PI0026740.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0026740.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr03: 25864962 .. 25865562 (-)
Sequence length198
RNA-Seq ExpressionPI0026740.1
SyntenyPI0026740.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTGCTGTTTCTTCTCAATTCAAACCCCTTTGGATCATCCAACCTTGTTCATCACTCCGTTTTCGTCAACAAAGATCTGTTGCTGGATTCTGGATTCTGGTTTCGTTTTTCTCATCCCACACCGCTATTACACTCTTCTCAATTCTCATCCTCTTCAATCCTGTATGCTCTTTCTTTTTCTTTCTCTTTCTCTTTCCTTTCTGTTCATCCTTCTTTGATGATATTAAATCATCGACGATTTTTTTGTATTTTGTATTTTGTATTTGTATCATGTTTAAGGTTTTTGGAAATGGAAGTGGAGTAGTTTGATATTTAGTTATGTGTGTGAGTGATGATTCTAGTGAGAGAAATTCACTTTGACTAACCCTCGTTTTTATGCCGAGGCGTTGATGGTGCTGTTCTTTATGACGTTGAGAAGTTTTGTTTCTGTACTCTGCTTGGAGTTTAATCTAATTGGAATGGTATTTGTTGAACTTGCTAAGATTTCTTTCCCCATAGATATGGTTGGATTACTTCTTTGTTTTATTTTGCATCAACTCTTTCCATTGTGTCAATCGTTTTGCAGGCTCTTGAATGCTAAATTTGAGAGGTTCTGA

mRNA sequence

ATGTTTCTGCTGTTTCTTCTCAATTCAAACCCCTTTGGATCATCCAACCTTGTTCATCACTCCGTTTTCGTCAACAAAGATCTGTTGCTGGATTCTGGATTCTGGTTTCGTTTTTCTCATCCCACACCGCTATTACACTCTTCTCAATTCTCATCCTCTTCAATCCTGCTCTTGAATGCTAAATTTGAGAGGTTCTGA

Coding sequence (CDS)

ATGTTTCTGCTGTTTCTTCTCAATTCAAACCCCTTTGGATCATCCAACCTTGTTCATCACTCCGTTTTCGTCAACAAAGATCTGTTGCTGGATTCTGGATTCTGGTTTCGTTTTTCTCATCCCACACCGCTATTACACTCTTCTCAATTCTCATCCTCTTCAATCCTGCTCTTGAATGCTAAATTTGAGAGGTTCTGA

Protein sequence

MFLLFLLNSNPFGSSNLVHHSVFVNKDLLLDSGFWFRFSHPTPLLHSSQFSSSSILLLNAKFERF
Homology
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BLAST of PI0026740.1 vs. NCBI nr
Match: KAG7015916.1 (hypothetical protein SDJN02_21020, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 2.7e-04
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 5  FLLNSNPFGSSNLVHHSVFVNKDLLLDSGFWFRFSHPTPLLHSSQFSSSSILL 58
          FLLNS+ F SS +V HSV V  D  LD+GFW RF HP  LL ++QF    + L
Sbjct: 36 FLLNSSAFRSSKVVRHSVLVKNDPFLDAGFWIRFCHPRRLL-NAQFERDDLKL 87

The following BLAST results are available for this feature:
BLAST of PI0026740.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0026740.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0026740.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015916.12.7e-0452.83hypothetical protein SDJN02_21020, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of PI0026740.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0026740PI0026740gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0026740.1-exonPI0026740.1-exon-chr03:25864962..25864992exon
PI0026740.1-exonPI0026740.1-exon-chr03:25865396..25865562exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0026740.1-cdsPI0026740.1-cds-chr03:25864962..25864992CDS
PI0026740.1-cdsPI0026740.1-cds-chr03:25865396..25865562CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0026740.1PI0026740.1-proteinpolypeptide