PI0021746.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0021746.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	MMS19 nucleotide excision repair protein
Location	chr01: 29103491 .. 29104172 (+)
Sequence length	201
RNA-Seq Expression	PI0021746.1
Synteny	PI0021746.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTATGAAGTATTTTTCTTGATCCGTCATTTTATTGTCTATTACTGTTTCCACTATCTGCCTTTTGCTTTCACACGTAACGTCCTCTCCCCAATTTGTACCTAGTTTTCCTTGCATGATCCGGAGGTCTGAACTTTCTCAGTTTTAAACATTTAATGGTTTTTTATTGGCTGACGCCGAACTACGACTTTGCTGTTATCAAAGTTCAATTAGTATAATTTTTAGTGGCTGTATTTTTGCAATAGAGATGATGCTGGTATATTACACTAATGTACTAAAACCTGAAGCACATGCATTATCCAGCTCGTACGAGAAACTGCAATTCAGTGCCTTGTCGCTGTGTCTGAACTGCCCCATGCGACGATATACCCCATGAGAAGACAGGTATCCAGATGGTTATTCCTTGCAATCATTGATCTGGGACTGCTATTAATCCTGCTTAAGATGTTCAATACTGTTCTGCCGTTTCAGGTACTGCACGCAATATCTAAAGCTCTTGATGATCCAAAGAGAGCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGTCAGTGCTCCGTGATGGATTTATGATTCTATAGCACTTTACCGGTAGTTACTAGCGGAAGGTACTAAATTCATGTCATAATTTCACCAACAGGGCATCAATTGCATCAAGAAGTCTTCATTTCTAA

mRNA sequence

ATGATGCTCGTACGAGAAACTGCAATTCAGTGCCTTGTCGCTGTGTCTGAACTGCCCCATGCGACGATATACCCCATGAGAAGACAGGTACTGCACGCAATATCTAAAGCTCTTGATGATCCAAAGAGAGCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGGCATCAATTGCATCAAGAAGTCTTCATTTCTAA

Coding sequence (CDS)

ATGATGCTCGTACGAGAAACTGCAATTCAGTGCCTTGTCGCTGTGTCTGAACTGCCCCATGCGACGATATACCCCATGAGAAGACAGGTACTGCACGCAATATCTAAAGCTCTTGATGATCCAAAGAGAGCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGGCATCAATTGCATCAAGAAGTCTTCATTTCTAA

Protein sequence

MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

Homology

[Close]

BLAST of PI0021746.1 vs. ExPASy Swiss-Prot
Match: Q0WVF8 (MMS19 nucleotide excision repair protein homolog OS=Arabidopsis thaliana OX=3702 GN=MMS19 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-19
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            +M+VRET+IQCLVA+ ELPH  IYP RR+VL AI K+LDDPKR VR+EA+RCRQAWASI 
Sbjct: 1069 LMVVRETSIQCLVALLELPHRRIYPFRREVLQAIEKSLDDPKRKVREEAIRCRQAWASIT 1128

Query: 61   SRS 64
            S S
Sbjct: 1129 SGS 1131

[Close]

BLAST of PI0021746.1 vs. ExPASy Swiss-Prot
Match: Q6DCF2 (MMS19 nucleotide excision repair protein homolog OS=Xenopus laevis OX=8355 GN=mms19 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-07
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 2    MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS 61
            M VR TA++C++A+++LP   + P ++QV+ A++K LDD KR VR+EAV  R  W  + S
Sbjct: 960  MAVRITALKCILALTKLPLHMLLPYKQQVIRALAKPLDDKKRLVRKEAVETRCQWFLLGS 1019

[Close]

BLAST of PI0021746.1 vs. ExPASy Swiss-Prot
Match: Q0V9L1 (MMS19 nucleotide excision repair protein homolog OS=Xenopus tropicalis OX=8364 GN=mms19 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-07
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 2    MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS 61
            M VR TA++C++A+++LP   + P ++QV+ A++K LDD KR VR+EAV  R  W  + S
Sbjct: 960  MAVRITALKCILALTKLPLHMLLPYKQQVIRALAKPLDDKKRLVRKEAVETRCQWFLLGS 1019

