PI0021639.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0021639.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposable element Tf2
Location	chr04: 18881006 .. 18881362 (+)
Sequence length	357
RNA-Seq Expression	PI0021639.1
Synteny	PI0021639.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTACGCATCAAATGGTGGAAAAAAATATGATTATTTCCATCTGGAAGTCAACAAGATGAAATATTGGTTCAAAGCTAGTATTCATCTCCAAGATATAACCAAGCATGAAGACGAAAGCTTTCTTCTTACCGAAAACTTTGTCATGTCGTCGCTAACTGGAGTCGGTTCCCAAGCGGACTTCAACTCAATAATCAATATTGTCGCAATTCAAATCTCTGATCCCGACAATGCTCGAGAAGAAGCCTCGTCTTCAGCCTCTATCAATAAAGAAGCCGTAGAAAATGACGACGAAGACAACTTCGACTTGTATGCCGATTATGACATCAACGACCCATTTTTTATTCATATCCCATAA

mRNA sequence

CTTTACGCATCAAATGGTGGAAAAAAATATGATTATTTCCATCTGGAAGTCAACAAGATGAAATATTGGTTCAAAGCTAGTATTCATCTCCAAGATATAACCAAGCATGAAGACGAAAGCTTTCTTCTTACCGAAAACTTTGTCATGTCGTCGCTAACTGGAGTCGGTTCCCAAGCGGACTTCAACTCAATAATCAATATTGTCGCAATTCAAATCTCTGATCCCGACAATGCTCGAGAAGAAGCCTCGTCTTCAGCCTCTATCAATAAAGAAGCCGTAGAAAATGACGACGAAGACAACTTCGACTTGTATGCCGATTATGACATCAACGACCCATTTTTTATTCATATCCCATAA

Coding sequence (CDS)

CTTTACGCATCAAATGGTGGAAAAAAATATGATTATTTCCATCTGGAAGTCAACAAGATGAAATATTGGTTCAAAGCTAGTATTCATCTCCAAGATATAACCAAGCATGAAGACGAAAGCTTTCTTCTTACCGAAAACTTTGTCATGTCGTCGCTAACTGGAGTCGGTTCCCAAGCGGACTTCAACTCAATAATCAATATTGTCGCAATTCAAATCTCTGATCCCGACAATGCTCGAGAAGAAGCCTCGTCTTCAGCCTCTATCAATAAAGAAGCCGTAGAAAATGACGACGAAGACAACTTCGACTTGTATGCCGATTATGACATCAACGACCCATTTTTTATTCATATCCCATAA

Protein sequence

LYASNGGKKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPFFIHIP

Homology

[Close]

BLAST of PI0021639.1 vs. ExPASy TrEMBL
Match: A0A5D3D8C1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00290 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.6e-23
Identity = 55/97 (56.70%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K+DY HLEVNKMK WFKA+IHLQD+T+ EDE+FLLT+N +MSSL   G Q +FNS++N 
Sbjct: 98  EKFDYSHLEVNKMKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNT 157

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLY 105
           VA+QIS+PD+++ E +S AS+N   +E++D+D+F ++
Sbjct: 158 VAVQISNPDDSQAEVNSPASVN-NVIEDEDDDDFSIH 193

[Close]

BLAST of PI0021639.1 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-20
Identity = 55/106 (51.89%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N 
Sbjct: 313 EKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNN 372

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPF 114
           V + +SD ++   E  S AS+N     N D+ ++D Y   DINDPF
Sbjct: 373 VVVNLSDDNDDLPEDVSPASVN-----NADDFDYDPYEGLDINDPF 413

[Close]

BLAST of PI0021639.1 vs. ExPASy TrEMBL
Match: A0A5A7T5B0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-20
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N 
Sbjct: 230 EKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNN 289

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPF 114
           V + +SD ++   E  S ASIN     N D+ ++D Y   DINDPF
Sbjct: 290 VVVNLSDDNDDLSEDISPASIN-----NVDDLDYDPYEGLDINDPF 330

[Close]

BLAST of PI0021639.1 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 55/106 (51.89%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N 
Sbjct: 313 EKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNN 372

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPF 114
           V + +SD ++   E  S AS+N     N D+ ++D Y   DINDPF
Sbjct: 373 VVVNLSDDNDDLPEDVSPASVN-----NVDDFDYDPYEGLDINDPF 413

[Close]

BLAST of PI0021639.1 vs. ExPASy TrEMBL
Match: A0A5A7TD15 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00520 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 54/109 (49.54%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N 
Sbjct: 313 EKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNN 372

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPFFIH 117
           V + +SD ++   E +S AS+N     + D+ ++D Y   +INDPF+ H
Sbjct: 373 VVVNLSDDNDDLPEDASPASVN-----DVDDLDYDPYEGLNINDPFWTH 416

[Close]

BLAST of PI0021639.1 vs. NCBI nr
Match: TYK19825.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 55/97 (56.70%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K+DY HLEVNKMK WFKA+IHLQD+T+ EDE+FLLT+N +MSSL   G Q +FNS++N 
Sbjct: 98  EKFDYSHLEVNKMKDWFKANIHLQDLTRREDEAFLLTKNVIMSSLIRTGFQEEFNSVVNT 157

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLY 105
           VA+QIS+PD+++ E +S AS+N   +E++D+D+F ++
Sbjct: 158 VAVQISNPDDSQAEVNSPASVN-NVIEDEDDDDFSIH 193

[Close]

BLAST of PI0021639.1 vs. NCBI nr
Match: KAA0038028.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N 
Sbjct: 230 EKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNN 289

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPF 114
           V + +SD ++   E  S ASIN     N D+ ++D Y   DINDPF
Sbjct: 290 VVVNLSDDNDDLSEDISPASIN-----NVDDLDYDPYEGLDINDPF 330

[Close]

BLAST of PI0021639.1 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-19
Identity = 55/106 (51.89%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N 
Sbjct: 313 EKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNN 372

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPF 114
           V + +SD ++   E  S AS+N     N D+ ++D Y   DINDPF
Sbjct: 373 VVVNLSDDNDDLPEDVSPASVN-----NADDFDYDPYEGLDINDPF 413

[Close]

BLAST of PI0021639.1 vs. NCBI nr
Match: KAA0040828.1 (polyprotein [Cucumis melo var. makuwa] >TYK17804.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 54/109 (49.54%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N 
Sbjct: 313 EKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNN 372

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPFFIH 117
           V + +SD ++   E +S AS+N     + D+ ++D Y   +INDPF+ H
Sbjct: 373 VVVNLSDDNDDLPEDASPASVN-----DVDDLDYDPYEGLNINDPFWTH 416

[Close]

BLAST of PI0021639.1 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 55/106 (51.89%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 8   KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINI 67
           +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N 
Sbjct: 313 EKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNN 372

Query: 68  VAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDINDPF 114
           V + +SD ++   E  S AS+N     N D+ ++D Y   DINDPF
Sbjct: 373 VVVNLSDDNDDLPEDVSPASVN-----NVDDFDYDPYEGLDINDPF 413

The following BLAST results are available for this feature:

BLAST of PI0021639.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021639.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8C1	8.6e-23	56.70	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7V6D1	8.9e-20	51.89	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7T5B0	8.9e-20	52.83	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE...	[more]
A0A5A7UVN1	1.2e-19	51.89	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TD15	1.2e-19	49.54	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00520 PE...	[more]

BLAST of PI0021639.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19825.1	1.8e-22	56.70	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0038028.1	1.8e-19	52.83	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0063832.1	1.8e-19	51.89	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0040828.1	2.4e-19	49.54	polyprotein [Cucumis melo var. makuwa] >TYK17804.1 polyprotein [Cucumis melo var...	[more]
KAA0056777.1	2.4e-19	51.89	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]

BLAST of PI0021639.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0021639	PI0021639	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0021639.1-exon	PI0021639.1-exon-chr04:18881006..18881362	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0021639.1-cds	PI0021639.1-cds-chr04:18881006..18881362	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0021639.1	PI0021639.1-protein	polypeptide