PI0024367.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0024367.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 16963382 .. 16963714 (-)
Sequence length	246
RNA-Seq Expression	PI0024367.1
Synteny	PI0024367.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCATCTTTTACGGCAAAGTTGATGGCCATAAAGGAGTTATTGACGATTTTAATTATGGTATGTTGTTCTTTCAATTTGATTATTTTTTATTTTTAATGTTAATTAAATTTTTATATCCATTCGTATTGTTCATACAATTTGTAGAGGAAGTCAATTGAGATGCAACAATGCTACGATGGTGGTGAAGGTCCGTCATTTGTCGCATTGATTCCTGACCCACCAGTTGATGATCTAATTGGTGTCATGGTGGATAATTACGAAAATGTTCTTACTCCAGGCACTGCAAATCAATTTGTTGATGATGCGGCTAAAAACATCCATCAGTGA

mRNA sequence

ATGGAGTCATCTTTTACGGCAAAGTTGATGGCCATAAAGGAGTTATTGACGATTTTAATTATGAGGAAGTCAATTGAGATGCAACAATGCTACGATGGTGGTGAAGGTCCGTCATTTGTCGCATTGATTCCTGACCCACCAGTTGATGATCTAATTGGTGTCATGGTGGATAATTACGAAAATGTTCTTACTCCAGGCACTGCAAATCAATTTGTTGATGATGCGGCTAAAAACATCCATCAGTGA

Coding sequence (CDS)

ATGGAGTCATCTTTTACGGCAAAGTTGATGGCCATAAAGGAGTTATTGACGATTTTAATTATGAGGAAGTCAATTGAGATGCAACAATGCTACGATGGTGGTGAAGGTCCGTCATTTGTCGCATTGATTCCTGACCCACCAGTTGATGATCTAATTGGTGTCATGGTGGATAATTACGAAAATGTTCTTACTCCAGGCACTGCAAATCAATTTGTTGATGATGCGGCTAAAAACATCCATCAGTGA

Protein sequence

MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYENVLTPGTANQFVDDAAKNIHQ

Homology

[Close]

BLAST of PI0024367.1 vs. ExPASy TrEMBL
Match: A0A0A0M3N2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699600 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-08
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1  MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYE 60
          MESSF  +L  IKE+L +L+ RK +E Q+ Y GG+GP FVA +  PPV DL+G    +Y 
Sbjct: 1  MESSFMVELTTIKEMLIVLLKRKLVERQKFYGGGKGPPFVAPLVGPPVHDLVG----HYV 60

Query: 61 NVLTPGTANQFVDD 75
          +VL     NQ +DD
Sbjct: 61 DVLDLEIDNQALDD 70

[Close]

BLAST of PI0024367.1 vs. ExPASy TrEMBL
Match: A0A0A0M3R6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701370 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1   MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYE 60
           M+SSFTAKL AI ELL +L+  K+++ QQCY GGEG SF A   +  VDD+       + 
Sbjct: 75  MQSSFTAKLSAINELLMVLVKDKAVDSQQCYGGGEGLSFNASEVENRVDDV-------FM 134

Query: 61  NVLTPGTANQFVDDAAK 78
           +V TP   +Q VDD  +
Sbjct: 135 DVPTPNIDDQHVDDKTR 144

[Close]

BLAST of PI0024367.1 vs. ExPASy TrEMBL
Match: A0A0A0KH42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383540 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 1   MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYE 60
           ME S  A+LMAI E+LT+L+        + YD G+  SFVA  PDPPVD  IG +V  Y 
Sbjct: 52  MELSLAAELMAINEMLTLLL--------KFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYI 111

Query: 61  NVLTPGTANQFVDDAA 77
           +VL P   +Q +DD A
Sbjct: 112 DVLAPKADDQALDDVA 119

[Close]

BLAST of PI0024367.1 vs. ExPASy TrEMBL
Match: A0A1S3BN49 (uncharacterized protein LOC103491868 OS=Cucumis melo OX=3656 GN=LOC103491868 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1  MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYE 60
          M+SS TA+L  IKELL +L+  K+++ QQCY GGEG SF A      VDD   V VD   
Sbjct: 26 MQSSITAELSTIKELLMLLVKGKAVDSQQCYGGGEGTSFNASKVGNLVDD---VFVDFSA 85

Query: 61 NVLTPGTANQ 71
           ++   T N+
Sbjct: 86 PIIDNQTINE 92

[Close]

BLAST of PI0024367.1 vs. ExPASy TrEMBL
Match: A0A5D3C1Z8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00350 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 1   MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLI----GVMV 59
           M+SS TA+L  IKELL +L+  K+++ QQCY GGEG SF A      VDD+      +++
Sbjct: 205 MQSSITAELSTIKELLVLLVKGKAVDSQQCYGGGEGTSFNASKVGNLVDDVFVDFSALII 264

