PI0023430.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0023430.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	THO complex subunit 4D
Location	chr06: 14844156 .. 14846711 (-)
Sequence length	1058
RNA-Seq Expression	PI0023430.1
Synteny	PI0023430.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATAGTGTAGTTATTTTTGAGTTTTGACCTATAGGATTATAGGATTTTATAATATGATCTCTACCAATCATCATGGGTTGACCTAGTGGTTAAAGTGGAGACATAGTCTCTATAAATGGCTAAGAGGTCATGGGTTAAATCCCTACCCAGGCATTAATATCCTATGAGTTTATTTGACACCCAAATGTTGTAGTGTGTTTTGTAAGATTAGTCGAGGTGCTCGTATGTTGACCTGGACACTCATGGATATAAAAAAAATGATAGACACCAATTTTAAAACTCGAAGAGTTTGATGGAGCTGGTTATGCCATTTTAATTTAACCTTTAATTAACACTTTAAAGGTATGTAATAAACACATTTTTTCTTCTAAATTGTATTTTTAGTTCCATCGTATGTAAAATCACTACAAAGAAGTTTCATTGTGAGTAATTTCTAATACCCACTTCCAATGTAATTTAACTATACTAGACGCACAAATTCTTGCTACTGCCCTAAACTAGCATTTGCTGATTGCAGTTAAGTTACTTCTTAAAATACATTTTCTCAAGAGTTTTTAGTTCTCAAAATGCATTGGACAGCTTTTCTTGCTTTTAACTTGGAGTGAACTTTCTCTACCTCTTTGTAGCTATTAGATGTAACTATAGCATATCAATTCTCATGTCACATTGGAGGAACTTCTTGTTATTACAGTCACATATAGGACTTCTCTTGTAACCTATTTCATCAATGAATGAACAGAACTTGGGGACGTGGAGAAATCTAGAAAGGAGGTTTTGGAGATGGTGAGGTTTAATGTTTACGTTAGGGCGTCGGTCGCTAGATCATTTGTAATTATGATATCGAACTATTTCTTTTGGACTGGAGTCGCTTCTATAGTTCATGTTGAGCTCTTATTTTTTGGGCCGTTTTTTGTTTGGCCTTATACTCTTTCATTTTTTCGTGCTGTCCTTTGAAATTTTGTTTAGATTGGTCTATGATAAATTTTGTAGTAGTTTGATAAATTTTTCGTGCTGTCCTTTGAAAATTGTACTTCTAACATGTTTGATGAAAAGAAACATAATCTGCCTTGAGTAGTAATATTAAGATTTGTTGGGTATATGCAGGCCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTCAACCCTTTTCCTGGGTAAGTTCTAACTGGACATGCTTTTGGCATGAGATTTTTATATTCAATAGCAGAGTAGCTGGGTTTTATTATTATTATTATTGTTGTTATTTTGTTCTGGGATTGTTTTACTGCCTGATAGTTGGATTGGTTTTGAAGTCATTTATTCTTGGTTGCTCATATCTTTGATTTTCTTAGGGGTGTTAGAATTGAGAGTTATATTTTTTCTACTTGTTTGGAAGTGTGGAAGACAAGCTAATGAACTATTACCACCTTTTTGTTTTCCTTTTTTAATTTCTTTTTTATGTTAGAAAATTATTTGGTATGATAACATTTAATAAATTTTTTAGAATAAAAAAGAAAAAAACTGATAACAGATGTTCGTGATAGTAGTGCAATACTTTTGTGTGTTTCCTAAATTTTATAAATCAACTCTTTAAATATGCCCCAATTATTTTTGAAAATTAATATGAAAATTAAAAAACAAAACTTTTCTTGTAGTTTTTATAAGGTCAAATTACAAGTTCAGTCTTAACAGACTTTTTGGTTTTGTCTCTAAACTTTAAAAAGTGTTTAATTAAGTCTTTTATTATTATTTTTCTTTATTAATGTGAAACAAGATGAAATAAAATATGTTAATGAAAAGTGAACGTAACCTAAAGGCCTATGGGATGAGAGGACCCTAAGCCTTAATTGTCCTCTAATGTGTATTTTAAGAAGAATTGTGCAAAGTGCTCCACGTGGAGACCATAAGTTGTACGTTTTCATCAAGTGTCAGTAAGTCCTTAACTTTCTACTATTGTGTATAACAAGTTGTTGACTTGTTCAATATTTTTTTTAAAATTCATGGATCTACTAGAATACAAAATCAAAAGTTTTGGGTTCTATTAAATTGAAATTCAACTTTATATCTAATAGAACATAAACTTTCTTTAAAAAATGATTATTCTAGGCATTTATTTGACATAAAATTGTTGAAAGTTCAAAGAAAGCAATCAGTGTAGGATATTCGATCTCTTGGAAACTAGATGAGTTTGAGGCCATTCTTGATAGTAGTCACTGAAAGTATCCTTTGAAAAGTTTTTAAAAGTGTACGTCATGAGTTGGAAATGGAGTAAGATGAATGAACTTTGCTTGAATTGGTAAAACTTGTTCTTATTGATGTCTGGGTTTTTGAAACTTTTGGGTTTTGTATTAGTCCAAGTCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGCCGTGGGCAGGGGCAGGGAAGAAAAAAACCTGTGGAGAAGTCCTCAGACGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

