PI0023780.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0023780.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr02: 12217068 .. 12217340 (+)
Sequence length	273
RNA-Seq Expression	PI0023780.1
Synteny	PI0023780.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGTCGTAGAGTATGAAAAGAAATTCACGAAATTGGCTAAGTATGCGTTAGCCTTTGTAGTTGATGAAGTGGATAAATGCAAACGATTTAAGGGAGGTTTGCGAATAGAAATCAAAGCTCCAGTGACGGCGAGCATGGACTTGTCCGATTTCTCCAAATTGGTAGAAGCTGCCATGAGAGTAGAGAATTACCTGGCAGAACAAAAGGAAAACAAGGATGCGAGGGAAGGATTCGGCGTCCACAATGCTAGCGCGACATGGCGAGAATAG

mRNA sequence

ATGACCGTCGTAGAGTATGAAAAGAAATTCACGAAATTGGCTAAGTATGCGTTAGCCTTTGTAGTTGATGAAGTGGATAAATGCAAACGATTTAAGGGAGGTTTGCGAATAGAAATCAAAGCTCCAGTGACGGCGAGCATGGACTTGTCCGATTTCTCCAAATTGGTAGAAGCTGCCATGAGAGTAGAGAATTACCTGGCAGAACAAAAGGAAAACAAGGATGCGAGGGAAGGATTCGGCGTCCACAATGCTAGCGCGACATGGCGAGAATAG

Coding sequence (CDS)

ATGACCGTCGTAGAGTATGAAAAGAAATTCACGAAATTGGCTAAGTATGCGTTAGCCTTTGTAGTTGATGAAGTGGATAAATGCAAACGATTTAAGGGAGGTTTGCGAATAGAAATCAAAGCTCCAGTGACGGCGAGCATGGACTTGTCCGATTTCTCCAAATTGGTAGAAGCTGCCATGAGAGTAGAGAATTACCTGGCAGAACAAAAGGAAAACAAGGATGCGAGGGAAGGATTCGGCGTCCACAATGCTAGCGCGACATGGCGAGAATAG

Protein sequence

MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAMRVENYLAEQKENKDAREGFGVHNASATWRE

Homology

[Close]

BLAST of PI0023780.1 vs. ExPASy TrEMBL
Match: A0A5D3D2P1 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00770 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1   MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
           M ++EYEK+F +LAKYAL FV DEVDKCKRF+ G+R EI+APVTA+MD S+ SK+V+ AM
Sbjct: 86  MAIIEYEKRFIELAKYALVFVTDEVDKCKRFEEGMRTEIRAPVTANMDWSNLSKMVKVAM 145

Query: 61  RVENYLAEQKENK 74
           RVE  + + K+NK
Sbjct: 146 RVEKRMVDDKKNK 158

[Close]

BLAST of PI0023780.1 vs. ExPASy TrEMBL
Match: A0A5A7V3F2 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00210 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
          MTV EYEK FT+LAKYALAFVV+E DKCKRF+ GLR EI+A +T SMD SDFSKLVE  M
Sbjct: 1  MTVTEYEKWFTELAKYALAFVVNEADKCKRFEEGLRTEIRALITISMDWSDFSKLVEVVM 60

Query: 61 RVENYLAEQKEN 73
           VE  + E K+N
Sbjct: 61 SVEKCMVEDKKN 72

[Close]

BLAST of PI0023780.1 vs. ExPASy TrEMBL
Match: A0A5A7V373 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003760 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.2e-17
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
          +TV  YEK+FT+LAKYALAFVVDE DKCKRF+ GL+ EI A VT SMDL  FSKLVEAAM
Sbjct: 8  LTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSKLVEAAM 67

Query: 61 RVENYLAEQKENKDARE 78
          RVE  +   K+NK +++
Sbjct: 68 RVERCMEVDKKNKISKK 84

[Close]

BLAST of PI0023780.1 vs. ExPASy TrEMBL
Match: A0A5D3BZ05 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002070 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.2e-17
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
           +TV  YEK+FT+LAKYALAFVVDE DKCKRF+ GL+ EI A VT SMDL  FSKLVEAAM
Sbjct: 95  LTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSKLVEAAM 154

