PI0023357.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0023357.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 7068556 .. 7068949 (+)
Sequence length	234
RNA-Seq Expression	PI0023357.1
Synteny	PI0023357.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGCTCGTATGTGAGTTTTCAAGAACCATAAAGTTACATTTCATTGATTAAAAGAATTACCGTCATTTTTTTATTGTGTCCCTAAAAAGGGCCATCCGTACAAGTACCCAAAATCAGAAAGATCCCGCCGAATCGAACAGCGAGTTCCGAAACGTAGAGACCGAGCTGATTCCTTCGAAGTCGAAATCCGTCGCCACCCTCCTGACCGAAGTTCACGGCTGCGCCCTCTCCGCGGTGATATACAATTGCTAGATCGCTTTCATCTCCGACTATTCTCGAAGGCTTGCATTTGGAACGAGTTCAGGTTTGTCTTTTTTGTTGTTTAATGCCGCAGTTCTAATTCTGAATCTAGATTCAGAAATTCAGATTTGTTCTTGCTTCTTAGATAG

mRNA sequence

ATGACTAGCTCGTATGGCCATCCGTACAAGTACCCAAAATCAGAAAGATCCCGCCGAATCGAACAGCGAGTTCCGAAACGTAGAGACCGAGCTGATTCCTTCGAAGTCGAAATCCGTCGCCACCCTCCTGACCGAAGTTCACGGCTGCGCCCTCTCCGCGGTGATATACAATTGCTAGATCGCTTTCATCTCCGACTATTCTCGAAGGCTTGCATTTGGAACGAGTTCAGATAG

Coding sequence (CDS)

ATGACTAGCTCGTATGGCCATCCGTACAAGTACCCAAAATCAGAAAGATCCCGCCGAATCGAACAGCGAGTTCCGAAACGTAGAGACCGAGCTGATTCCTTCGAAGTCGAAATCCGTCGCCACCCTCCTGACCGAAGTTCACGGCTGCGCCCTCTCCGCGGTGATATACAATTGCTAGATCGCTTTCATCTCCGACTATTCTCGAAGGCTTGCATTTGGAACGAGTTCAGATAG

Protein sequence

MTSSYGHPYKYPKSERSRRIEQRVPKRRDRADSFEVEIRRHPPDRSSRLRPLRGDIQLLDRFHLRLFSKACIWNEFR

Homology

[Close]

BLAST of PI0023357.1 vs. ExPASy TrEMBL
Match: A0A0A0KH63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187940 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-05
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 11 YPKSERSRRIEQRVPKRRDRADSFEVEIRRHPPDRSSRLR 51
          Y +S+RSRRIEQRVPKRR RA SFEVEI R PP RSSR R
Sbjct: 25 YQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRSSRPR 64

[Close]

BLAST of PI0023357.1 vs. NCBI nr
Match: KGN47101.1 (hypothetical protein Csa_020902 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 8.3e-05
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 11 YPKSERSRRIEQRVPKRRDRADSFEVEIRRHPPDRSSRLR 51
          Y +S+RSRRIEQRVPKRR RA SFEVEI R PP RSSR R
Sbjct: 25 YQRSQRSRRIEQRVPKRRGRAHSFEVEIPRRPPGRSSRPR 64

The following BLAST results are available for this feature:

BLAST of PI0023357.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023357.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH63	4.0e-05	77.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187940 PE=4 SV=1	[more]

BLAST of PI0023357.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47101.1	8.3e-05	77.50	hypothetical protein Csa_020902 [Cucumis sativus]	[more]

BLAST of PI0023357.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..36

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0023357	PI0023357	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023357.1-exon	PI0023357.1-exon-chr11:7068556..7068570	exon
PI0023357.1-exon	PI0023357.1-exon-chr11:7068650..7068864	exon
PI0023357.1-exon	PI0023357.1-exon-chr11:7068946..7068949	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0023357.1-cds	PI0023357.1-cds-chr11:7068556..7068570	CDS
PI0023357.1-cds	PI0023357.1-cds-chr11:7068650..7068864	CDS
PI0023357.1-cds	PI0023357.1-cds-chr11:7068946..7068949	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0023357.1	PI0023357.1-protein	polypeptide