[Close]

BLAST of PI0024367.1 vs. NCBI nr
Match: KGN66831.1 (hypothetical protein Csa_007207 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1  MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYE 60
          MESSF  +L  IKE+L +L+ RK +E Q+ Y GG+GP FVA +  PPV DL+G    +Y 
Sbjct: 1  MESSFMVELTTIKEMLIVLLKRKLVERQKFYGGGKGPPFVAPLVGPPVHDLVG----HYV 60

Query: 61 NVLTPGTANQFVDD 75
          +VL     NQ +DD
Sbjct: 61 DVLDLEIDNQALDD 70

[Close]

BLAST of PI0024367.1 vs. NCBI nr
Match: KAE8653658.1 (hypothetical protein Csa_023635, partial [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1   MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYE 60
           M+SSFTAKL AI ELL +L+  K+++ QQCY GGEG SF A   +  VDD+       + 
Sbjct: 74  MQSSFTAKLSAINELLMVLVKDKAVDSQQCYGGGEGLSFNASEVENRVDDV-------FM 133

Query: 61  NVLTPGTANQFVDDAAK 78
           +V TP   +Q VDD  +
Sbjct: 134 DVPTPNIDDQHVDDKTR 143

[Close]

BLAST of PI0024367.1 vs. NCBI nr
Match: KGN47717.1 (hypothetical protein Csa_018263 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 1   MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYE 60
           ME S  A+LMAI E+LT+L+        + YD G+  SFVA  PDPPVD  IG +V  Y 
Sbjct: 52  MELSLAAELMAINEMLTLLL--------KFYDRGQHTSFVAPPPDPPVDYPIGDLVGYYI 111

Query: 61  NVLTPGTANQFVDDAA 77
           +VL P   +Q +DD A
Sbjct: 112 DVLAPKADDQALDDVA 119

[Close]

BLAST of PI0024367.1 vs. NCBI nr
Match: XP_008450207.1 (PREDICTED: uncharacterized protein LOC103491868 [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-04
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1  MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLIGVMVDNYE 60
          M+SS TA+L  IKELL +L+  K+++ QQCY GGEG SF A      VDD   V VD   
Sbjct: 26 MQSSITAELSTIKELLMLLVKGKAVDSQQCYGGGEGTSFNASKVGNLVDD---VFVDFSA 85

Query: 61 NVLTPGTANQ 71
           ++   T N+
Sbjct: 86 PIIDNQTINE 92

[Close]

BLAST of PI0024367.1 vs. NCBI nr
Match: TYK05228.1 (uncharacterized protein E5676_scaffold108G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-04
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 0


Query: 1   MESSFTAKLMAIKELLTILIMRKSIEMQQCYDGGEGPSFVALIPDPPVDDLI----GVMV 59
           M+SS TA+L  IKELL +L+  K+++ QQCY GGEG SF A      VDD+      +++
Sbjct: 205 MQSSITAELSTIKELLVLLVKGKAVDSQQCYGGGEGTSFNASKVGNLVDDVFVDFSALII 264

The following BLAST results are available for this feature:

BLAST of PI0024367.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024367.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3N2	3.1e-08	48.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699600 PE=4 SV=1	[more]
A0A0A0M3R6	2.7e-07	46.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701370 PE=4 SV=1	[more]
A0A0A0KH42	5.0e-06	47.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383540 PE=4 SV=1	[more]
A0A1S3BN49	2.1e-04	45.71	uncharacterized protein LOC103491868 OS=Cucumis melo OX=3656 GN=LOC103491868 PE=...	[more]
A0A5D3C1Z8	2.8e-04	46.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0024367.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66831.1	6.5e-08	48.65	hypothetical protein Csa_007207 [Cucumis sativus]	[more]
KAE8653658.1	5.5e-07	46.75	hypothetical protein Csa_023635, partial [Cucumis sativus]	[more]
KGN47717.1	1.0e-05	47.37	hypothetical protein Csa_018263 [Cucumis sativus]	[more]
XP_008450207.1	4.4e-04	45.71	PREDICTED: uncharacterized protein LOC103491868 [Cucumis melo]	[more]
TYK05228.1	5.7e-04	46.77	uncharacterized protein E5676_scaffold108G00350 [Cucumis melo var. makuwa]	[more]

BLAST of PI0024367.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0024367	PI0024367	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024367.1-exon	PI0024367.1-exon-chr06:16963382..16963564	exon
PI0024367.1-exon	PI0024367.1-exon-chr06:16963652..16963714	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024367.1-cds	PI0024367.1-cds-chr06:16963382..16963564	CDS
PI0024367.1-cds	PI0024367.1-cds-chr06:16963652..16963714	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0024367.1	PI0024367.1-protein	polypeptide