PI0025899.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0025899.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	chr12: 16454580 .. 16455218 (+)
Sequence length	639
RNA-Seq Expression	PI0025899.1
Synteny	PI0025899.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCTTCCCATTTTTATTAATATATATATACATAATATCTTACAATGATAAATATAGCATTTGATTTTTTTCCCTATTCCTTGTTCATTTCATTTCATCTTTCCTCTCTCTCTCTTTCTACTCCACTTTATTGAAGAGCTCTAAATCATGGGTCGAAGTTTCAACAATTCAAAGTCAGAATCAATATCACAAGATCTATCATTAGCAATATCTAATTCAACAACCGAAGATCCCTCAACAGCAGTCATGGTGCTATTAGGATGTACTCGATGCCTCATGTACATCATGTCATCTAAGTTAGATCTTAAATGTCCTAAATGTAACAACACTACGCTACTTGATATATTTAATCTAACCAATCAAGGATCTCGAGGAAGTTTTGTCGATATGTCACCTGATGTTGCTAAATGAGAAGAGGTTCGTCGACAAGTCGTCGATTATTGTACTTAATTACCTTTATTCAATCTTGAGCTTTCCTTTCTTAATTCTTCTTTTGTTTGACTTATTCTAGTTCGGTAGCTCCTTTTTTTCAATTCACTTTGATCATTTGCTATTAGTTTTTATCATGTTACTGTGCCAATTTCATAGTATATTTGCTTCTTTTGAAAGTAATAATCCATGAACACCTTTCTATATA

mRNA sequence

TTTCTCTTCCCATTTTTATTAATATATATATACATAATATCTTACAATGATAAATATAGCATTTGATTTTTTTCCCTATTCCTTGTTCATTTCATTTCATCTTTCCTCTCTCTCTCTTTCTACTCCACTTTATTGAAGAGCTCTAAATCATGGGTCGAAGTTTCAACAATTCAAAGTCAGAATCAATATCACAAGATCTATCATTAGCAATATCTAATTCAACAACCGAAGATCCCTCAACAGCAGTCATGGTGCTATTAGGATGTACTCGATGCCTCATGTACATCATGTCATCTAAGTTAGATCTTAAATGTCCTAAATGTAACAACACTACGCTACTTGATATATTTAATCTAACCAATCAAGGATCTCGAGGAAGTTTTGTCGATATGTCACCTGATGTTGCTAAATGAGAAGAGGTTCGTCGACAAGTCGTCGATTATTGTACTTAATTACCTTTATTCAATCTTGAGCTTTCCTTTCTTAATTCTTCTTTTGTTTGACTTATTCTAGTTCGGTAGCTCCTTTTTTTCAATTCACTTTGATCATTTGCTATTAGTTTTTATCATGTTACTGTGCCAATTTCATAGTATATTTGCTTCTTTTGAAAGTAATAATCCATGAACACCTTTCTATATA

Coding sequence (CDS)

ATGGGTCGAAGTTTCAACAATTCAAAGTCAGAATCAATATCACAAGATCTATCATTAGCAATATCTAATTCAACAACCGAAGATCCCTCAACAGCAGTCATGGTGCTATTAGGATGTACTCGATGCCTCATGTACATCATGTCATCTAAGTTAGATCTTAAATGTCCTAAATGTAACAACACTACGCTACTTGATATATTTAATCTAACCAATCAAGGATCTCGAGGAAGTTTTGTCGATATGTCACCTGATGTTGCTAAATGA

Protein sequence

MGRSFNNSKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQGSRGSFVDMSPDVAK

Homology

[Close]

BLAST of PI0025899.1 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-06
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 1   MGRSFNNSKSESISQDLSLAISNSTTED---------PSTAVMVLLGCTRCLMYIMSSKL 60
           M RS + S + S +   S  +S+   +D         P T  MVL+GC RCLMY+M S+ 
Sbjct: 24  MVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSED 83

Query: 61  DLKCPKCNNTTLLDIF--NLTNQGSRGS 78
           D KCPKC +T LLD    N TN  +  +
Sbjct: 84  DPKCPKCKSTVLLDFLHENATNANANAA 111

[Close]

BLAST of PI0025899.1 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-05
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 4  SFNNSKSESISQDLSLAISNSTTEDPSTAV--MVLLGCTRCLMYIMSSKLDLKCPKCNNT 63
          S   S + S +   S  +S+ T ++ +  +  MVL+GC RCLMY+M S  D KCPKC +T
Sbjct: 28 SLVRSPNRSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKST 87