mRNA sequence

CAATAGTGTAGTTATTTTTGAGTTTTGACCTATAGGATTATAGGATTTTATAATATGATCTCTACCAATCATCATGGGTTGACCTAGTGGTTAAAGTGGAGACATAGTCTCTATAAATGGCTAAGAGGTCATGGGTTAAATCCCTACCCAGGCATTAATATCCTATGAGTTTATTTGACACCCAAATGTTGTAGTGTGTTTTGTAAGATTAGTCGAGGTGCTCGTATGTTGACCTGGACACTCATGGATATAAAAAAAATGATAGACACCAATTTTAAAACTCGAAGAGTTTGATGGAGCTGGTTATGCCATTTTAATTTAACCTTTAATTAACACTTTAAAGGTATGTAATAAACACATTTTTTCTTCTAAATTGTATTTTTAGTTCCATCGTATGTAAAATCACTACAAAGAAGTTTCATTGTGAGTAATTTCTAATACCCACTTCCAATGTAATTTAACTATACTAGACGCACAAATTCTTGCTACTGCCCTAAACTAGCATTTGCTGATTGCAGTTAAGTTACTTCTTAAAATACATTTTCTCAAGAGTTTTTAGTTCTCAAAATGCATTGGACAGCTTTTCTTGCTTTTAACTTGGAGTGAACTTTCTCTACCTCTTTGTAGCTATTAGATGTAACTATAGCATATCAATTCTCATGTCACATTGGAGGAACTTCTTGTTATTACAGTCACATATAGGACTTCTCTTGTAACCTATTTCATCAATGAATGAACAGAACTTGGGGACGTGGAGAAATCTAGAAAGGAGGTTTTGGAGATGGCCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTCAACCCTTTTCCTGGTCCAAGTCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGCCGTGGGCAGGGGCAGGGAAGAAAAAAACCTGTGGAGAAGTCCTCAGACGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Coding sequence (CDS)

ATGAATGAACAGAACTTGGGGACGTGGAGAAATCTAGAAAGGAGGTTTTGGAGATGGCCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTCAACCCTTTTCCTGGTCCAAGTCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGCCGTGGGCAGGGGCAGGGAAGAAAAAAACCTGTGGAGAAGTCCTCAGACGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Protein sequence

MNEQNLGTWRNLERRFWRWPESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT

Homology

[Close]

BLAST of PI0023430.1 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-05
Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 34  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQ 93
           F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G GRG    G+
Sbjct: 209 FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGR 268

Query: 94  GRKKPVEKSSDELDKELENYHAEAM 108
           G KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 269 GGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of PI0023430.1 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 36  GPSHRGGLRNARGRGRGAW-----------SRGVGLGGGSGGGRGRGRGR-GRGRGQGQG 95
           G   RG +R  RG GRG              +G G+ GG GG R RGRG  GRGRG G+G
Sbjct: 202 GGGGRGRVRGGRG-GRGPAPTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRG 261

Query: 96  R-KKPVEKSSDELDKELENYHAEAMQT 110
             KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 262 NGKKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of PI0023430.1 vs. ExPASy TrEMBL
Match: A0A0A0LCJ7 (FoP_duplication domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302110 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 84/89 (94.38%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 21  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQ 80
           ESGRNATSNVVN FPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGR    
Sbjct: 26  ESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGR---- 85

Query: 81  GQGRKKPVEKSSDELDKELENYHAEAMQT 110
           GQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 86  GQGRKKPVEKSSDELDKELENYHAEAMQT 110

[Close]

BLAST of PI0023430.1 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 20  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRG 79
           PESGRNAT NVVNPFPGPSHRGGLRNARGRGRGAW+RGVGL GGSGGGRGRGRGRGR   
Sbjct: 201 PESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGVGL-GGSGGGRGRGRGRGR--- 260

Query: 80  QGQGRKKPVEKSSDELDKELENYHAEAMQT 110
            GQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 261 -GQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of PI0023430.1 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 76/104 (73.08%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 21  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSG---------GGRGRG 80
           ESGR  +SN VNPFPGPSHRGGLR+ RGRGRG WSRG+G GGG G         GGRGRG
Sbjct: 202 ESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGGWSRGLGGGGGRGLGGGGGRGLGGRGRG 261

Query: 81  RGR------GRGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 110
           RGR      G GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 262 RGRGSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 305

[Close]

BLAST of PI0023430.1 vs. ExPASy TrEMBL
Match: A0A6J1FAB9 (THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 74/94 (78.72%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 21  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRG 80
           ESGR  +S+ VNPFPGPSHRGGLR+   RGRGRG WSRG+G GGG    GGGRGRGRG G
Sbjct: 202 ESGRTGSSHAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSG 261

Query: 81  RGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 110
            GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 262 SGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of PI0023430.1 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19
Identity = 65/89 (73.03%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 21  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQ 80
           ESGR  +S VVN FPGPS+RG LR  RGRGRG WSRG G  GG       GRGRGRGRG+
Sbjct: 201 ESGRTDSSTVVNHFPGPSNRGALR-GRGRGRGGWSRGQGQVGG-------GRGRGRGRGR 260

Query: 81  GQGRKKPVEKSSDELDKELENYHAEAMQT 110
           G GRKK VEKSSDELDK+LENYHAEAMQT
Sbjct: 261 GLGRKKTVEKSSDELDKDLENYHAEAMQT 281

[Close]

BLAST of PI0023430.1 vs. NCBI nr
Match: XP_004145851.1 (THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_011773 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 84/89 (94.38%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 21  ESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRGQ 80
           ESGRNATSNVVN FPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGR    
Sbjct: 202 ESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGR---- 261

Query: 81  GQGRKKPVEKSSDELDKELENYHAEAMQT 110
           GQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 262 GQGRKKPVEKSSDELDKELENYHAEAMQT 286

[Close]

BLAST of PI0023430.1 vs. NCBI nr
Match: XP_008457020.1 (PREDICTED: THO complex subunit 4D [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-31
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 20  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRG 79
           PESGRNAT NVVNPFPGPSHRGGLRNARGRGRGAW+RGVGL GGSGGGRGRGRGRGR   
Sbjct: 201 PESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGVGL-GGSGGGRGRGRGRGR--- 260

Query: 80  QGQGRKKPVEKSSDELDKELENYHAEAMQT 110
            GQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 261 -GQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of PI0023430.1 vs. NCBI nr
Match: XP_038896761.1 (THO complex subunit 4D-like [Benincasa hispida])

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-29
Identity = 76/90 (84.44%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 20  PESGRNATSNVVNPFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGRG 79
           PESGR A+SNVVNPFPGPSHRGGLRN RGRGRG W+RG G+GGG G     GRGRGRGRG
Sbjct: 201 PESGRTASSNVVNPFPGPSHRGGLRNGRGRGRGGWNRGQGVGGGGG-----GRGRGRGRG 260

Query: 80  QGQGRKKPVEKSSDELDKELENYHAEAMQT 110
           +GQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 261 RGQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of PI0023430.1 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-25
Identity = 75/94 (79.79%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 21  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRG 80
           ESGR  +SN VNPFPGPSHRGGLR+   RGRGRG WSRG+G GGG    GGGRGRGRG G
Sbjct: 202 ESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSG 261

Query: 81  RGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 110
            GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 262 SGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of PI0023430.1 vs. NCBI nr
Match: XP_022935328.1 (THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex subunit 4D-like [Cucurbita moschata] >XP_022935330.1 THO complex subunit 4D-like [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-25
Identity = 74/94 (78.72%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 21  ESGRNATSNVVNPFPGPSHRGGLRN--ARGRGRGAWSRGVGLGGG---SGGGRGRGRGRG 80
           ESGR  +S+ VNPFPGPSHRGGLR+   RGRGRG WSRG+G GGG    GGGRGRGRG G
Sbjct: 202 ESGRTGSSHAVNPFPGPSHRGGLRSGRGRGRGRGGWSRGLGGGGGRGLGGGGRGRGRGSG 261

