PI0023770.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0023770.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr03: 20626988 .. 20627449 (-)
Sequence length	462
RNA-Seq Expression	PI0023770.1
Synteny	PI0023770.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGTTCTACTGTTTTGAGGGTTTCTACTCCTTTAAACCCTCCTTCATCTACTTCTCCGACCATTGAACCCTCTTCTCTGCATGTGCTTCCAAACTCTTGTATTCTTCAGGTTGATGAAGCTCCTAGCCCTTCTCAATCGAAGCTTCAATTGAGTTATAGATTGTCTCAAGGCAGTCATGTTCCTGATATTGTGCACAACATCAGACCTCAATCAGCTGCTGATCTTCCTCATCCTGATGATCTCCGTAATCCAGATGGTGGGTTATTGATTCCTCTAGCTATTGGAAATCAAATTTTACATGTTCTGACTTTGGAGTCTCGAAGTTTAAGTACTATTCTCCAAGAGCTCCATGTGCGTCGTCGTCTCATAGACTTCATTGTGACGACTCTCCAGTTGATTCTACCAGAAAATGAGGGAGCCTCAACTTCCAATGGTGTTGAACCTTCAATCTCTTAG

mRNA sequence

ATGTGTGGTTCTACTGTTTTGAGGGTTTCTACTCCTTTAAACCCTCCTTCATCTACTTCTCCGACCATTGAACCCTCTTCTCTGCATGTGCTTCCAAACTCTTGTATTCTTCAGGTTGATGAAGCTCCTAGCCCTTCTCAATCGAAGCTTCAATTGAGTTATAGATTGTCTCAAGGCAGTCATGTTCCTGATATTGTGCACAACATCAGACCTCAATCAGCTGCTGATCTTCCTCATCCTGATGATCTCCGTAATCCAGATGGTGGGTTATTGATTCCTCTAGCTATTGGAAATCAAATTTTACATGTTCTGACTTTGGAGTCTCGAAGTTTAAGTACTATTCTCCAAGAGCTCCATGTGCGTCGTCGTCTCATAGACTTCATTGTGACGACTCTCCAGTTGATTCTACCAGAAAATGAGGGAGCCTCAACTTCCAATGGTGTTGAACCTTCAATCTCTTAG

Coding sequence (CDS)

ATGTGTGGTTCTACTGTTTTGAGGGTTTCTACTCCTTTAAACCCTCCTTCATCTACTTCTCCGACCATTGAACCCTCTTCTCTGCATGTGCTTCCAAACTCTTGTATTCTTCAGGTTGATGAAGCTCCTAGCCCTTCTCAATCGAAGCTTCAATTGAGTTATAGATTGTCTCAAGGCAGTCATGTTCCTGATATTGTGCACAACATCAGACCTCAATCAGCTGCTGATCTTCCTCATCCTGATGATCTCCGTAATCCAGATGGTGGGTTATTGATTCCTCTAGCTATTGGAAATCAAATTTTACATGTTCTGACTTTGGAGTCTCGAAGTTTAAGTACTATTCTCCAAGAGCTCCATGTGCGTCGTCGTCTCATAGACTTCATTGTGACGACTCTCCAGTTGATTCTACCAGAAAATGAGGGAGCCTCAACTTCCAATGGTGTTGAACCTTCAATCTCTTAG

Protein sequence

MCGSTVLRVSTPLNPPSSTSPTIEPSSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPENEGASTSNGVEPSIS

Homology

[Close]

BLAST of PI0023770.1 vs. ExPASy TrEMBL
Match: A0A5A7TBV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00290 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.8e-18
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 41  EAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQI 100
           EA S S   L LSY L QGSHVP+I H +RP    D P  ++L   DGGLLIPL++ N I
Sbjct: 63  EASSSSPQTLYLSYNLFQGSHVPNITHQVRPPPVDDFPLLNELCTSDGGLLIPLSLWNII 122

Query: 101 LHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPENEGASTSNGVEPSIS 154
            HVLT ES SLS I+QEL V R+ I+++V T  LILP     STS    PS S
Sbjct: 123 FHVLTTESCSLSGIIQELIVHRQAINYLVHTFSLILPGFGNTSTST-ANPSTS 174

[Close]

