PI0028268.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0028268.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 19762480 .. 19762938 (+)
Sequence length	459
RNA-Seq Expression	PI0028268.1
Synteny	PI0028268.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATAAAGATTTGGGCGATTTGTTAGGATCGCTTGTGTGTAAGCCAGTTTTTTATTACTTTGATCAAGTCCTGGCTCACCAAGTTGATCAGGCGATGCAACTCCAAGCCTTGAAGACCTCAGTTGATCAGTTGCAACGCCCTGCCCCCGAAACCCTTGTGATGCCCGCCTCTCAAGAAGAAGTCAGTACTTTGAGGAGCGAACTAAAGGATCTTTCGGTGAACAACGCTCAACTCTCCACTGCCGTATCCAACCTCACATCCTTGGTCATTGCGCAATTGAAGATGATGAGGCATATAGCTGCACGACATGATCGGAAATTTCGCACACAAATGGAGTACACTTACGCAGCCATTGTTCAACGCGTGCCAGCACCGATCATACCGCCAGATCTAGAAGCACCCTTTCTGCCACTCACGCATCTTGGTGATCCTGAACCTCGCCAAGACAATTAA

mRNA sequence

ATGGAAGATAAAGATTTGGGCGATTTGTTAGGATCGCTTGTGTGTAAGCCAGTTTTTTATTACTTTGATCAAGTCCTGGCTCACCAAGTTGATCAGGCGATGCAACTCCAAGCCTTGAAGACCTCAGTTGATCAGTTGCAACGCCCTGCCCCCGAAACCCTTGTGATGCCCGCCTCTCAAGAAGAAGTCAGTACTTTGAGGAGCGAACTAAAGGATCTTTCGGTGAACAACGCTCAACTCTCCACTGCCGTATCCAACCTCACATCCTTGGTCATTGCGCAATTGAAGATGATGAGGCATATAGCTGCACGACATGATCGGAAATTTCGCACACAAATGGAGTACACTTACGCAGCCATTGTTCAACGCGTGCCAGCACCGATCATACCGCCAGATCTAGAAGCACCCTTTCTGCCACTCACGCATCTTGGTGATCCTGAACCTCGCCAAGACAATTAA

Coding sequence (CDS)

ATGGAAGATAAAGATTTGGGCGATTTGTTAGGATCGCTTGTGTGTAAGCCAGTTTTTTATTACTTTGATCAAGTCCTGGCTCACCAAGTTGATCAGGCGATGCAACTCCAAGCCTTGAAGACCTCAGTTGATCAGTTGCAACGCCCTGCCCCCGAAACCCTTGTGATGCCCGCCTCTCAAGAAGAAGTCAGTACTTTGAGGAGCGAACTAAAGGATCTTTCGGTGAACAACGCTCAACTCTCCACTGCCGTATCCAACCTCACATCCTTGGTCATTGCGCAATTGAAGATGATGAGGCATATAGCTGCACGACATGATCGGAAATTTCGCACACAAATGGAGTACACTTACGCAGCCATTGTTCAACGCGTGCCAGCACCGATCATACCGCCAGATCTAGAAGCACCCTTTCTGCCACTCACGCATCTTGGTGATCCTGAACCTCGCCAAGACAATTAA

Protein sequence

MEDKDLGDLLGSLVCKPVFYYFDQVLAHQVDQAMQLQALKTSVDQLQRPAPETLVMPASQEEVSTLRSELKDLSVNNAQLSTAVSNLTSLVIAQLKMMRHIAARHDRKFRTQMEYTYAAIVQRVPAPIIPPDLEAPFLPLTHLGDPEPRQDN

Homology

[Close]

BLAST of PI0028268.1 vs. ExPASy TrEMBL
Match: A0A5D3DYE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00280 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.0e-15
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 2   EDKDLGDLLGSLVCKPVFYYFDQVLAHQVDQAMQLQALKTSVDQLQRPAPETLVMPASQE 61
           E KD+ D +GS V K  F YF+QVL  Q   +M+  A+ T ++++Q    +   +   Q+
Sbjct: 185 EGKDIYDFIGSTVAKRTFDYFEQVLYEQTINSMKHDAMTTLMEKVQVENSKLKQLLTEQQ 244

Query: 62  EVSTLRSELKDLSVNNAQLSTAVSNLTSLVIAQLKMMRHIAARHDRKFRTQMEYTYAAIV 121
           +      ++  +  N  QLS+ VSNLT +VI   +M   +  + D++F+  +EYT+A   
Sbjct: 245 K------QVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFA 304

Query: 122 QRVPAPIIPPDLEA--PFLPLTHLGDPEPRQDN 153
           QR+P+P I P++E+  P +   +LG P+P QDN
Sbjct: 305 QRMPSPFISPEIESLYPLIQPVNLGYPDPHQDN 331

[Close]

BLAST of PI0028268.1 vs. ExPASy TrEMBL
Match: A0A5A7VF20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00430 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.0e-15
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 2   EDKDLGDLLGSLVCKPVFYYFDQVLAHQVDQAMQLQALKTSVDQLQRPAPETLVMPASQE 61
           E KD+ D +GS V K  F YF+QVL  Q   +M+  A+ T ++++Q    +   +   Q+
Sbjct: 265 EGKDIYDFIGSTVAKRTFDYFEQVLYEQTINSMKHDAMTTLMEKVQVENSKLKQLLTEQQ 324

Query: 62  EVSTLRSELKDLSVNNAQLSTAVSNLTSLVIAQLKMMRHIAARHDRKFRTQMEYTYAAIV 121
           +      ++  +  N  QLS+ VSNLT +VI   +M   +  + D++F+  +EYT+A   
Sbjct: 325 K------QVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFA 384

Query: 122 QRVPAPIIPPDLEA--PFLPLTHLGDPEPRQDN 153
           QR+P+P I P++E+  P +   +LG P+P QDN
Sbjct: 385 QRMPSPFISPEIESLYPLIQPVNLGYPDPHQDN 411

[Close]

BLAST of PI0028268.1 vs. ExPASy TrEMBL
Match: A0A5D3CT45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001110 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-06
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 95  LKMMRHIAARHDRKFRTQMEYTYAAIVQRVPAPIIPPDLEAPFLPLTHL-GDPEPRQDN 153
           L+M   +  R DRKF+  MEYT+A  VQRVP P+IP +LE PF P+    G P+PRQ++
Sbjct: 143 LEMQVKMGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPFPPIHQAPGTPKPRQED 201

[Close]

BLAST of PI0028268.1 vs. ExPASy TrEMBL
Match: A0A5A7UH00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001880 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 57  PASQEEVSTLRSELKDLSVNNAQLSTAVSNLTSLVIAQLKMMRHIAARHDRKFRTQMEYT 116
           P  +   STL   +K L V+    +T      S      K+M     R DRKF+  MEYT
Sbjct: 58  PLKRNAKSTLTPPVKKLKVD----ATVEKASASKPPHSKKVM---GERRDRKFQASMEYT 117

Query: 117 YAAIVQRVPAPIIPPDLEAPFLPLTHL-GDPEPRQDN 153
           +A  VQRVP P+IP +LE PF P+    G P+PRQ++
Sbjct: 118 HAIFVQRVPQPVIPQELETPFPPIHQAPGTPKPRQED 147

[Close]

BLAST of PI0028268.1 vs. NCBI nr
Match: KAA0064129.1 (uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-14
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 2   EDKDLGDLLGSLVCKPVFYYFDQVLAHQVDQAMQLQALKTSVDQLQRPAPETLVMPASQE 61
           E KD+ D +GS V K  F YF+QVL  Q   +M+  A+ T ++++Q    +   +   Q+
Sbjct: 265 EGKDIYDFIGSTVAKRTFDYFEQVLYEQTINSMKHDAMTTLMEKVQVENSKLKQLLTEQQ 324

Query: 62  EVSTLRSELKDLSVNNAQLSTAVSNLTSLVIAQLKMMRHIAARHDRKFRTQMEYTYAAIV 121
           +      ++  +  N  QLS+ VSNLT +VI   +M   +  + D++F+  +EYT+A   
Sbjct: 325 K------QVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFA 384

Query: 122 QRVPAPIIPPDLEA--PFLPLTHLGDPEPRQDN 153
           QR+P+P I P++E+  P +   +LG P+P QDN
Sbjct: 385 QRMPSPFISPEIESLYPLIQPVNLGYPDPHQDN 411

[Close]

BLAST of PI0028268.1 vs. NCBI nr
Match: TYK28611.1 (hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-14
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 0


Query: 2   EDKDLGDLLGSLVCKPVFYYFDQVLAHQVDQAMQLQALKTSVDQLQRPAPETLVMPASQE 61
           E KD+ D +GS V K  F YF+QVL  Q   +M+  A+ T ++++Q    +   +   Q+
Sbjct: 185 EGKDIYDFIGSTVAKRTFDYFEQVLYEQTINSMKHDAMTTLMEKVQVENSKLKQLLTEQQ 244

Query: 62  EVSTLRSELKDLSVNNAQLSTAVSNLTSLVIAQLKMMRHIAARHDRKFRTQMEYTYAAIV 121
           +      ++  +  N  QLS+ VSNLT +VI   +M   +  + D++F+  +EYT+A   
Sbjct: 245 K------QVAKIMANQDQLSSTVSNLTCVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFA 304

Query: 122 QRVPAPIIPPDLEA--PFLPLTHLGDPEPRQDN 153
           QR+P+P I P++E+  P +   +LG P+P QDN
Sbjct: 305 QRMPSPFISPEIESLYPLIQPVNLGYPDPHQDN 331

[Close]

BLAST of PI0028268.1 vs. NCBI nr
Match: TYK14602.1 (hypothetical protein E5676_scaffold552G001110 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 95  LKMMRHIAARHDRKFRTQMEYTYAAIVQRVPAPIIPPDLEAPFLPLTHL-GDPEPRQDN 153
           L+M   +  R DRKF+  MEYT+A  VQRVP P+IP +LE PF P+    G P+PRQ++
Sbjct: 143 LEMQVKMGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPFPPIHQAPGTPKPRQED 201

[Close]

BLAST of PI0028268.1 vs. NCBI nr
Match: KAA0054434.1 (hypothetical protein E6C27_scaffold24G001880 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-04
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 57  PASQEEVSTLRSELKDLSVNNAQLSTAVSNLTSLVIAQLKMMRHIAARHDRKFRTQMEYT 116
           P  +   STL   +K L V+    +T      S      K+M     R DRKF+  MEYT
Sbjct: 58  PLKRNAKSTLTPPVKKLKVD----ATVEKASASKPPHSKKVM---GERRDRKFQASMEYT 117

Query: 117 YAAIVQRVPAPIIPPDLEAPFLPLTHL-GDPEPRQDN 153
           +A  VQRVP P+IP +LE PF P+    G P+PRQ++
Sbjct: 118 HAIFVQRVPQPVIPQELETPFPPIHQAPGTPKPRQED 147

The following BLAST results are available for this feature:

BLAST of PI0028268.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028268.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYE2	5.0e-15	34.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VF20	5.0e-15	34.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CT45	5.5e-06	50.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UH00	1.4e-04	40.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0028268.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064129.1	1.0e-14	34.64	uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa]	[more]
TYK28611.1	1.0e-14	34.64	hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa]	[more]
TYK14602.1	1.1e-05	50.85	hypothetical protein E5676_scaffold552G001110 [Cucumis melo var. makuwa]	[more]
KAA0054434.1	2.8e-04	40.21	hypothetical protein E6C27_scaffold24G001880 [Cucumis melo var. makuwa]	[more]

BLAST of PI0028268.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0028268	PI0028268	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028268.1-exon	PI0028268.1-exon-chr06:19762480..19762938	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028268.1-cds	PI0028268.1-cds-chr06:19762480..19762938	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0028268.1	PI0028268.1-protein	polypeptide