Query: 64 TLLD 66
           LLD
Sbjct: 88 VLLD 91

[Close]

BLAST of PI0025899.1 vs. ExPASy TrEMBL
Match: B7FH31 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0267071 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 8   SKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S + +  P    M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 31  TRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90

Query: 68  NLTNQGSRGS 78
           N  N  ++ S
Sbjct: 91  NAENNNNKKS 100

[Close]

BLAST of PI0025899.1 vs. ExPASy TrEMBL
Match: A0A072U397 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 8   SKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S + +  P    M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 44  TRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 103

Query: 68  NLTNQGSRGS 78
           N  N  ++ S
Sbjct: 104 NAENNNNKKS 113

[Close]

BLAST of PI0025899.1 vs. ExPASy TrEMBL
Match: A0A2Z6M630 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_340120 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-06
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 3  RSFNNSKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTT 62
          R  + ++S S+S   S   S + +  P    M+L+GC RCLMY+M S+ D KCPKC++T 
Sbjct: 26 RESSPTRSASVSSPSSCVSSENGSNSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTV 85

Query: 63 LLDIFNLTNQGS 75
          LLD  N  N  +
Sbjct: 86 LLDFLNTENNNN 97

[Close]

BLAST of PI0025899.1 vs. ExPASy TrEMBL
Match: A0A1S2XTG6 (uncharacterized protein LOC101497048 OS=Cicer arietinum OX=3827 GN=LOC101497048 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 8  SKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
          ++S S+S   S   S +    P    MVL+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 31 TRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90

Query: 68 NLTNQGS 75
           L N  +
Sbjct: 91 KLDNNNN 97

[Close]

BLAST of PI0025899.1 vs. ExPASy TrEMBL
Match: A0A2K3MC92 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g044492 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-06
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 8   SKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S + +  P    M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 47  TRSASVSPPSSCVSSENGSNSPEAISMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 106

Query: 68  NLTNQGS 75
           N  N  +
Sbjct: 107 NTENNNN 113

[Close]

BLAST of PI0025899.1 vs. NCBI nr
Match: KAG6583700.1 (hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019351.1 hypothetical protein SDJN02_18311 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 8.8e-19
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 22 SNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIFNLTNQGSRGSFVDM 81
          S+S TED +T+VMVLLGCT+CLMY+MSSK DLKCPKCNNTTLLD+ NL NQ S+ + VDM
Sbjct: 18 SSSKTEDATTSVMVLLGCTQCLMYVMSSKFDLKCPKCNNTTLLDVHNLANQASKKNLVDM 77

Query: 82 SPDVAK 88
          S DVAK
Sbjct: 78 SIDVAK 83

[Close]

BLAST of PI0025899.1 vs. NCBI nr
Match: XP_013450169.2 (protein GL2-INTERACTING REPRESSOR 1 [Medicago truncatula] >ACJ84060.1 unknown [Medicago truncatula] >AFK39340.1 unknown [Medicago truncatula] >RHN48747.1 hypothetical protein MtrunA17_Chr7g0267071 [Medicago truncatula])

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-06
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 8   SKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S + +  P    M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 31  TRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90

Query: 68  NLTNQGSRGS 78
           N  N  ++ S
Sbjct: 91  NAENNNNKKS 100

[Close]

BLAST of PI0025899.1 vs. NCBI nr
Match: XP_010683626.1 (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-06
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1   MGRSFNNSKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNN 60
           M R+ + S+S S+S   S   S  +   P T  MVL+GC RCLMY+M S+ D KCPKC +
Sbjct: 111 MRRAESPSRSASVSPPSSCVSSEISMNSPETTSMVLVGCPRCLMYVMLSEEDPKCPKCKS 170

Query: 61  TTLLDIFNLTNQGSRGS 78
           T LLD  +  N  +  +
Sbjct: 171 TVLLDFMHDNNDNNNNN 187

[Close]

BLAST of PI0025899.1 vs. NCBI nr
Match: KMT06681.1 (hypothetical protein BVRB_7g158450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-06
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1  MGRSFNNSKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNN 60
          M R+ + S+S S+S   S   S  +   P T  MVL+GC RCLMY+M S+ D KCPKC +
Sbjct: 17 MRRAESPSRSASVSPPSSCVSSEISMNSPETTSMVLVGCPRCLMYVMLSEEDPKCPKCKS 76

Query: 61 TTLLDIFNLTNQGSRGS 78
          T LLD  +  N  +  +
Sbjct: 77 TVLLDFMHDNNDNNNNN 93

[Close]

BLAST of PI0025899.1 vs. NCBI nr
Match: KEH24197.1 (hypothetical protein MTR_7g105730 [Medicago truncatula])

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-06
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 8   SKSESISQDLSLAISNSTTEDPSTAVMVLLGCTRCLMYIMSSKLDLKCPKCNNTTLLDIF 67
           ++S S+S   S   S + +  P    M+L+GC RCLMY+M S+ D KCPKC++T LLD  
Sbjct: 44  TRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 103

Query: 68  NLTNQGSRGS 78
           N  N  ++ S
Sbjct: 104 NAENNNNKKS 113

[Close]

BLAST of PI0025899.1 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-08
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 1   MGRSFNNSKSESISQDLSLAISNSTTED---------PSTAVMVLLGCTRCLMYIMSSKL 60
           M RS + S + S +   S  +S+   +D         P T  MVL+GC RCLMY+M S+ 
Sbjct: 24  MVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSED 83

Query: 61  DLKCPKCNNTTLLDIF--NLTNQGSRGS 78
           D KCPKC +T LLD    N TN  +  +
Sbjct: 84  DPKCPKCKSTVLLDFLHENATNANANAA 111

[Close]

BLAST of PI0025899.1 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 4  SFNNSKSESISQDLSLAISNSTTEDPSTAV--MVLLGCTRCLMYIMSSKLDLKCPKCNNT 63
          S   S + S +   S  +S+ T ++ +  +  MVL+GC RCLMY+M S  D KCPKC +T
Sbjct: 28 SLVRSPNRSNTTSPSSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKST 87

Query: 64 TLLD 66
           LLD
Sbjct: 88 VLLD 91

[Close]

BLAST of PI0025899.1 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 8.5e-04
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 34 MVLLGCTRCLMYIMSS-KLDLKCPKCNNTTLLDIFNLTNQGSRGS 78
          MV++GC  C+MYI++S + D +CP+CN+  LLD   LT   S+ S
Sbjct: 49 MVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDF--LTGNHSKKS 91

The following BLAST results are available for this feature:

BLAST of PI0025899.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	1.0e-06	39.77	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	2.6e-05	43.75	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]

BLAST of PI0025899.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B7FH31	1.9e-06	42.86	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0267071 ...	[more]
A0A072U397	1.9e-06	42.86	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1	[more]
A0A2Z6M630	5.4e-06	41.67	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_340120 PE=4 SV...	[more]
A0A1S2XTG6	7.0e-06	44.78	uncharacterized protein LOC101497048 OS=Cicer arietinum OX=3827 GN=LOC101497048 ...	[more]
A0A2K3MC92	9.2e-06	43.28	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g04449...	[more]

BLAST of PI0025899.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583700.1	8.8e-19	74.24	hypothetical protein SDJN03_19632, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_013450169.2	3.8e-06	42.86	protein GL2-INTERACTING REPRESSOR 1 [Medicago truncatula] >ACJ84060.1 unknown [M...	[more]
XP_010683626.1	3.8e-06	42.86	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Beta vulga...	[more]
KMT06681.1	3.8e-06	42.86	hypothetical protein BVRB_7g158450 [Beta vulgaris subsp. vulgaris]	[more]
KEH24197.1	3.8e-06	42.86	hypothetical protein MTR_7g105730 [Medicago truncatula]	[more]

BLAST of PI0025899.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06270.1	7.4e-08	39.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11600.1	1.8e-06	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G22270.1	8.5e-04	46.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33177:SF51	GB\|AAF02129.1	coord: 14..71
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 14..71

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0025899	PI0025899	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025899.1-five_prime_utr	PI0025899.1-five_prime_utr-chr12:16454580..16454728	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025899.1-exon	PI0025899.1-exon-chr12:16454580..16455218	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025899.1-cds	PI0025899.1-cds-chr12:16454729..16454992	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0025899.1-three_prime_utr	PI0025899.1-three_prime_utr-chr12:16454993..16455218	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0025899.1	PI0025899.1-protein	polypeptide