Query: 81  RGRGQGQGRKKPVEKSSDELDKELENYHAEAMQT 110
            GRG+GQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 262 SGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of PI0023430.1 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 34  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQ 93
           F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G GRG    G+
Sbjct: 209 FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGR 268

Query: 94  GRKKPVEKSSDELDKELENYHAEAM 108
           G KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 269 GGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of PI0023430.1 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.0e-06
Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 34  FPGPSHRGGLRNARGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGRGQ---GQ 93
           F G   RGG R  RGRG G   R +        G+  G GG RGRGRG G GRG    G+
Sbjct: 209 FIGQGVRGG-RVGRGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGR 268

Query: 94  GRKKPVEKSSDELDKELENYHAEAM 108
           G KKPVEKS+ +LDK+LE+YHAEAM
Sbjct: 269 GGKKPVEKSAADLDKDLESYHAEAM 292

[Close]

BLAST of PI0023430.1 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 )

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 56  RGVGLGGGSGGGRGRGRGR-GRGRGQGQGR-KKPVEKSSDELDKELENYHAEAMQT 110
           +G G+ GG GG R RGRG  GRGRG G+G  KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 224 QGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAMNT 279

[Close]

BLAST of PI0023430.1 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 )

HSP 1 Score: 47.4 bits (111), Expect = 8.7e-06
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 36  GPSHRGGLRNARGRGRGAW-----------SRGVGLGGGSGGGRGRGRGR-GRGRGQGQG 95
           G   RG +R  RG GRG              +G G+ GG GG R RGRG  GRGRG G+G
Sbjct: 202 GGGGRGRVRGGRG-GRGPAPTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRG 261

Query: 96  R-KKPVEKSSDELDKELENYHAEAMQT 110
             KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 262 NGKKPVEKSAADLDKDLESYHADAMNT 287

The following BLAST results are available for this feature:

BLAST of PI0023430.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94EH8	1.4e-05	54.12	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q6NQ72	1.2e-04	51.72	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]

BLAST of PI0023430.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCJ7	1.4e-32	94.38	FoP_duplication domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G30...	[more]
A0A1S3C452	1.6e-31	92.22	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]
A0A6J1J564	2.9e-25	73.08	THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=...	[more]
A0A6J1FAB9	2.9e-25	78.72	THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 S...	[more]
A0A6J1CP51	3.1e-19	73.03	THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 ...	[more]

BLAST of PI0023430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145851.1	3.0e-32	94.38	THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_...	[more]
XP_008457020.1	3.3e-31	92.22	PREDICTED: THO complex subunit 4D [Cucumis melo]	[more]
XP_038896761.1	2.4e-29	84.44	THO complex subunit 4D-like [Benincasa hispida]	[more]
XP_023527122.1	1.6e-25	79.79	THO complex subunit 4D [Cucurbita pepo subsp. pepo]	[more]
XP_022935328.1	6.0e-25	78.72	THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex sub...	[more]

BLAST of PI0023430.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66260.1	1.0e-06	54.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	1.0e-06	54.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G37720.2	2.3e-06	64.29	ALWAYS EARLY 4	[more]
AT5G37720.1	8.7e-06	51.72	ALWAYS EARLY 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 40..109 e-value: 1.5E-13 score: 61.1
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 48..104 e-value: 3.9E-8 score: 33.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0023430	PI0023430	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023430.1-exon	PI0023430.1-exon-chr06:14844156..14844378	exon
PI0023430.1-exon	PI0023430.1-exon-chr06:14845556..14845606	exon
PI0023430.1-exon	PI0023430.1-exon-chr06:14845928..14846711	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023430.1-cds	PI0023430.1-cds-chr06:14844156..14844378	CDS
PI0023430.1-cds	PI0023430.1-cds-chr06:14845556..14845606	CDS
PI0023430.1-cds	PI0023430.1-cds-chr06:14845928..14845983	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023430.1-five_prime_utr	PI0023430.1-five_prime_utr-chr06:14845984..14846711	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0023430.1	PI0023430.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding