PI0022792.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0022792.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ribosome-recycling factor, chloroplastic
Location	chr05: 20231977 .. 20237951 (-)
Sequence length	1263
RNA-Seq Expression	PI0022792.1
Synteny	PI0022792.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTGTGAAGGACTTGAATTTGGACAAAGCAATGGCCTGCTTTTGAACTTCAAACCATTTCCTTTCCCCTTATCACCTTCGATTCTTTCATTTCCGTATCCATGGCCACGCCTTTCTCCGCCACCACCTCTGTCCGCCGTTCCATCTTCCAGAATCCCCCTCCCAAACCCCTCCTCTCACTTCGAGGTACGTTATTCTTCAACCCACAATTGCTTCCTCTTTCTACCTTTTCTCTTGGTTTCTTCATCCCCCAATGCCTCGTCTTCTAGATTATAATGGAGGGTTAACTTGCGTCAAATGCGGCTCCAGTACGGCACATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCAACAAGCCCTAGTGCTCTCTACCCAACTCTCTGTTTCTGGGAATGTGTTCAAAAACAGGCATGTATTTGACTTTTATTTCGTTTAGTTTTTTACGACCCTTGAGCCGTTGTGTGTACCTTGTGAATTGGTGTAAATTTGAACATCCTCTGTAGTGAAGTGGTAATGTGGGGCAGCACTCTACAAACATACAAGCATTTTGCTTTTGCATTTGTCTTATTGCCACGTGAAGTTGATTTTGGTAGTTTTTCCAGTTGTGTTGATCTTATATTGGCTCTGAATTTTTGTTTTTAGAAGGGGAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATTGAGAAAGATGTAGTAAGTTCATATTTTCATTGATGTGGAGACTTTCTGTGTATTATATTTAAGCAAGCTTACGCTAAGAAATAATCGTGCCAATGACCATCCAATTGTTCTCCAGAAAGCAAGGATGGAAAAGACTATTGATACTGTTCGGTCTAATTTCAGTTCAATTAGGACTGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTATATGGAAATTCTTAAATTTGGCTGGTTAGCGGATAGTTGCTTCATTATGAGACAAGTAACATGCTAATAATATGTGTTATGTACGAAACCGTCTGTCCTTTCATGAATTTTCAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGGTATTCAATGTGCCAGTTGGCTGAGTTGAATGTATTTAGGAACCTTTTTGGATATGTTAGTTGGTGCACCCTTAGGCACTATATGGCTTCACTTTTTCCAAATTCCTGTAGTTTTAGAATAGCTGTAAAATAATACATGGTGAATGTTACGATGACCTTTTACCACGTATCCTTGAAATTGAGGATCTTCAGGATCTTCCTTGTTCCTTTGTCCAATTCAAATTTGTAGATATTACTGTTCCTAGATTGCTTTTCTTTTAAGAGACCTACTCAAGGGCTTCAAAATTTTGTCATCGTAATTACTATTTTTATGAATAAGAACTGCAGACATTTTTTTGGAGCTTTTCAATCTTCTCTAATCTTGACTTACTGGTTGAGATTGCTATGGACATAAACATCCTCTTATTATTAGCTATAGAATGATGCCATCCAGCTGAACAGTGTAATGCATTTCTATAATGTCTCTTGGCAATCAGCATTAACTCTTAACGAGTCATCATCTTCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACGTCCGAAAGAAGAAAGGTATTTTCCTTTGTATTTGCTAAAAAATTTCCAACTAGACTACCATTAACCCTTTTCTATTTTTGCATTGTTTAATGCCAATTATGTAAGAACCAGTAGAAAACATTTTTTTCTCCATTATCTTTTGCACGTTCATCTTAAGATGCAGTTCTACAGTTCCTTGTCCAGTCTAATGATGATATAGTGAAAGAAGCAGTCTGCAATTACGCTTTGCAGAACATTGCTGTAAAATTCTTGTGGTTCTGTACCTATTCATGAAATTGAAGAGACTCACTTCCATTATTTAATTTCCTGCCTCGTTGAGATTAGAGTAGGTGGTCAATGGTGAATGTTATATTTTTCACTTTACCTAAGAAGCACAGACACTCAAGTTTTGTTAGCGTGTCCATGTTGGGCACATATTGCACACTTCTTAGCATAATGGTTGATAACTCGTTAAGAATACTAAATAGCCACATAATAATATTTGAGTATAGGACAAAATAATTCATGTAGAAGAGTGTGTGAGTTTTATTAATTCATTAAAACTCATGCAATACACTGATACAAGTCCTCTAAATAAATAGAATAAGTAGGCAAAATAATAACAGCTTTCAACTTAACTGACTAACTAATCCTCAACTAATTACATATAATACTCCTCCTCAAGTTGGGGTGTGAATGTCCTAAGCACCCCAACTTTCTTAAAATGGAGAAAATAAGGATGAGGCTAATGTCTTAGTGAAAGTGTCAGTTAGCTGTAAATTGAAACGAACAGAGAATAACTTAAGGAAATTCAACAAGTTTTTCATGAACCAAGTGATAGTCAATCTTTATGTTCTTGGTGCACTCGTGAAAGATCGGGTTTGAAGCTATGGAGACAGTGGCTTGATTGTCTCAATATATGAGAGCTGGAAAAACATGATCAAGATGTAAGTCTGCAAGAACCTGATTAATCCAAACCAATTCTTTGGTCACTACTGCAAGGGCATGATATTGAATTCCGCTGATGAACGTGATCCTTGCTTCTTTTACTTCCAAGATTTCAAGGATTCTCCAAAGAAAACACCGAAGTCTGTGACTGGTTTTCTGGTATCTACACATGCACCACAGTTAGCATCCACAAAGGATTTAGGCTGGAAGTTAGAAGTTGAGAAGTTGGCTTCAATAAAACCACTTGGCTAGGTGCCTTCTTCAGGTGACGAAGAAGCTGGTGAGCAACATTCATATGTTGAGTAGTAGGTTTTTGAAGAACTTGACTTAGGCAGTGGACTGAAAAAGAAATATCAGGTTGAGAGATAGGTATAACAACCGTCCAATCAATCTTTGGTAACAAGATGCATCATCAAGAGATAATTTGTGCCACTGTCCTAAGAAAGATGAAGATTGGGGGGATCCATGAGCCGGCTTTGCTTCAAGGAAGTTAGTATCTTCAAGTATTTGCAAACAATACTTCCTTTGTGAGAGAAATAATCCTTGTTTGGATTGGGAAATCTCCAGCCCAAGAAAGTATTTCCCATGTACCAAATCTTTAAGCATGAAATTGGATTTTAACATTTGCTTCATCGAGTCAATTTCAGAAACACAAGGCCTGAAATTGAATGTCATCGACATATTATAATGCAACAAAACGACTTCTAGATGTTGAGTGAATAATGAACAATTTGATTTAGATTGAGTAAATTTGTGAACCATTGAGCATGGAATAGTTCGATCTCATATTTTAAGCATATAACCCACAAAGTTATTGCTTTTGGATTTCAATCTTGTATAAAAATTTTGGGCAAACATCAATTTATACCCCTAAACTTTTGGGATTGTATCAATTAAAACCTCAATCTAATAATTGTATTAATTTAATCCCTAAACTTTCTTTAGTGAATGAATTTATATCCTATAGATATTAGCGGGTTTTATTTAATCAGTGTGTCTTCCTCTATTTTGCTTTACTTATTTAGAAATAATTGTTTGATATTCTTCTTGCTTCTTTGGTGGGATTTTGGAAGAATAATTACTTTTATTTTTGTGATTTTGAGTTGATTTTAAACAGATTGAAGTGAAAATAACAACAGATCACAAACAAATGGTCTATATATTGATTCATTTATAGAAATTTAGAGTTTAAATTGATACAATTATCAGTTTGAAGTTTGTATTGATCTTTCTATTGATACACATTCAAAGTTTAGGGTAATTCAATATTTGCCAAAATATTTTAATAAATGTGTCTTTGCATTGTCCTTGTCCTAGATTTGTAAACAATGATGTCACTTTGTCTGTATCTATGATTCTTAGATGACCCAATAAAAATATCTTATGTTATTGTGATTTCTACAATTTATTGTAAATTCCAAATGTTTAAGGCTTTAAGCTCAATGTGTCAAAAATCAAAATGTGTGGGACACTAATGGAAAGTTACATATTATTAGCATTTCCTTTGGGGAAATGTAAATTTTTTCATTCCGTCTTTTAATACCTATTGTTTTTTAATTTTGATAATTTGGGGGCAAAATAGGAAGACGATTTAAAAATCTGTAACTTTTTATATACTTTTTCAATCCATATGATCCCTCTTTTATTTTTCTTTATTTTTTTTTCTTCACCTTTGTGCTCGGTGATATATTTGGCTACTTCACATTCAGGAGCTGTCAAAAGTTGTTGCAAAGCAGGCAGAGGAAGGGAAGGTATGTATCATATTTTTGCGTTAGTACAAAGGGGTTGAGTTTGGAAATAGATTGAGATATATGTTCTGATGTAGATTGCTATTGAGTTTCTACTTCAAGACTTTTGGGATTTATGCTTAAACAGCCACTGATCATAAACTCTTGGTTCTGCATCTGCCTGTTTACAGGTGGCAGTAAGGAATATAAGAAGAGATGCTTTAAAAGCGTATGAAAAATTGGAAAAGGTTTGAAACACATACATCTTCATATCTTAATCTTATGGTTCTTCTGCTTCTAAGTCCTATTGATCTGCCTTCCAAGAGCACGCTCCTTTCTCTATTGTATAGTTTTTGCGCTTACACTGGTTTCCTTGAATGTTTTGTTCTTGTTTCAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGGTTTGTTGTTGCTTCTGAACTCAGTCATTTAGAGCTTTTGGCCCTACTTCAGTTATTTTCTATTAAAATTCGAGTAAGTTCACACAAGATGATAGAAAGGAGTGGAGGATGTAATTCCCTGGTGAAGGCATCAAACCTTGGAAAGGTTGTACTAAATTCGAAAGCACAAGTTGTGAAAACATTTTGTAATCATTGCATAGAATGGATTTTAAGTTATCCTGCATATTACCATGCTTATGTTCCCCAAGACTGTCAATTTTTTTCTTGTAGCTGTTAAACGTTGAATTCATATATTAGGGGTTTTATTTCTCACTTCCCCCTTATTTTGAGCATCCCAAGTTAAGATGATTTCTTTGTGCAGAAACTGACCGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGTATGGTCTATCTAGATTGAATTGAAGTGTGCTTTTAATAATTCAAAATCAATTTTAATAGAATGAAAAATACATTTAATAGTGTAAAATTAAACATCAAGTCAATTTGAGTAATTAAAAGTATATTTCAGAATAATTTTAAATATGACAAAACTGATTTTAATAATTTCAAAATCACTTTCAAACATGCATTTAATCGTGAAACCAAACACACATATCGGTAGGATTTGAGTTAGGATCTACATTTCACAGAGTTTTTGCAAGATCACTCACTAAACCTATTTGATTAGTCACAATAGTTTTTGACACGTTTCTTGTATGTTCGTAACACTATGACAACCTAACCAACATGTGTTTGTATTGCATTTCAGGAGTTGTTGAAGGTATGACCAAAAGCAAATGGTAGAGAGCTTTCCCTTTTGATTGCTGTGAAATATGAAATCATTGTTCTTTTTTTCCCCTTGAATAGAGTTTTGATGTCAATTGTTAGAATCAATCAAACATCTTTCTTTTTTGGTTGAAATGAGAGTCAGCAGTCTTGTGGGAAAAGGTATTGAGCTAGCAATTGCATTATGCCTTTGGTTTTGTTGTAAAATTGGCACATCTCGAACTTCTCACTTTGTACATTGGAACTGACATTATCATTTACTCATTTGGATTCGACCATTGGCTGTTGAACTTTAATTCAATCACTCTATTGAATTACCCAATCG

mRNA sequence

CAACTGTGAAGGACTTGAATTTGGACAAAGCAATGGCCTGCTTTTGAACTTCAAACCATTTCCTTTCCCCTTATCACCTTCGATTCTTTCATTTCCGTATCCATGGCCACGCCTTTCTCCGCCACCACCTCTGTCCGCCGTTCCATCTTCCAGAATCCCCCTCCCAAACCCCTCCTCTCACTTCGAGATTATAATGGAGGGTTAACTTGCGTCAAATGCGGCTCCAGTACGGCACATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCAACAAGCCCTAGTGCTCTCTACCCAACTCTCTGTTTCTGGGAATGTGTTCAAAAACAGAAGGGGAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATTGAGAAAGATGTAAAAGCAAGGATGGAAAAGACTATTGATACTGTTCGGTCTAATTTCAGTTCAATTAGGACTGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACGTCCGAAAGAAGAAAGGAGCTGTCAAAAGTTGTTGCAAAGCAGGCAGAGGAAGGGAAGGTGGCAGTAAGGAATATAAGAAGAGATGCTTTAAAAGCGTATGAAAAATTGGAAAAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGAAACTGACCGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGAGTTGTTGAAGGTATGACCAAAAGCAAATGGTAGAGAGCTTTCCCTTTTGATTGCTGTGAAATATGAAATCATTGTTCTTTTTTTCCCCTTGAATAGAGTTTTGATGTCAATTGTTAGAATCAATCAAACATCTTTCTTTTTTGGTTGAAATGAGAGTCAGCAGTCTTGTGGGAAAAGGTATTGAGCTAGCAATTGCATTATGCCTTTGGTTTTGTTGTAAAATTGGCACATCTCGAACTTCTCACTTTGTACATTGGAACTGACATTATCATTTACTCATTTGGATTCGACCATTGGCTGTTGAACTTTAATTCAATCACTCTATTGAATTACCCAATCG

Coding sequence (CDS)

ATGGCCACGCCTTTCTCCGCCACCACCTCTGTCCGCCGTTCCATCTTCCAGAATCCCCCTCCCAAACCCCTCCTCTCACTTCGAGATTATAATGGAGGGTTAACTTGCGTCAAATGCGGCTCCAGTACGGCACATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCAACAAGCCCTAGTGCTCTCTACCCAACTCTCTGTTTCTGGGAATGTGTTCAAAAACAGAAGGGGAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATTGAGAAAGATGTAAAAGCAAGGATGGAAAAGACTATTGATACTGTTCGGTCTAATTTCAGTTCAATTAGGACTGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACGTCCGAAAGAAGAAAGGAGCTGTCAAAAGTTGTTGCAAAGCAGGCAGAGGAAGGGAAGGTGGCAGTAAGGAATATAAGAAGAGATGCTTTAAAAGCGTATGAAAAATTGGAAAAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGAAACTGACCGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGAGTTGTTGAAGGTATGA

Protein sequence

MATPFSATTSVRRSIFQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLNQQALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFSSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV

Homology

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BLAST of PI0022792.1 vs. ExPASy Swiss-Prot
Match: Q9M1X0 (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RRF PE=2 SV=2)

HSP 1 Score: 318.2 bits (814), Expect = 9.5e-86
Identity = 190/283 (67.14%), Postives = 224/283 (79.15%), Query Frame = 0


Query: 1   MATPFSATTSVRRSI-FQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLN 60
           MA  FS+T      + F+    KPLLSL D     +C++  SS     +   A ++    
Sbjct: 1   MAASFSSTAPTTPVLRFRANYSKPLLSLPD-----SCLRIISSAISPSTRLIACSF---K 60

Query: 61  QQALVLSTQLSVSGNVFKNR----RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRS 120
              L L   +++SG     R    R V+R+ATIEEIEAEK+ IE DVK++MEKTI+T+R+
Sbjct: 61  TDKLPLGAGVNLSGGPVVKRSLQKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRT 120

Query: 121 NFSSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAI 180
           +F+SIRTGRSN AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAI
Sbjct: 121 SFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAI 180

Query: 181 VNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKL 240
           VNSDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL
Sbjct: 181 VNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKL 240

Query: 241 EKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           EKEKKLSEDNVKDLSSDLQKL D YMKKI+ LYKQKEKEL+KV
Sbjct: 241 EKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

[Close]

BLAST of PI0022792.1 vs. ExPASy Swiss-Prot
Match: P82231 (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea OX=3562 GN=RRF PE=1 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.8e-85
Identity = 168/246 (68.29%), Postives = 211/246 (85.77%), Query Frame = 0


Query: 33  GLTCVKCGSSTAHLCSWKSASNYVRLNQQALVLSTQLSVSGNVFKNRRGVVRAATIEEIE 92
           G++ ++C  +  ++  W+S++NYVR++      S + +V     +NR G  R AT+EE+E
Sbjct: 27  GVSDMECNIARTNVSVWRSSANYVRMDCGVKKFSGK-AVVVKQLQNRAGTFRCATMEEVE 86

Query: 93  AEKTLIEKDVKARMEKTIDTVRSNFSSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQIST 152
           AEK+LIE + K RMEKTI+T+RSNF+S+RT R++P MLD+IEVEYYG+PVSLKSIAQIST
Sbjct: 87  AEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQIST 146

Query: 153 PDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAK 212
           PDASSLL+ PYDKSSLK+IEKAIV S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K
Sbjct: 147 PDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSK 206

Query: 213 QAEEGKVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKE 272
            AEEGKVAVRNIRRDALK+YEKLEKEKKLSEDNVKDLS+DLQKLTD+YMKK++ +YKQKE
Sbjct: 207 LAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKE 266

Query: 273 KELLKV 279
           +EL+KV
Sbjct: 267 QELMKV 271

[Close]

BLAST of PI0022792.1 vs. ExPASy Swiss-Prot
Match: P37706 (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota OX=4039 GN=RRF PE=2 SV=2)

HSP 1 Score: 305.4 bits (781), Expect = 6.4e-82
Identity = 162/230 (70.43%), Postives = 200/230 (86.96%), Query Frame = 0


Query: 49  WKSASNYVRLNQQALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEK 108
           W +A+NYV++       + +  V   + + R G ++ AT+EEIEAEK+LIEK VK RMEK
Sbjct: 1   WTAAANYVKIKVGTGKFARKTVV---LSQKRTGTLKCATMEEIEAEKSLIEKSVKERMEK 60

Query: 109 TIDTVRSNFSSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSL 168
           TI+ V+++F+SIRT RSNP MLDKI+VEYYG+P SLKSIAQISTPD+SSLLV PYDKSSL
Sbjct: 61  TIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSL 120

Query: 169 KSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 228
           K IEKAIVNSDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+RNIRRDA
Sbjct: 121 KDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDA 180

Query: 229 LKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           +K+Y+KLEKEKKLSEDNVKDLSSDLQK+ D+Y+KK+D ++KQKEKEL+ V
Sbjct: 181 IKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227

[Close]

BLAST of PI0022792.1 vs. ExPASy Swiss-Prot
Match: A2YMU2 (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 288.1 bits (736), Expect = 1.1e-76
Identity = 152/228 (66.67%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 51  SASNYVRLNQQALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTI 110
           S++N++ L    +   ++  +  N   ++R V+R ATIEEIEAEK++IE   + RMEK I
Sbjct: 41  SSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAI 100

Query: 111 DTVRSNFSSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKS 170
           +TV++NF+++RTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK 
Sbjct: 101 ETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKL 160

Query: 171 IEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALK 230
           IEK IV ++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+K
Sbjct: 161 IEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIK 220

Query: 231 AYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           AY+KLEKEKKLSEDNVKDLS+DLQK+TD+YMKKI+ + KQKE+EL+K+
Sbjct: 221 AYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

[Close]

BLAST of PI0022792.1 vs. ExPASy Swiss-Prot
Match: A3BLC3 (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 288.1 bits (736), Expect = 1.1e-76
Identity = 152/228 (66.67%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 51  SASNYVRLNQQALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTI 110
           S++N++ L    +   ++  +  N   ++R V+R ATIEEIEAEK++IE   + RMEK I
Sbjct: 41  SSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAI 100

Query: 111 DTVRSNFSSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKS 170
           +TV++NF+++RTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK 
Sbjct: 101 ETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKL 160

Query: 171 IEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALK 230
           IEK IV ++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+K
Sbjct: 161 IEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIK 220

Query: 231 AYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           AY+KLEKEKKLSEDNVKDLS+DLQK+TD+YMKKI+ + KQKE+EL+K+
Sbjct: 221 AYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

[Close]

BLAST of PI0022792.1 vs. ExPASy TrEMBL
Match: A0A1S3BMN4 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322 PE=3 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 9.1e-140
Identity = 269/278 (96.76%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIFQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLNQ 60
           MATPFSATTS+RRS+F NPPPKPLLSLRDYNGGL CVKCGSS+AHLCSWKSASNYVRLNQ
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQ 60

Query: 61  QALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFSSI 120
           +AL+LSTQLSVSGNV KNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF+SI
Sbjct: 61  RALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of PI0022792.1 vs. ExPASy TrEMBL
Match: A0A0A0KJG4 (Ribosome-recycling factor, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G410660 PE=3 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 5.0e-138
Identity = 267/278 (96.04%), Postives = 273/278 (98.20%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIFQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLNQ 60
           MATPFSAT S+RRS+FQNPPPK LLSLRDYNGGL CVKCGS TAHLCSWKSASNYVRLN+
Sbjct: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60

Query: 61  QALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFSSI 120
           QALV+STQLSVSGNVFKNRR VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF+SI
Sbjct: 61  QALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           G+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of PI0022792.1 vs. ExPASy TrEMBL
Match: A0A1S3BMY6 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322 PE=3 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 8.5e-138
Identity = 268/278 (96.40%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIFQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLNQ 60
           MATPFSATTS+RRS+F NPPPKPLLSLRDYNGGL CVKCGSS+AHLCSWKSASNYVRLNQ
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQ 60

Query: 61  QALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFSSI 120
           +AL+LSTQLSVSGNV KN RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF+SI
Sbjct: 61  RALLLSTQLSVSGNVLKN-RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of PI0022792.1 vs. ExPASy TrEMBL
Match: A0A6J1ESI6 (Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437377 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 9.4e-121
Identity = 239/281 (85.05%), Postives = 260/281 (92.53%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIF---QNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVR 60
           MATPFS+TTS+ RS+F   Q PPPK LLS+RDYN GL C+KCGS+T  L SWKSASNY+R
Sbjct: 1   MATPFSSTTSL-RSVFRPKQIPPPKALLSIRDYNAGLNCIKCGSTTTPLSSWKSASNYIR 60

Query: 61  LNQQALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF 120
           + + AL+L TQ   SGN+ K RRGV+RAATIEEIEAEK LIEKDV+ARMEKTIDTVRS+F
Sbjct: 61  IRRHALMLPTQPFQSGNLSKYRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSF 120

Query: 121 SSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN 180
           +SIRTGR+NPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLKSIEKAIVN
Sbjct: 121 NSIRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVN 180

Query: 181 SDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEK 240
           S+LG+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAY+KLEK
Sbjct: 181 SNLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYDKLEK 240

Query: 241 EKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           EKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 EKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 280

[Close]

BLAST of PI0022792.1 vs. ExPASy TrEMBL
Match: A0A6J1DZ32 (Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025588 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.7e-120
Identity = 242/280 (86.43%), Postives = 262/280 (93.57%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIFQ--NPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRL 60
           MATPFS T SV RS+FQ  +   + LLSLRDYNGGL CVKCG +TAH+ SW SA+NYVRL
Sbjct: 1   MATPFS-TISV-RSVFQPKHNRARALLSLRDYNGGLNCVKCGLNTAHVYSWNSAANYVRL 60

Query: 61  NQQALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFS 120
            + AL++S+ + VSG++ KNRRGVV+AATIEEIEAEKTLIEKDV++RMEKTIDTVRSNF+
Sbjct: 61  KRHALMISSHVIVSGSLLKNRRGVVKAATIEEIEAEKTLIEKDVRSRMEKTIDTVRSNFN 120

Query: 121 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 180
           SIRTGR+NP+MLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS
Sbjct: 121 SIRTGRANPSMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 180

Query: 181 DLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE 240
           DLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE
Sbjct: 181 DLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKE 240

Query: 241 KKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           KKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 KKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 278

[Close]

BLAST of PI0022792.1 vs. NCBI nr
Match: XP_008449432.1 (PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 506.1 bits (1302), Expect = 1.9e-139
Identity = 269/278 (96.76%), Postives = 275/278 (98.92%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIFQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLNQ 60
           MATPFSATTS+RRS+F NPPPKPLLSLRDYNGGL CVKCGSS+AHLCSWKSASNYVRLNQ
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQ 60

Query: 61  QALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFSSI 120
           +AL+LSTQLSVSGNV KNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF+SI
Sbjct: 61  RALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of PI0022792.1 vs. NCBI nr
Match: XP_004140097.1 (ribosome-recycling factor, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 500.4 bits (1287), Expect = 1.0e-137
Identity = 267/278 (96.04%), Postives = 273/278 (98.20%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIFQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLNQ 60
           MATPFSAT S+RRS+FQNPPPK LLSLRDYNGGL CVKCGS TAHLCSWKSASNYVRLN+
Sbjct: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60

Query: 61  QALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFSSI 120
           QALV+STQLSVSGNVFKNRR VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF+SI
Sbjct: 61  QALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           G+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of PI0022792.1 vs. NCBI nr
Match: XP_008449433.1 (PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 499.6 bits (1285), Expect = 1.8e-137
Identity = 268/278 (96.40%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIFQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLNQ 60
           MATPFSATTS+RRS+F NPPPKPLLSLRDYNGGL CVKCGSS+AHLCSWKSASNYVRLNQ
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQ 60

Query: 61  QALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFSSI 120
           +AL+LSTQLSVSGNV KN RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF+SI
Sbjct: 61  RALLLSTQLSVSGNVLKN-RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of PI0022792.1 vs. NCBI nr
Match: XP_011657524.1 (ribosome-recycling factor, chloroplastic isoform X2 [Cucumis sativus] >KGN48187.2 hypothetical protein Csa_004124 [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 5.6e-136
Identity = 266/278 (95.68%), Postives = 272/278 (97.84%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIFQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLNQ 60
           MATPFSAT S+RRS+FQNPPPK LLSLRDYNGGL CVKCGS TAHLCSWKSASNYVRLN+
Sbjct: 1   MATPFSATASIRRSLFQNPPPKSLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLNR 60

Query: 61  QALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFSSI 120
           QALV+STQLSVSGNVFKNR  VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF+SI
Sbjct: 61  QALVISTQLSVSGNVFKNRL-VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSI 120

Query: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180
           RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL
Sbjct: 121 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDL 180

Query: 181 GLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240
           G+TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK
Sbjct: 181 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKK 240

Query: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 LSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of PI0022792.1 vs. NCBI nr
Match: XP_038888223.1 (ribosome-recycling factor, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 494.2 bits (1271), Expect = 7.4e-136
Identity = 266/281 (94.66%), Postives = 273/281 (97.15%), Query Frame = 0


Query: 1   MATPFSATTSVRRSIF---QNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVR 60
           MATPFS+TTSVRRS+F   QNPPPK LLSLRDYN GL CVKCGSST HLCSWKSASNYVR
Sbjct: 1   MATPFSSTTSVRRSVFQLTQNPPPKALLSLRDYNAGLNCVKCGSSTTHLCSWKSASNYVR 60

Query: 61  LNQQALVLSTQLSVSGNVFKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF 120
           L++QALVLSTQLSVSGN+ KNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF
Sbjct: 61  LHRQALVLSTQLSVSGNLLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF 120

Query: 121 SSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN 180
           +SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN
Sbjct: 121 NSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN 180

Query: 181 SDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEK 240
           SDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEK
Sbjct: 181 SDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEK 240

Query: 241 EKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           EKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 EKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 281

[Close]

BLAST of PI0022792.1 vs. TAIR 10
Match: AT3G63190.1 (ribosome recycling factor, chloroplast precursor )

HSP 1 Score: 318.2 bits (814), Expect = 6.7e-87
Identity = 190/283 (67.14%), Postives = 224/283 (79.15%), Query Frame = 0


Query: 1   MATPFSATTSVRRSI-FQNPPPKPLLSLRDYNGGLTCVKCGSSTAHLCSWKSASNYVRLN 60
           MA  FS+T      + F+    KPLLSL D     +C++  SS     +   A ++    
Sbjct: 1   MAASFSSTAPTTPVLRFRANYSKPLLSLPD-----SCLRIISSAISPSTRLIACSF---K 60

Query: 61  QQALVLSTQLSVSGNVFKNR----RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRS 120
              L L   +++SG     R    R V+R+ATIEEIEAEK+ IE DVK++MEKTI+T+R+
Sbjct: 61  TDKLPLGAGVNLSGGPVVKRSLQKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRT 120

Query: 121 NFSSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAI 180
           +F+SIRTGRSN AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAI
Sbjct: 121 SFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAI 180

Query: 181 VNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKL 240
           VNSDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL
Sbjct: 181 VNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKL 240

Query: 241 EKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 279
           EKEKKLSEDNVKDLSSDLQKL D YMKKI+ LYKQKEKEL+KV
Sbjct: 241 EKEKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

[Close]

BLAST of PI0022792.1 vs. TAIR 10
Match: AT3G01800.1 (Ribosome recycling factor )