BLAST of PI0023770.1 vs. ExPASy TrEMBL
Match: A0A5A7V746 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00500 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.3e-10
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 26  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRN 85
           SSL V  N  IL +++ P P+   L LSY+L QGSHVPDI H++RP     +   DD+  
Sbjct: 37  SSLLVHLNVDILTLNDTPGPNPKTLSLSYKLFQGSHVPDIEHDMRPSKNPRMFDIDDVDE 96

Query: 86  PDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPEN 140
              G  +   + ++I++ LT+ESR+LST +     RR  +D ++  L+ ++P +
Sbjct: 97  NAEGFFVHHGLASRIINTLTIESRALSTSINLPSDRRLEVDSLIRHLKTLIPSS 150

[Close]

BLAST of PI0023770.1 vs. ExPASy TrEMBL
Match: A0A5A7UCJ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G001780 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.3e-10
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 26  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRN 85
           SSL V  N  IL  ++AP P    L LSYRL QGSHVP+I H++RP     +   DD+  
Sbjct: 206 SSLLVHLNVDILTPNDAPGPDLKTLSLSYRLFQGSHVPNIEHDMRPSRNPHMFDTDDVDE 265

Query: 86  PDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPEN 140
              G  +   + ++I+++ T ES++LST +  L  RR  +D +V  L+ ++P +
Sbjct: 266 NTEGFFVHHGLASRIINMFTAESQALSTSINMLSNRRLEVDSLVRHLKTLIPSS 319

[Close]

BLAST of PI0023770.1 vs. ExPASy TrEMBL
Match: A0A5D3D6T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G001260 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 26  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRN 85
           SSL V  N  IL  ++AP P    L LSYRL QGSHVP+I H++RP     +   DD+  
Sbjct: 206 SSLLVHLNVDILTPNDAPGPDLKTLSLSYRLFQGSHVPNIEHDMRPSRNPHMFDTDDVDE 265

Query: 86  PDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPEN 140
              G  +   + ++I+++L  ES++LST +  L  RR  +D +V  L+ ++P +
Sbjct: 266 NTEGFFVHHGLASRIINMLMAESQALSTSINMLSNRRLEVDSLVRHLKTLIPSS 319

[Close]

BLAST of PI0023770.1 vs. ExPASy TrEMBL
Match: A0A5D3CEK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00590 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 26  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRN 85
           SSL V  N+ IL   +A  P Q  L LSY+L +GSHVPD+ H++RP   + +   +D+ +
Sbjct: 255 SSLLVHLNANILTARDALGPDQKTLSLSYKLFKGSHVPDLEHDMRPSRNSRVFDINDIDD 314

Query: 86  PDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQ 134
              G  +P  + ++I++ LT+ESR+LST +  L  RR  +D +V  L+
Sbjct: 315 SAEGFFVPHDLDSKIINTLTVESRALSTFINLLFDRRLEVDSLVRYLK 362

[Close]

BLAST of PI0023770.1 vs. NCBI nr
Match: KAA0040543.1 (uncharacterized protein E6C27_scaffold262G00970 [Cucumis melo var. makuwa] >TYK05585.1 uncharacterized protein E5676_scaffold98G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-17
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 41  EAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRNPDGGLLIPLAIGNQI 100
           EA S S   L LSY L QGSHVP+I H +RP    D P  ++L   DGGLLIPL++ N I
Sbjct: 63  EASSSSPQTLYLSYNLFQGSHVPNITHQVRPPPVDDFPLLNELCTSDGGLLIPLSLWNII 122

Query: 101 LHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPENEGASTSNGVEPSIS 154
            HVLT ES SLS I+QEL V R+ I+++V T  LILP     STS    PS S
Sbjct: 123 FHVLTTESCSLSGIIQELIVHRQAINYLVHTFSLILPGFGNTSTST-ANPSTS 174

[Close]

BLAST of PI0023770.1 vs. NCBI nr
Match: KAA0062797.1 (uncharacterized protein E6C27_scaffold357G00140 [Cucumis melo var. makuwa] >TYJ96756.1 uncharacterized protein E5676_scaffold986G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 26  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRN 85
           SSL V  N  IL +++ P P+   L LSY+L QGSHVPDI H++RP     +   DD+  
Sbjct: 37  SSLLVHLNVDILTLNDTPGPNPKTLSLSYKLFQGSHVPDIEHDMRPSKNPRMFDIDDVDE 96