[Close]

BLAST of PI0021746.1 vs. ExPASy Swiss-Prot
Match: Q9D071 (MMS19 nucleotide excision repair protein homolog OS=Mus musculus OX=10090 GN=Mms19 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-07
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 2    MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS 61
            M VR  A+QC+ A++ LP + + P + QV+ A++K LDD KR VR+EAV  R  W  + S
Sbjct: 969  MAVRIAALQCMHALTRLPTSVLLPYKSQVIRALAKPLDDKKRLVRKEAVSARGEWFLLGS 1028

[Close]

BLAST of PI0021746.1 vs. ExPASy Swiss-Prot
Match: E1BP36 (MMS19 nucleotide excision repair protein homolog OS=Bos taurus OX=9913 GN=MMS19 PE=2 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-06
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 2    MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS 61
            M VR  A+QC+ A++ LP   + P + QV+ A++K LDD KR VR+EAV  R  W  + S
Sbjct: 968  MAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFLLGS 1027

[Close]

BLAST of PI0021746.1 vs. ExPASy TrEMBL
Match: A0A1S3CHF7 (MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 974  MMLVRETAIQCLVAVSELPHARIYPMRRQVLHTISKALDDPKRAVRQEAVRCRQAWASIA 1033

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1034 SRSLHF 1039

[Close]

BLAST of PI0021746.1 vs. ExPASy TrEMBL
Match: A0A1S3CGZ1 (MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 1038 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHTISKALDDPKRAVRQEAVRCRQAWASIA 1097

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1098 SRSLHF 1103

[Close]

BLAST of PI0021746.1 vs. ExPASy TrEMBL
Match: A0A1S3CIF3 (MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 1086 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHTISKALDDPKRAVRQEAVRCRQAWASIA 1145

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1146 SRSLHF 1151

[Close]

BLAST of PI0021746.1 vs. ExPASy TrEMBL
Match: A0A1S3CGY0 (MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.6e-26
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 1079 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHTISKALDDPKRAVRQEAVRCRQAWASIA 1138

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1139 SRSLHF 1144

[Close]

BLAST of PI0021746.1 vs. ExPASy TrEMBL
Match: A0A0A0K7A1 (MMS19 nucleotide excision repair protein OS=Cucumis sativus OX=3659 GN=Csa_7G452350 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKR+VRQEAVRCRQAWASIA
Sbjct: 1082 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHVISKALDDPKRSVRQEAVRCRQAWASIA 1141

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1142 SRSLHF 1147

[Close]

BLAST of PI0021746.1 vs. NCBI nr
Match: XP_038898521.1 (MMS19 nucleotide excision repair protein homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 1034 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 1093

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1094 SRSLHF 1099

[Close]

BLAST of PI0021746.1 vs. NCBI nr
Match: XP_038898520.1 (MMS19 nucleotide excision repair protein homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 1082 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 1141

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1142 SRSLHF 1147

[Close]

BLAST of PI0021746.1 vs. NCBI nr
Match: XP_038898522.1 (MMS19 nucleotide excision repair protein homolog isoform X3 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 1008 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 1067

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1068 SRSLHF 1073

[Close]

BLAST of PI0021746.1 vs. NCBI nr
Match: XP_008462416.1 (PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 9.6e-26
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 1086 MMLVRETAIQCLVAVSELPHARIYPMRRQVLHTISKALDDPKRAVRQEAVRCRQAWASIA 1145

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1146 SRSLHF 1151

[Close]

BLAST of PI0021746.1 vs. NCBI nr
Match: XP_008462420.1 (PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X5 [Cucumis melo] >XP_016902833.1 PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X5 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 9.6e-26
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIA
Sbjct: 974  MMLVRETAIQCLVAVSELPHARIYPMRRQVLHTISKALDDPKRAVRQEAVRCRQAWASIA 1033