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-22
Identity = 65/178 (36.52%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 98  IEKDVKARMEKTIDTVRSNFSSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASS 157
           ++    ++ME  ID +  + + +RTGR+ P MLD I VE  G  + L  +A +S  D  +
Sbjct: 89  VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148

Query: 158 LLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 217
           L V PYD  ++K +EKAIV S LGL P  DG+ +  ++P LT E  + + K+V K +E  
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208

Query: 218 KVAVRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKEL 276
           K ++R  R+ AL   +K      L +D VK L  ++ +LT  ++K  + + K KEKE+
Sbjct: 209 KQSIRRARQKALDTIKK--AGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEI 264

The following BLAST results are available for this feature:

BLAST of PI0022792.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1X0	9.5e-86	67.14	Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RRF ...	[more]
P82231	2.8e-85	68.29	Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea OX=3562 GN=RRF PE=...	[more]
P37706	6.4e-82	70.43	Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota OX=4039 GN=...	[more]
A2YMU2	1.1e-76	66.67	Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica OX=39946 ...	[more]
A3BLC3	1.1e-76	66.67	Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of PI0022792.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BMN4	9.1e-140	96.76	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322...	[more]
A0A0A0KJG4	5.0e-138	96.04	Ribosome-recycling factor, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G410...	[more]
A0A1S3BMY6	8.5e-138	96.40	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322...	[more]
A0A6J1ESI6	9.4e-121	85.05	Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DZ32	4.7e-120	86.43	Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of PI0022792.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449432.1	1.9e-139	96.76	PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_004140097.1	1.0e-137	96.04	ribosome-recycling factor, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_008449433.1	1.8e-137	96.40	PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_011657524.1	5.6e-136	95.68	ribosome-recycling factor, chloroplastic isoform X2 [Cucumis sativus] >KGN48187....	[more]
XP_038888223.1	7.4e-136	94.66	ribosome-recycling factor, chloroplastic isoform X1 [Benincasa hispida]	[more]

BLAST of PI0022792.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63190.1	6.7e-87	67.14	ribosome recycling factor, chloroplast precursor	[more]
AT3G01800.1	1.2e-22	36.52	Ribosome recycling factor	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 225..259
None	No IPR available	GENE3D	3.30.1360.40		coord: 124..198 e-value: 5.2E-70 score: 236.4
None	No IPR available	PANTHER	PTHR20982:SF3	MITOCHONDRIAL RIBOSOME RECYCLING FACTOR	coord: 36..277
IPR036191	RRF superfamily	GENE3D	1.10.132.20		coord: 105..275 e-value: 5.2E-70 score: 236.4
IPR036191	RRF superfamily	SUPERFAMILY	55194	Ribosome recycling factor, RRF	coord: 98..277
IPR002661	Ribosome recycling factor	TIGRFAM	TIGR00496	TIGR00496	coord: 103..278 e-value: 6.1E-67 score: 222.6
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 36..277
IPR002661	Ribosome recycling factor	HAMAP	MF_00040	RRF	coord: 96..278 score: 26.413116
IPR002661	Ribosome recycling factor	CDD	cd00520	RRF	coord: 98..276 e-value: 1.32966E-80 score: 239.084
IPR023584	Ribosome recycling factor domain	PFAM	PF01765	RRF	coord: 115..276 e-value: 1.6E-61 score: 207.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0022792	PI0022792	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0022792.1-exon	PI0022792.1-exon-chr05:20231977..20232318	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20232690..20232746	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20233108..20233158	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20233308..20233364	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20233532..20233573	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20236195..20236306	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20236813..20236910	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20237028..20237123	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20237227..20237296	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20237531..20237681	exon
PI0022792.1-exon	PI0022792.1-exon-chr05:20237765..20237951	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0022792.1-three_prime_utr	PI0022792.1-three_prime_utr-chr05:20231977..20232300	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0022792.1-cds	PI0022792.1-cds-chr05:20232301..20232318	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20232690..20232746	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20233108..20233158	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20233308..20233364	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20233532..20233573	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20236195..20236306	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20236813..20236910	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20237028..20237123	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20237227..20237296	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20237531..20237681	CDS
PI0022792.1-cds	PI0022792.1-cds-chr05:20237765..20237849	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0022792.1-five_prime_utr	PI0022792.1-five_prime_utr-chr05:20237850..20237951	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0022792.1	PI0022792.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0043023	ribosomal large subunit binding