Query: 61  RVENYLAEQKENKDARE 78
           RVE  +   K+NK +++
Sbjct: 155 RVERCMEVDKKNKISKK 171

[Close]

BLAST of PI0023780.1 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1   MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
           MTV EYEKK+T+L+KYA   +VDE ++CKRF+ GLR EI+ PVTA  D +DFSKLVE A+
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVENYLAEQKENKDAREGFGVHNAS 86
           RVE  L E+K  ++A +     ++S
Sbjct: 234 RVEKSLNERKREREASKNLRTFSSS 258

[Close]

BLAST of PI0023780.1 vs. NCBI nr
Match: KAA0031989.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK16809.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1   MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
           M ++EYEK+F +LAKYAL FV DEVDKCKRF+ G+R EI+APVTA+MD S+ SK+V+ AM
Sbjct: 86  MAIIEYEKRFIELAKYALVFVTDEVDKCKRFEEGMRTEIRAPVTANMDWSNLSKMVKVAM 145

Query: 61  RVENYLAEQKENK 74
           RVE  + + K+NK
Sbjct: 146 RVEKRMVDDKKNK 158

[Close]

BLAST of PI0023780.1 vs. NCBI nr
Match: KAA0062762.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK08836.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.0e-17
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
          MTV EYEK FT+LAKYALAFVV+E DKCKRF+ GLR EI+A +T SMD SDFSKLVE  M
Sbjct: 1  MTVTEYEKWFTELAKYALAFVVNEADKCKRFEEGLRTEIRALITISMDWSDFSKLVEVVM 60

Query: 61 RVENYLAEQKEN 73
           VE  + E K+N
Sbjct: 61 SVEKCMVEDKKN 72

[Close]

BLAST of PI0023780.1 vs. NCBI nr
Match: KAA0062038.1 (hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
          +TV  YEK+FT+LAKYALAFVVDE DKCKRF+ GL+ EI A VT SMDL  FSKLVEAAM
Sbjct: 8  LTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSKLVEAAM 67

Query: 61 RVENYLAEQKENKDARE 78
          RVE  +   K+NK +++
Sbjct: 68 RVERCMEVDKKNKISKK 84

[Close]

BLAST of PI0023780.1 vs. NCBI nr
Match: TYK04983.1 (uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
           +TV  YEK+FT+LAKYALAFVVDE DKCKRF+ GL+ EI A VT SMDL  FSKLVEAAM
Sbjct: 95  LTVAGYEKQFTELAKYALAFVVDETDKCKRFEEGLQTEIIALVTTSMDLFHFSKLVEAAM 154

Query: 61  RVENYLAEQKENKDARE 78
           RVE  +   K+NK +++
Sbjct: 155 RVERCMEVDKKNKISKK 171

[Close]

BLAST of PI0023780.1 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-15
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1   MTVVEYEKKFTKLAKYALAFVVDEVDKCKRFKGGLRIEIKAPVTASMDLSDFSKLVEAAM 60
           MTV EYEKK+T+L+KYA   +VDE ++CKRF+ GLR EI+ PVTA  D +DFSKLVE A+
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVENYLAEQKENKDAREGFGVHNAS 86
           RVE  L E+K  ++A +     ++S
Sbjct: 200 RVEKSLNERKREREASKNLRTFSSS 224

The following BLAST results are available for this feature:

BLAST of PI0023780.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023780.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2P1	1.4e-17	63.01	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7V3F2	2.4e-17	69.44	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V373	9.2e-17	66.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BZ05	9.2e-17	66.23	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BB91	1.3e-15	54.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of PI0023780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031989.1	2.9e-17	63.01	putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK16809.1 putative...	[more]
KAA0062762.1	5.0e-17	69.44	zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK08836.1 zf-CCHC...	[more]
KAA0062038.1	1.9e-16	66.23	hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa]	[more]
TYK04983.1	1.9e-16	66.23	uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]	[more]
KAA0036813.1	2.7e-15	54.12	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0023780.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0023780	PI0023780	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023780.1-exon	PI0023780.1-exon-chr02:12217068..12217340	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023780.1-cds	PI0023780.1-cds-chr02:12217068..12217340	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0023780.1	PI0023780.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity