVMNEAFLSWMRNPKNAKPFPTTVKKLCLKYLDEEPREIPQIDMVG 224

Query: 122 GLCSLVALNRMITLHAHKEMERRLKTLGQDRKRGRD 157
           G C+L     + T      ++R+  T G +   G+D
Sbjct: 225 GKCNL----DIDTSPPPSLLKRKASTSGVEVNLGQD 256

[Close]

BLAST of PI0028772.1 vs. NCBI nr
Match: KAA0041264.1 (hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK16063.1 hypothetical protein E5676_scaffold32G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 5.6e-22
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 3   REALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAML 62
           ++ALE I WPG  W+ MPT KYQL P+ L TE ++WL F+KK I  TRHD+TI++E  ML
Sbjct: 117 QDALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIML 176

Query: 63  LYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVKAHPFLCVVNQMPIPGGL 122
           LY      + N  ++    +++W++ P GA PF    + L +KA+P L    Q+ +  G+
Sbjct: 177 LYYNGDSNQFN--EISCEHLIAWVKHPCGAKPFLCLTKQLYIKAYPELEKSQQVQVSNGV 236

Query: 123 CSLVALNRMITLHAHKEMERRLK 146
           C    L+R IT+H +K   R L+
Sbjct: 237 CIGPTLHRFITIHKNKTKLRHLQ 257

[Close]

BLAST of PI0028772.1 vs. NCBI nr
Match: KAA0054837.1 (hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK27771.1 hypothetical protein E5676_scaffold1142G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-21
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 3   REALEVIAWPGATWEIMPTGKYQLHPHQLTTEANMWLFFLKKKIFSTRHDNTINLESAML 62
           +EALE +AW    W++    KY+L  H LTTEA++WL F+KKK+  TRHDNTI+ E  ML
Sbjct: 167 QEALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIML 226

Query: 63  LYCILMKWRMNLGDLIATTILSWMRAPKGAMPFPSTVEALCVKA 107
           LYCI+ +  +++ ++I   I +W++ P+GA PFP  +E LC+++
Sbjct: 227 LYCIMEEIPVDVDEIICDHIKAWVQHPRGAKPFPHLIERLCLRS 270

The following BLAST results are available for this feature:

BLAST of PI0028772.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028772.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M5	4.4e-25	50.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5A7U806	6.4e-24	43.59	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE...	[more]
A0A5D3CVL7	6.4e-24	43.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CW17	2.7e-22	41.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DVQ6	3.0e-21	46.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0028772.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062900.1	9.2e-25	50.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0049609.1	1.3e-23	43.59	transposase [Cucumis melo var. makuwa]	[more]
TYK15967.1	1.3e-23	43.59	hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]	[more]
KAA0041264.1	5.6e-22	41.26	hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK160...	[more]
KAA0054837.1	6.1e-21	46.15	hypothetical protein E6C27_scaffold406G00150 [Cucumis melo var. makuwa] >TYK2777...	[more]

BLAST of PI0028772.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..166

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0028772	PI0028772	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028772.1-exon	PI0028772.1-exon-chr10:10571566..10572066	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028772.1-cds	PI0028772.1-cds-chr10:10571566..10572066	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0028772.1	PI0028772.1-protein	polypeptide