Query: 61   SRSLHF 67
            SRSLHF
Sbjct: 1034 SRSLHF 1039

[Close]

BLAST of PI0021746.1 vs. TAIR 10
Match: AT5G48120.1 (ARM repeat superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.2e-20
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1    MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIA 60
            +M+VRET+IQCLVA+ ELPH  IYP RR+VL AI K+LDDPKR VR+EA+RCRQAWASI 
Sbjct: 1069 LMVVRETSIQCLVALLELPHRRIYPFRREVLQAIEKSLDDPKRKVREEAIRCRQAWASIT 1128

Query: 61   SRS 64
            S S
Sbjct: 1129 SGS 1131

The following BLAST results are available for this feature:

BLAST of PI0021746.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WVF8	3.1e-19	73.02	MMS19 nucleotide excision repair protein homolog OS=Arabidopsis thaliana OX=3702...	[more]
Q6DCF2	2.7e-07	45.00	MMS19 nucleotide excision repair protein homolog OS=Xenopus laevis OX=8355 GN=mm...	[more]
Q0V9L1	2.7e-07	45.00	MMS19 nucleotide excision repair protein homolog OS=Xenopus tropicalis OX=8364 G...	[more]
Q9D071	4.6e-07	45.00	MMS19 nucleotide excision repair protein homolog OS=Mus musculus OX=10090 GN=Mms...	[more]
E1BP36	1.0e-06	45.00	MMS19 nucleotide excision repair protein homolog OS=Bos taurus OX=9913 GN=MMS19 ...	[more]

BLAST of PI0021746.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CHF7	4.6e-26	96.97	MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778...	[more]
A0A1S3CGZ1	4.6e-26	96.97	MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778...	[more]
A0A1S3CIF3	4.6e-26	96.97	MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778...	[more]
A0A1S3CGY0	4.6e-26	96.97	MMS19 nucleotide excision repair protein OS=Cucumis melo OX=3656 GN=LOC103500778...	[more]
A0A0A0K7A1	1.0e-25	95.45	MMS19 nucleotide excision repair protein OS=Cucumis sativus OX=3659 GN=Csa_7G452...	[more]

BLAST of PI0021746.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898521.1	3.3e-26	98.48	MMS19 nucleotide excision repair protein homolog isoform X2 [Benincasa hispida]	[more]
XP_038898520.1	3.3e-26	98.48	MMS19 nucleotide excision repair protein homolog isoform X1 [Benincasa hispida]	[more]
XP_038898522.1	3.3e-26	98.48	MMS19 nucleotide excision repair protein homolog isoform X3 [Benincasa hispida]	[more]
XP_008462416.1	9.6e-26	96.97	PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis ...	[more]
XP_008462420.1	9.6e-26	96.97	PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X5 [Cucumis ...	[more]

BLAST of PI0021746.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48120.1	2.2e-20	73.02	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 3..66 e-value: 1.1E-6 score: 30.8
IPR039920	DNA repair/transcription protein MET18/MMS19	PANTHER	PTHR12891	DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19	coord: 2..56
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 4..52

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0021746	PI0021746	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0021746.1-exon	PI0021746.1-exon-chr01:29103491..29103496	exon
PI0021746.1-exon	PI0021746.1-exon-chr01:29103798..29103878	exon
PI0021746.1-exon	PI0021746.1-exon-chr01:29103966..29104045	exon
PI0021746.1-exon	PI0021746.1-exon-chr01:29104139..29104172	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0021746.1-cds	PI0021746.1-cds-chr01:29103491..29103496	CDS
PI0021746.1-cds	PI0021746.1-cds-chr01:29103798..29103878	CDS
PI0021746.1-cds	PI0021746.1-cds-chr01:29103966..29104045	CDS
PI0021746.1-cds	PI0021746.1-cds-chr01:29104139..29104172	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0021746.1	PI0021746.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0097428	protein maturation by iron-sulfur cluster transfer
biological_process	GO:0006281	DNA repair
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0097361	CIA complex
cellular_component	GO:0005634	nucleus