PI0022784.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0022784.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionStress response protein nst1
Locationchr04: 18941902 .. 18942090 (-)
Sequence length189
RNA-Seq ExpressionPI0022784.1
SyntenyPI0022784.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAACTAGTGTGTTTGGAATGGGGATGGGGAGTGTTTTGATAATGCTTGTGGTCGTTGGACTTGTTCTGTTTCTGCCGCTGGTGGTCGGTTCCCTTCAACCGCCGTCCGGCTTCCTACTCCTCCTTTTTCCGGTCACGCTCGCCGCCGTGTTCTTCATCCTCTCACGTGCGTCCTCCCATTGA

mRNA sequence

ATGGAAGAAACTAGTGTGTTTGGAATGGGGATGGGGAGTGTTTTGATAATGCTTGTGGTCGTTGGACTTGTTCTGTTTCTGCCGCTGGTGGTCGGTTCCCTTCAACCGCCGTCCGGCTTCCTACTCCTCCTTTTTCCGGTCACGCTCGCCGCCGTGTTCTTCATCCTCTCACGTGCGTCCTCCCATTGA

Coding sequence (CDS)

ATGGAAGAAACTAGTGTGTTTGGAATGGGGATGGGGAGTGTTTTGATAATGCTTGTGGTCGTTGGACTTGTTCTGTTTCTGCCGCTGGTGGTCGGTTCCCTTCAACCGCCGTCCGGCTTCCTACTCCTCCTTTTTCCGGTCACGCTCGCCGCCGTGTTCTTCATCCTCTCACGTGCGTCCTCCCATTGA

Protein sequence

MEETSVFGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILSRASSH
Homology
BLAST of PI0022784.1 vs. ExPASy TrEMBL
Match: A0A5A7T8Q7 (Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001370 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1  MEETSVFGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60
          MEETSVF  GMGSVLIMLVVVGLVLFLPL++GSLQPPSGFLLLLFPVTLAAVFFILSRAS
Sbjct: 1  MEETSVF--GMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60

Query: 61 SH 63
          SH
Sbjct: 61 SH 60

BLAST of PI0022784.1 vs. ExPASy TrEMBL
Match: A0A1S3BHY2 (uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1  MEETSVFGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60
          MEETSVF  GMGSVLIMLVVVGLVLFLPL++GSLQPPSGFLLLLFPVTLAAVFFILSRAS
Sbjct: 1  MEETSVF--GMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60

Query: 61 SH 63
          SH
Sbjct: 61 SH 60

BLAST of PI0022784.1 vs. ExPASy TrEMBL
Match: A0A2P5EXP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 10 GMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILSRASS 62
          G+ SV+++LVV  L+LFLPL +G +QPPS F LL+FP+ L  VF +LSRASS
Sbjct: 40 GVVSVVMILVVAALLLFLPLGMGPVQPPSAFTLLIFPLVLLVVFILLSRASS 91

BLAST of PI0022784.1 vs. NCBI nr
Match: XP_008447644.1 (PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 stress response protein nst1 [Cucumis melo var. makuwa] >TYK09825.1 stress response protein nst1 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1  MEETSVFGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60
          MEETSVF  GMGSVLIMLVVVGLVLFLPL++GSLQPPSGFLLLLFPVTLAAVFFILSRAS
Sbjct: 1  MEETSVF--GMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60

Query: 61 SH 63
          SH
Sbjct: 61 SH 60

BLAST of PI0022784.1 vs. NCBI nr
Match: XP_011652820.1 (uncharacterized protein LOC105435116 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 4.5e-17
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MEETSVFGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60
          MEET VF  GMGSVLIMLVVVGLVL LPLV+GSLQPPSGFLLLLFPVTLAAVFFILSRAS
Sbjct: 1  MEETGVF--GMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60

Query: 61 SH 63
          SH
Sbjct: 61 SH 60

BLAST of PI0022784.1 vs. NCBI nr
Match: XP_038888108.1 (uncharacterized protein LOC120078008 [Benincasa hispida])

HSP 1 Score: 94.0 bits (232), Expect = 5.0e-16
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MEETSVFGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60
          ME+TSVF  GMGSVL+MLVVVGLVLFLPLV+GSLQPPSG LLL+FPVTLAAVFF LSRAS
Sbjct: 1  MEKTSVF--GMGSVLMMLVVVGLVLFLPLVIGSLQPPSGLLLLIFPVTLAAVFFFLSRAS 60

Query: 61 SH 63
          SH
Sbjct: 61 SH 60

BLAST of PI0022784.1 vs. NCBI nr
Match: KAE8650841.1 (hypothetical protein Csa_017605, partial [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 6.1e-14
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 1  MEETSVFGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILS 58
          MEET VF  GMGSVLIMLVVVGLVL LPLV+GSLQPPSGFLLLLFPVTLAAVFFILS
Sbjct: 1  MEETGVF--GMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILS 55

BLAST of PI0022784.1 vs. NCBI nr
Match: KAG7011309.1 (hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 8.7e-13
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MEETSVFGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFILSRAS 60
           M E SV   GMGSVLIMLVVVG +LFLPLV+GS+QPPSG +LL+FPVTLAAVFF+LSRAS
Sbjct: 52  MGENSV--CGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRAS 111

Query: 61  SH 63
           S+
Sbjct: 112 SN 111

BLAST of PI0022784.1 vs. TAIR 10
Match: AT4G14315.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 40.0 bits (92), Expect = 7.9e-04
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 7  FGMGMGSVLIMLVVVGLVLFLPLVVGSLQPPSGFLLLLFPVTLAAVFFIL 57
          +G GMGSVL ++VV  ++LF+PL++G +  PS  ++L+FPV L  VF  L
Sbjct: 5  YGFGMGSVLAIVVVALMLLFVPLMMGPVTAPSLPMILMFPVVLLFVFLYL 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T8Q73.3e-1893.55Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3BHY23.3e-1893.55uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=... [more]
A0A2P5EXP01.2e-0459.62Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV... [more]
Match NameE-valueIdentityDescription
XP_008447644.16.9e-1893.55PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 str... [more]
XP_011652820.14.5e-1791.94uncharacterized protein LOC105435116 [Cucumis sativus][more]
XP_038888108.15.0e-1687.10uncharacterized protein LOC120078008 [Benincasa hispida][more]
KAE8650841.16.1e-1491.23hypothetical protein Csa_017605, partial [Cucumis sativus][more]
KAG7011309.18.7e-1377.42hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT4G14315.17.9e-0448.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0022784PI0022784gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0022784.1-exonPI0022784.1-exon-chr04:18941902..18942090exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0022784.1-cdsPI0022784.1-cds-chr04:18941902..18942090CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0022784.1PI0022784.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane