PI0025948.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0025948.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr09: 17662702 .. 17663307 (+)
Sequence length	606
RNA-Seq Expression	PI0025948.1
Synteny	PI0025948.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAACCACAATTTGACCTTCAAATTAACCGCACCCTCTCAACCAATTTCACACATCCAATCCATCACAGCCCATGGCGATTCTGTTCAACAAGTTTTCAACGATCGCGGAGTCGCTGTTGATCGATTTAATTTTGTGCTCCATTTTGACAACCATGGTCGCCGCCACCAACGAGCAACTCCTCAATGTCGCGAACACAAACGTCATTACGGCAACAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAACACCATGTTCCGGACCTAGTGGTTGAGAATATTAATTCCTTTTCCGCTGCACCTAAATCTGCCCCGTCACCATCCCCATCCCCATCACCGTCGCCATTGGGCTGAGGAATTCGAACCATTGTTTAATGACTCAACAACTGTTTTTCCTTTTTAATCTATTTACAAATTACGTGTTTGTGTGATTTAAAATTTGGTTTCATTTTGCAAAATCTACCATTATGCTTTTGAACATTCAAGTCGTTAATGTGGTTGTGATATATATAGAAAAATTTATAGAATTAACCAATTTTTCACCAATTGTTTTTTATCATTATCCTAATTGAAACACAA

mRNA sequence

AACAAAACCACAATTTGACCTTCAAATTAACCGCACCCTCTCAACCAATTTCACACATCCAATCCATCACAGCCCATGGCGATTCTGTTCAACAAGTTTTCAACGATCGCGGAGTCGCTGTTGATCGATTTAATTTTGTGCTCCATTTTGACAACCATGGTCGCCGCCACCAACGAGCAACTCCTCAATGTCGCGAACACAAACGTCATTACGGCAACAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAACACCATGTTCCGGACCTAGTGGTTGAGAATATTAATTCCTTTTCCGCTGCACCTAAATCTGCCCCGTCACCATCCCCATCCCCATCACCGTCGCCATTGGGCTGAGGAATTCGAACCATTGTTTAATGACTCAACAACTGTTTTTCCTTTTTAATCTATTTACAAATTACGTGTTTGTGTGATTTAAAATTTGGTTTCATTTTGCAAAATCTACCATTATGCTTTTGAACATTCAAGTCGTTAATGTGGTTGTGATATATATAGAAAAATTTATAGAATTAACCAATTTTTCACCAATTGTTTTTTATCATTATCCTAATTGAAACACAA

Coding sequence (CDS)

ATGGCGATTCTGTTCAACAAGTTTTCAACGATCGCGGAGTCGCTGTTGATCGATTTAATTTTGTGCTCCATTTTGACAACCATGGTCGCCGCCACCAACGAGCAACTCCTCAATGTCGCGAACACAAACGTCATTACGGCAACAGCTGCAGAGTATCAAGCATTCGATATTGGAAAGCCGCTTTACAGGATTAAAGAACAACACCATGTTCCGGACCTAGTGGTTGAGAATATTAATTCCTTTTCCGCTGCACCTAAATCTGCCCCGTCACCATCCCCATCCCCATCACCGTCGCCATTGGGCTGA

Protein sequence

MAILFNKFSTIAESLLIDLILCSILTTMVAATNEQLLNVANTNVITATAAEYQAFDIGKPLYRIKEQHHVPDLVVENINSFSAAPKSAPSPSPSPSPSPLG

Homology

[Close]

BLAST of PI0025948.1 vs. ExPASy TrEMBL
Match: A0A5D3C3F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002250 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-34
Identity = 83/97 (85.57%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MAILFNKFSTIAESLLIDLILCSILTTMVAATNEQLLNVANTNVITATAAEYQAFDIGKP 60
          MAI FNKFSTIA +LLI LILCSIL+T VAA+NEQLLNVANTNVITA+AAEYQAFDIGKP
Sbjct: 1  MAIHFNKFSTIAAALLIHLILCSILSTTVAASNEQLLNVANTNVITASAAEYQAFDIGKP 60

Query: 61 LYRIKEQHHVPDLVVENINSFSAAPKSAPSPSPSPSP 98
          LYR+KEQ+HVPDLVVEN++S S+APKSAPSPSPSPSP
Sbjct: 61 LYRVKEQYHVPDLVVENLDSISSAPKSAPSPSPSPSP 97

[Close]

BLAST of PI0025948.1 vs. ExPASy TrEMBL
Match: A0A0A0KNL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497040 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.9e-32
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MAILFNKFSTIAESLLIDLILCSILTTMVAATNEQLLNVANT-NVITATAAEYQAFDIGK 60
           MAILFNKFSTI  +LLI  ILCSI +TM AATNEQLLNVAN  N ITA+AAEYQAFDIGK
Sbjct: 1   MAILFNKFSTIPAALLIHFILCSIFSTMFAATNEQLLNVANAKNGITASAAEYQAFDIGK 60

Query: 61  PLYRIKEQHHVPDLVVENINSFSAAPKSAPSPSPSPSPSPLG 102
           PLYRIKEQ+HVPDLVVENI+S S+AP SAPSPSPSPS SPLG
Sbjct: 61  PLYRIKEQYHVPDLVVENIDSISSAPSSAPSPSPSPSRSPLG 102

[Close]

BLAST of PI0025948.1 vs. NCBI nr
Match: TYK05738.1 (hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 6.6e-34
Identity = 83/97 (85.57%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MAILFNKFSTIAESLLIDLILCSILTTMVAATNEQLLNVANTNVITATAAEYQAFDIGKP 60
          MAI FNKFSTIA +LLI LILCSIL+T VAA+NEQLLNVANTNVITA+AAEYQAFDIGKP
Sbjct: 1  MAIHFNKFSTIAAALLIHLILCSILSTTVAASNEQLLNVANTNVITASAAEYQAFDIGKP 60

Query: 61 LYRIKEQHHVPDLVVENINSFSAAPKSAPSPSPSPSP 98
          LYR+KEQ+HVPDLVVEN++S S+APKSAPSPSPSPSP
Sbjct: 61 LYRVKEQYHVPDLVVENLDSISSAPKSAPSPSPSPSP 97

The following BLAST results are available for this feature:

BLAST of PI0025948.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025948.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3F2	3.2e-34	85.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KNL8	3.9e-32	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497040 PE=4 SV=1	[more]

BLAST of PI0025948.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05738.1	6.6e-34	85.57	hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa]	[more]

BLAST of PI0025948.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0025948	PI0025948	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025948.1-five_prime_utr	PI0025948.1-five_prime_utr-chr09:17662702..17662776	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025948.1-exon	PI0025948.1-exon-chr09:17662702..17663307	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025948.1-cds	PI0025948.1-cds-chr09:17662777..17663082	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025948.1-three_prime_utr	PI0025948.1-three_prime_utr-chr09:17663083..17663307	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0025948.1	PI0025948.1-protein	polypeptide