Query: 86  PDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPEN 140
              G  +   + ++I++ LT+ESR+LST +     RR  +D ++  L+ ++P +
Sbjct: 97  NAEGFFVHHGLASRIINTLTIESRALSTSINLPSDRRLEVDSLIRHLKTLIPSS 150

[Close]

BLAST of PI0023770.1 vs. NCBI nr
Match: KAA0053603.1 (uncharacterized protein E6C27_scaffold190G001780 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 26  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRN 85
           SSL V  N  IL  ++AP P    L LSYRL QGSHVP+I H++RP     +   DD+  
Sbjct: 206 SSLLVHLNVDILTPNDAPGPDLKTLSLSYRLFQGSHVPNIEHDMRPSRNPHMFDTDDVDE 265

Query: 86  PDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPEN 140
              G  +   + ++I+++ T ES++LST +  L  RR  +D +V  L+ ++P +
Sbjct: 266 NTEGFFVHHGLASRIINMFTAESQALSTSINMLSNRRLEVDSLVRHLKTLIPSS 319

[Close]

BLAST of PI0023770.1 vs. NCBI nr
Match: TYK19190.1 (uncharacterized protein E5676_scaffold522G001260 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-09
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 26  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRN 85
           SSL V  N  IL  ++AP P    L LSYRL QGSHVP+I H++RP     +   DD+  
Sbjct: 206 SSLLVHLNVDILTPNDAPGPDLKTLSLSYRLFQGSHVPNIEHDMRPSRNPHMFDTDDVDE 265

Query: 86  PDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQLILPEN 140
              G  +   + ++I+++L  ES++LST +  L  RR  +D +V  L+ ++P +
Sbjct: 266 NTEGFFVHHGLASRIINMLMAESQALSTSINMLSNRRLEVDSLVRHLKTLIPSS 319

[Close]

BLAST of PI0023770.1 vs. NCBI nr
Match: KAA0025798.1 (uncharacterized protein E6C27_scaffold34G00480 [Cucumis melo var. makuwa] >TYK09658.1 uncharacterized protein E5676_scaffold447G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-09
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 26  SSLHVLPNSCILQVDEAPSPSQSKLQLSYRLSQGSHVPDIVHNIRPQSAADLPHPDDLRN 85
           SSL V  N+ IL   +A  P Q  L LSY+L +GSHVPD+ H++RP   + +   +D+ +
Sbjct: 255 SSLLVHLNANILTARDALGPDQKTLSLSYKLFKGSHVPDLEHDMRPSRNSRVFDINDIDD 314

Query: 86  PDGGLLIPLAIGNQILHVLTLESRSLSTILQELHVRRRLIDFIVTTLQ 134
              G  +P  + ++I++ LT+ESR+LST +  L  RR  +D +V  L+
Sbjct: 315 SAEGFFVPHDLDSKIINTLTVESRALSTFINLLFDRRLEVDSLVRYLK 362

The following BLAST results are available for this feature:

BLAST of PI0023770.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023770.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBV1	4.8e-18	53.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V746	6.3e-10	36.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UCJ0	8.3e-10	37.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D6T2	1.4e-09	37.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CEK6	3.1e-09	38.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0023770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040543.1	1.0e-17	53.10	uncharacterized protein E6C27_scaffold262G00970 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0062797.1	1.3e-09	36.84	uncharacterized protein E6C27_scaffold357G00140 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0053603.1	1.7e-09	37.72	uncharacterized protein E6C27_scaffold190G001780 [Cucumis melo var. makuwa]	[more]
TYK19190.1	2.9e-09	37.72	uncharacterized protein E5676_scaffold522G001260 [Cucumis melo var. makuwa]	[more]
KAA0025798.1	6.5e-09	38.89	uncharacterized protein E6C27_scaffold34G00480 [Cucumis melo var. makuwa] >TYK09...	[more]

BLAST of PI0023770.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0023770	PI0023770	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023770.1-exon	PI0023770.1-exon-chr03:20626988..20627449	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023770.1-cds	PI0023770.1-cds-chr03:20626988..20627449	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0023770.1	PI0023770.1-protein	polypeptide